RchiOBHm_Chr5g0024621

Glycine--tRNA ligase 1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
18710463 .. 18710797
335 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 237 bp
ATGGGCATTGCCGCTAAATCATGGAGGGAGGAATATGCCCCTGAAACAGATAACCATCCTCTCTCAAATCCTTATCCTTTCAATTTGATGTTTCAAACATCAATTGGTCCATCTGGTTCCAGCACTGGTTTCTTTCACCCAGAAACTGCACAAGGCATATTTGTGAATTTTATGGACAGACAATGGGTACAAGCTGCCTTTTGCTGTTGCTCAAGTTGGCCAGGCCTTTGGAAATGA

Protein Analysis

78

Amino Acids

8.81

Weight (kDa)

5.43

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019946)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 1 cut(s) 166
AfaI GTAC 1 cut(s) 189
AgsI TTSAA 2 cut(s) 82, 95
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
AlwNI CAGNNNCTG 1 cut(s) 146
AoxI GGCC 2 cut(s) 218, 223
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 128
AvaII GGWCC 1 cut(s) 107
BalI TGGCCA 1 cut(s) 220
BbvI GCAGC 1 cut(s) 181
BccI CCATC 2 cut(s) 63, 118
BciT130I CCWGG 1 cut(s) 222
BisI GCNGC 2 cut(s) 12, 195
BlsI GCNGC 2 cut(s) 13, 196
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 196
BsaBI GATNNNNATC 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 6
Bse8I GATNNNNATC 1 cut(s) 54
BseBI CCWGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 55
BseJI GATNNNNATC 1 cut(s) 54
BseMI GCAATG 1 cut(s) 6
BseNI ACTGG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 2 cut(s) 220, 225
BsnI GGCC 2 cut(s) 220, 225
BspACI CCGC 1 cut(s) 12
BspANI GGCC 2 cut(s) 220, 225
BspLI GGNNCC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 6
BsrI ACTGG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 55
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 181
BstXI CCANNNNNNTGG 1 cut(s) 228
BsuRI GGCC 2 cut(s) 220, 225
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 123
CaiI CAGNNNCTG 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 188
CviAII CATG 1 cut(s) 21
CviJI RGCY 3 cut(s) 194, 220, 225
CviKI_1 RGCY 3 cut(s) 194, 220, 225
CviQI GTAC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 218
Eco147I AGGCCT 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 220
FaeI CATG 1 cut(s) 24
FaiI YATR 4 cut(s) 22, 36, 158, 173
FatI CATG 1 cut(s) 20
Fnu4HI GCNGC 2 cut(s) 12, 195
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 12, 195
GluI GCNGC 2 cut(s) 12, 195
HaeIII GGCC 2 cut(s) 220, 225
Hin1II CATG 1 cut(s) 24
HphI GGTGA 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 149
Hsp92II CATG 1 cut(s) 24
LpnPI CCDG 6 cut(s) 54, 99, 111, 133, 153, 207
Lsp1109I GCAGC 1 cut(s) 181
MfeI CAATTG 1 cut(s) 102
MlsI TGGCCA 1 cut(s) 220
MluCI AATT 3 cut(s) 82, 102, 166
MluNI TGGCCA 1 cut(s) 220
MnlI CCTC 3 cut(s) 18, 22, 69
Mox20I TGGCCA 1 cut(s) 220
MscI TGGCCA 1 cut(s) 220
MslI CAYNNNNRTG 1 cut(s) 161
Msp20I TGGCCA 1 cut(s) 220
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 222
NlaIII CATG 1 cut(s) 24
NlaIV GGNNCC 1 cut(s) 118
PceI AGGCCT 1 cut(s) 225
PkrI GCNGC 2 cut(s) 13, 196
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 146
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 161
SatI GCNGC 2 cut(s) 12, 195
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 222
SetI ASST 1 cut(s) 196
SinI GGWCC 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 3 cut(s) 82, 102, 166
SseBI AGGCCT 1 cut(s) 225
SsiI CCGC 1 cut(s) 12
StuI AGGCCT 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 220
TasI AATT 3 cut(s) 82, 102, 166
TauI GCSGC 1 cut(s) 14
TscAI CASTG 1 cut(s) 130
TseI GCWGC 1 cut(s) 194
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.