Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036491.1

Orthogroup ID

OG0018795

Physical Location & Seq

Genomic Coordinates Reverse (-)

125 .. 697

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036491.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atgtgtgttgcatgtagagaaaatcagagaggagcggaggatttctttgatgtgttactaaaggttggtccggagccgaatgtggtgacttttagcaccatgattaacacgtattgtaaagatcggaggttggaagaggcaattaagctttatgaggttatgaaagagaagggtatcagtccggacttggttgtgtatagcattcttattgacggtctctttaaggcagggaagttggaggaggggcatcgacttttttctgttgcattagatagtgggattaagttggatgtagtcatcttcagttctgttatggatgcatatgtaagaactagaaatttggaaaagctagtggaggagtacagaaggatgtataacgaagggatctcacagaacactgttagttacagtgttcttataaacggcttgtgttataagttctgtttctttgtagtttttgctatggaaaatggatttgatttgtgttattgtggaaatggtgaactgcaggagtcgatgggcagccatggtagtggagaagaggaagaaggagaacagatgaggaagaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

190

Amino Acids

21.59

Weight (kDa)

4.86

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018795)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14011
rosa_chinensis	RchiOBHm_Chr1g0354611 RchiOBHm_Chr2g0131331 RchiOBHm_Chr5g0010141
rosa_laevigata	RLG00000028196
rosa_multiflora	Rmu_sc0036491.1_g000001
rosa_samantha	Rh1AG254500 Rh1CG237600 Rh7CG466400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	419, 435
AccBSI	CCGCTC	1 cut(s)	35
AccIII	TCCGGA	2 cut(s)	70, 181
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	286
AfaI	GTAC	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	108
AluBI	AGCT	2 cut(s)	148, 349
AluI	AGCT	2 cut(s)	148, 349
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	392
Aor13HI	TCCGGA	2 cut(s)	70, 181
ApeKI	GCWGC	1 cut(s)	522
ApoI	RAATTY	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	97, 512
AvaII	GGWCC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	534
BccI	CCATC	1 cut(s)	511
BceAI	ACGGC	1 cut(s)	439
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	2 cut(s)	333, 350
BfmI	CTRYAG	1 cut(s)	506
BisI	GCNGC	1 cut(s)	523
BlsI	GCNGC	1 cut(s)	524
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	75
BmsI	GCATC	2 cut(s)	256, 307
BsaAI	YACGTR	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	526
BsaWI	WCCGGW	2 cut(s)	70, 181
BseAI	TCCGGA	2 cut(s)	70, 181
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	3 cut(s)	295, 322, 375
BseRI	GAGGAG	3 cut(s)	45, 254, 371
BseXI	GCAGC	1 cut(s)	534
BsiSI	CCGG	2 cut(s)	71, 182
BsmAI	GTCTC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	221
Bsp13I	TCCGGA	2 cut(s)	70, 181
Bsp143I	GATC	2 cut(s)	121, 384
Bsp19I	CCATGG	1 cut(s)	526
BspACI	CCGC	1 cut(s)	35
BspEI	TCCGGA	2 cut(s)	70, 181
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	510
BspPI	GGATC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	2 cut(s)	121, 384
BssT1I	CCWWGG	1 cut(s)	526
Bst4CI	ACNGT	3 cut(s)	215, 400, 410
Bst6I	CTCTTC	2 cut(s)	129, 534
BstBAI	YACGTR	1 cut(s)	111
BstDSI	CCRYGG	1 cut(s)	526
BstF5I	GGATG	3 cut(s)	295, 322, 375
BstKTI	GATC	2 cut(s)	124, 387
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	2 cut(s)	121, 384
BstNSI	RCATGY	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	506
BstV1I	GCAGC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	384
BstXI	CCANNNNNNTGG	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	384
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	3 cut(s)	295, 322, 375
BtsIMutI	CAGTG	2 cut(s)	396, 415
Cfr13I	GGNCC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	3 cut(s)	12, 100, 527
