Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006798

Physical Location & Seq

Genomic Coordinates Reverse (-)

17300894 .. 17301238

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGGCGATTCAACCCCTCTTCTCTGCGAATCCAACTCTGCCGAGTCAGAACCCCCTCTGCGACAAAAACACCTTCCCTCCCTCGACTCCGCCATCGAACTTTGCATCGGAGATTTCGGGTGGGCACAGTTCCTCCAAGCCATCCTCGTCTCTTTTGCGTGGTTCTTCAACGCCCAGCAAACCTTCATCACCGTCTTCACAGACGCCCAGCCCGCGTGGCACTGCACTCAACAGCTCACTGACATCCCGTGCTCATGCAACTCATCATTCTCAAACATTTGCCAACTTCCCGAGTCCAAATGGGACTGGGATCGGCCCAAACACACCTCTGTAATCTCCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0009705 GO:0009987 GO:0015075 GO:0015711 GO:0016020 GO:0016021 GO:0022857 GO:0031090 GO:0031224 GO:0033554 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070417 GO:0071702 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05231 map05231

Pfam Domains

Protein Families

MFS_1 Sugar_tr

Protein Analysis

114

Amino Acids

12.84

Weight (kDa)

4.53

Isoelectric Point (pI)

61.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16390
fragaria_vesca	FvH4_3g14010
malus_domestica	MD05G1238900.v1.1 MD10G1217000.v1.1
prunus_persica	Prupe.4G127100_v2.0.a1 Prupe.4G127200_v2.0.a1 Prupe.4G127300_v2.0.a1
pyrus_communis	pycom05g21490 pycom10g18300
rosa_chinensis	RchiOBHm_Chr5g0023241 RchiOBHm_Chr5g0023261 RchiOBHm_Chr5g0023301 RchiOBHm_Chr5g0023311
rosa_laevigata	RLG00000032713
rosa_multiflora	Rmu_sc0004693.1_g000003 Rmu_sc0009954.1_g000012 Rmu_sc0009954.1_g000013
rosa_roxburghii	Rroxscaffold_1G00056020 Rroxscaffold_1G00056050
rosa_rugosa	Rorug05G0078300
rosa_samantha	Rh5BG164100 Rh5BG164200 Rh5CG179300 Rh5DG165800 Rh5DG165900
rosa_wichuraiana	Rw5G014860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	215
AciI	CCGC	2 cut(s)	90, 213
AclWI	GGATC	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	12, 169
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw21I	GWGCWC	1 cut(s)	254
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	318
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	254
BccI	CCATC	2 cut(s)	101, 149
BcoDI	GTCTC	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	315
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	204
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 117, 147
Bse1I	ACTGG	1 cut(s)	311
BseGI	GGATG	2 cut(s)	141, 243
BseNI	ACTGG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	127
BseYI	CCCAGC	2 cut(s)	174, 207
BsgI	GTGCAG	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	317
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	316
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	127, 254
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	2 cut(s)	90, 213
BspANI	GGCC	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	215
BspPI	GGATC	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	311
BssMI	GATC	1 cut(s)	310
BssNI	GRCGYC	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	129, 193
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	141, 243
BstFNI	CGCG	1 cut(s)	215
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 217
BstSLI	GKGCMC	1 cut(s)	127
BstUI	CGCG	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	316
BtsCI	GGATG	2 cut(s)	141, 243
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	2 cut(s)	220, 237
Cac8I	GCNNGC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	315
CseI	GACGC	1 cut(s)	212
CviAII	CATG	1 cut(s)	255
CviJI	RGCY	4 cut(s)	140, 211, 235, 316
CviKI_1	RGCY	4 cut(s)	140, 211, 235, 316
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	290
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	1 cut(s)	258
FaiI	YATR	1 cut(s)	256
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	1 cut(s)	254
FauI	CCCGC	1 cut(s)	220
FokI	GGATG	2 cut(s)	128, 230
GsaI	CCCAGC	2 cut(s)	178, 211
HaeIII	GGCC	1 cut(s)	316
HgaI	GACGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	258
HinfI	GANTC	5 cut(s)	8, 29, 44, 86, 293
HphI	GGTGA	1 cut(s)	181
Hpy188I	TCNGA	3 cut(s)	49, 110, 340
Hpy188III	TCNNGA	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	83, 193
HpyCH4III	ACNGT	2 cut(s)	129, 193
HpyCH4V	TGCA	3 cut(s)	105, 225, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 217
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	310
LpnPI	CCDG	3 cut(s)	188, 221, 292
LweI	GCATC	1 cut(s)	114
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	3 cut(s)	11, 157, 187
MhlI	GDGCHC	2 cut(s)	127, 254
MlyI	GAGTC	3 cut(s)	53, 80, 302
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	7 cut(s)	27, 66, 88, 92, 143, 155, 337
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	212, 217
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	1 cut(s)	258
NmeAIII	GCCGAG	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	8, 29
PleI	GAGTC	3 cut(s)	52, 80, 301
PpsI	GAGTC	3 cut(s)	52, 80, 301
PspFI	CCCAGC	2 cut(s)	174, 207
PspPI	GGNCC	1 cut(s)	315
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	3 cut(s)	53, 80, 302
SduI	GDGCHC	2 cut(s)	127, 254
SetI	ASST	4 cut(s)	75, 185, 237, 329
SfaNI	GCATC	1 cut(s)	114
SsiI	CCGC	2 cut(s)	90, 213
TaaI	ACNGT	2 cut(s)	129, 193
TaqI	TCGA	2 cut(s)	84, 96
TfiI	GAWTC	2 cut(s)	8, 29
TscAI	CASTG	2 cut(s)	227, 244
TspDTI	ATGAA	1 cut(s)	175
TspRI	CASTG	2 cut(s)	227, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.