RNA exonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0024621 |
| rosa_rugosa | Rorug01G0168600 |
| rosa_samantha | Rh1DG125500 Rh2CG453400 Rh4AG099400 Rh4CG109000 Rh6DG197700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 287 |
| AclWI | GGATC | 1 cut(s) | 209 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 224 |
| AgsI | TTSAA | 2 cut(s) | 82, 95 |
| AluBI | AGCT | 2 cut(s) | 209, 353 |
| AluI | AGCT | 2 cut(s) | 209, 353 |
| Alw21I | GWGCWC | 2 cut(s) | 125, 186 |
| AlwI | GGATC | 1 cut(s) | 209 |
| AspLEI | GCGC | 1 cut(s) | 14 |
| BaeGI | GKGCMC | 1 cut(s) | 132 |
| BanI | GGYRCC | 1 cut(s) | 287 |
| Bbv12I | GWGCWC | 2 cut(s) | 125, 186 |
| BccI | CCATC | 2 cut(s) | 63, 118 |
| BfaI | CTAG | 1 cut(s) | 321 |
| BfoI | RGCGCY | 1 cut(s) | 15 |
| BmiI | GGNNCC | 1 cut(s) | 289 |
| BmrI | ACTGGG | 1 cut(s) | 135 |
| BmuI | ACTGGG | 1 cut(s) | 135 |
| BpuEI | CTTGAG | 1 cut(s) | 298 |
| BsaBI | GATNNNNATC | 1 cut(s) | 54 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 224 |
| Bse1I | ACTGG | 1 cut(s) | 130 |
| Bse3DI | GCAATG | 1 cut(s) | 331 |
| Bse8I | GATNNNNATC | 1 cut(s) | 54 |
| BseGI | GGATG | 1 cut(s) | 55 |
| BseJI | GATNNNNATC | 1 cut(s) | 54 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 224 |
| BseMI | GCAATG | 1 cut(s) | 331 |
| BseMII | CTCAG | 2 cut(s) | 219, 368 |
| BseNI | ACTGG | 1 cut(s) | 130 |
| BseSI | GKGCMC | 1 cut(s) | 132 |
| BsgI | GTGCAG | 1 cut(s) | 253 |
| BshNI | GGYRCC | 1 cut(s) | 287 |
| BsiHKAI | GWGCWC | 2 cut(s) | 125, 186 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 224 |
| Bsp1286I | GDGCHC | 3 cut(s) | 125, 132, 186 |
| Bsp143I | GATC | 1 cut(s) | 214 |
| BspCNI | CTCAG | 2 cut(s) | 218, 367 |
| BspHI | TCATGA | 1 cut(s) | 211 |
| BspLI | GGNNCC | 1 cut(s) | 289 |
| BspPI | GGATC | 1 cut(s) | 209 |
| BspT107I | GGYRCC | 1 cut(s) | 287 |
| BsrDI | GCAATG | 1 cut(s) | 331 |
| BsrI | ACTGG | 1 cut(s) | 130 |
| BssMI | GATC | 1 cut(s) | 214 |
| BstDEI | CTNAG | 2 cut(s) | 205, 354 |
| BstF5I | GGATG | 1 cut(s) | 55 |
| BstH2I | RGCGCY | 1 cut(s) | 15 |
| BstHHI | GCGC | 1 cut(s) | 14 |
| BstKTI | GATC | 1 cut(s) | 217 |
| BstMBI | GATC | 1 cut(s) | 214 |
| BstSLI | GKGCMC | 1 cut(s) | 132 |
| BtsCI | GGATG | 1 cut(s) | 55 |
| BtsIMutI | CAGTG | 1 cut(s) | 123 |