CviJI	RGCY	5 cut(s)	76, 148, 349, 426, 525
CviKI_1	RGCY	5 cut(s)	76, 148, 349, 426, 525
CviQI	GTAC	1 cut(s)	361
DpnI	GATC	2 cut(s)	123, 386
DpnII	GATC	2 cut(s)	121, 384
Eam1104I	CTCTTC	2 cut(s)	129, 534
EarI	CTCTTC	2 cut(s)	129, 534
Eco130I	CCWWGG	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	526
EcoT22I	ATGCAT	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	3 cut(s)	15, 103, 530
FatI	CATG	3 cut(s)	11, 99, 526
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	523
FokI	GGATG	3 cut(s)	302, 329, 382
Fsp4HI	GCNGC	1 cut(s)	523
FspBI	CTAG	2 cut(s)	333, 350
GluI	GCNGC	1 cut(s)	523
HapII	CCGG	2 cut(s)	71, 182
Hin1II	CATG	3 cut(s)	15, 103, 530
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	1 cut(s)	512
HpaII	CCGG	2 cut(s)	71, 182
HphI	GGTGA	2 cut(s)	97, 512
Hpy166II	GTNNAC	1 cut(s)	503
Hpy188I	TCNGA	2 cut(s)	27, 126
Hpy188III	TCNNGA	2 cut(s)	71, 182
Hpy8I	GTNNAC	1 cut(s)	503
HpyAV	CCTTC	4 cut(s)	163, 360, 374, 542
HpyCH4III	ACNGT	3 cut(s)	215, 400, 410
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	4 cut(s)	11, 266, 320, 508
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	3 cut(s)	15, 103, 530
Kpn2I	TCCGGA	2 cut(s)	70, 181
Kzo9I	GATC	2 cut(s)	121, 384
LmnI	GCTCC	2 cut(s)	32, 73
LpnPI	CCDG	4 cut(s)	84, 195, 213, 494
Lsp1109I	GCAGC	1 cut(s)	534
LweI	GCATC	2 cut(s)	256, 307
MaeI	CTAG	2 cut(s)	333, 350
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	3 cut(s)	54, 85, 404
MalI	GATC	2 cut(s)	123, 386
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	2 cut(s)	121, 384
MboII	GAAGA	4 cut(s)	146, 292, 551, 557
MflI	RGATCY	1 cut(s)	384
MluCI	AATT	3 cut(s)	141, 337, 568
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	3 cut(s)	111, 216, 267
Mph1103I	ATGCAT	1 cut(s)	322
MroI	TCCGGA	2 cut(s)	70, 181
MseI	TTAA	4 cut(s)	105, 144, 222, 282
MslI	CAYNNNNRTG	1 cut(s)	531
MspI	CCGG	2 cut(s)	71, 182
Mva1269I	GAATGC	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	526
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	2 cut(s)	121, 384
NlaIII	CATG	3 cut(s)	15, 103, 530
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	1 cut(s)	15
PctI	GAATGC	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	524
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
Ppu21I	YACGTR	1 cut(s)	111
PsiI	TTATAA	2 cut(s)	419, 435
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	510
PsuI	RGATCY	1 cut(s)	384
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	4 cut(s)	105, 144, 222, 282
SatI	GCNGC	1 cut(s)	523
Sau3AI	GATC	2 cut(s)	121, 384
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	521
SetI	ASST	6 cut(s)	66, 113, 131, 150, 159, 351
SfaNI	GCATC	2 cut(s)	256, 307
SfcI	CTRYAG	1 cut(s)	506
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	531
Sse9I	AATT	3 cut(s)	141, 337, 568
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	2 cut(s)	333, 350
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	3 cut(s)	215, 400, 410
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	2 cut(s)	250, 515
TasI	AATT	3 cut(s)	141, 337, 568
TatI	WGTACW	1 cut(s)	360
Tru1I	TTAA	4 cut(s)	105, 144, 222, 282
Tru9I	TTAA	4 cut(s)	105, 144, 222, 282
TscAI	CASTG	2 cut(s)	403, 415
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	522
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	403, 415
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	1 cut(s)	15
XspI	CTAG	2 cut(s)	333, 350
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.