| CciI | TCATGA | 1 cut(s) | 211 |
| CfoI | GCGC | 1 cut(s) | 14 |
| CseI | GACGC | 1 cut(s) | 305 |
| CviAII | CATG | 2 cut(s) | 21, 212 |
| CviJI | RGCY | 3 cut(s) | 209, 241, 353 |
| CviKI_1 | RGCY | 3 cut(s) | 209, 241, 353 |
| DdeI | CTNAG | 2 cut(s) | 205, 354 |
| DpnI | GATC | 1 cut(s) | 216 |
| DpnII | GATC | 1 cut(s) | 214 |
| FaeI | CATG | 2 cut(s) | 24, 215 |
| FaiI | YATR | 4 cut(s) | 22, 36, 159, 213 |
| FatI | CATG | 2 cut(s) | 20, 211 |
| FokI | GGATG | 1 cut(s) | 42 |
| FspBI | CTAG | 1 cut(s) | 321 |
| GlaI | GCGC | 1 cut(s) | 13 |
| HaeII | RGCGCY | 1 cut(s) | 15 |
| HgaI | GACGC | 1 cut(s) | 305 |
| HhaI | GCGC | 1 cut(s) | 14 |
| Hin1II | CATG | 2 cut(s) | 24, 215 |
| Hin6I | GCGC | 1 cut(s) | 12 |
| HinP1I | GCGC | 1 cut(s) | 12 |
| HinfI | GANTC | 1 cut(s) | 257 |
| Hpy188I | TCNGA | 1 cut(s) | 357 |
| Hpy188III | TCNNGA | 1 cut(s) | 212 |
| Hpy99I | CGWCG | 1 cut(s) | 299 |
| HpyAV | CCTTC | 3 cut(s) | 184, 301, 352 |
| HpyCH4V | TGCA | 2 cut(s) | 234, 246 |
| HpyF3I | CTNAG | 2 cut(s) | 205, 354 |
| Hsp92II | CATG | 2 cut(s) | 24, 215 |
| HspAI | GCGC | 1 cut(s) | 12 |
| Kzo9I | GATC | 1 cut(s) | 214 |
| LpnPI | CCDG | 7 cut(s) | 54, 99, 111, 153, 157, 256, 363 |
| MaeI | CTAG | 1 cut(s) | 321 |
| MaeIII | GTNAC | 1 cut(s) | 146 |
| MalI | GATC | 1 cut(s) | 216 |
| MboI | GATC | 1 cut(s) | 214 |
| MboII | GAAGA | 1 cut(s) | 175 |
| MhlI | GDGCHC | 3 cut(s) | 125, 132, 186 |
| MluCI | AATT | 2 cut(s) | 82, 102 |
| MlyI | GAGTC | 1 cut(s) | 266 |
| MnlI | CCTC | 6 cut(s) | 18, 22, 69, 258, 320, 334 |
| NdeII | GATC | 1 cut(s) | 214 |
| NlaIII | CATG | 2 cut(s) | 24, 215 |
| NlaIV | GGNNCC | 1 cut(s) | 289 |
| PagI | TCATGA | 1 cut(s) | 211 |
| PleI | GAGTC | 1 cut(s) | 265 |
| PpsI | GAGTC | 1 cut(s) | 265 |
| PspN4I | GGNNCC | 1 cut(s) | 289 |
| Sau3AI | GATC | 1 cut(s) | 214 |
| SchI | GAGTC | 1 cut(s) | 266 |
| SduI | GDGCHC | 3 cut(s) | 125, 132, 186 |
| SetI | ASST | 4 cut(s) | 195, 211, 293, 355 |
| SmlI | CTYRAG | 1 cut(s) | 313 |
| SmoI | CTYRAG | 1 cut(s) | 313 |
| Sse9I | AATT | 2 cut(s) | 82, 102 |
| SspMI | CTAG | 1 cut(s) | 321 |
| TaqI | TCGA | 2 cut(s) | 119, 294 |
| TasI | AATT | 2 cut(s) | 82, 102 |
| TscAI | CASTG | 1 cut(s) | 130 |
| TspRI | CASTG | 1 cut(s) | 130 |
| XspI | CTAG | 1 cut(s) | 321 |