Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0019946

Physical Location & Seq

Genomic Coordinates Forward (+)

61698566 .. 61707231

Gene Structure 8666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG453400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGACATTGCCGCTAAATCATGGAGGGAGGAATATGCCCCTGAAACAGATAACCATCCTCTCTTAAATCCTTATCCTTTCAATTTGATGTTTCAAACATCAATTGGTCCATCTGGTTCGAGCACTGGTTTCTTTCGCCCAAAAACTGCACAAGGCATATTTGTGAATTTTATGGACAGACAATGGGTACAAGCTGCCTTTTGCTGTTGCTCAAGTTGGCCAGGCCTTTGGAAACGAGGTCATAATTTTCTGTTATATATATATATATATATATTTGTTTTTATCTATTATTACTTTTTATTTATGTTTTTGTTAAGAGATAAGAAGGGATTTGGTGGGGTTTGTTTGATGGGGTGGTGGATGGGGTTTTTGGAGAAAGGAAGAGAGGAGGAGACGGGAAGGAAAGAGAAGAAGAAAAGGAAAGATGAAAAAAAAAAAAAAAGAAGAAGAAGAAAACAGGAGGAGAAGACAACGTATAGAGGAGAAGCAGAAAGAAAAAGGTTGCGAGAGGAAAGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

173

Amino Acids

20.97

Weight (kDa)

9.86

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019946)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024621
rosa_rugosa	Rorug01G0168600
rosa_samantha	Rh1DG125500 Rh2CG453400 Rh4AG099400 Rh4CG109000 Rh6DG197700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	166
AfaI	GTAC	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	82, 95
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	386
AoxI	GGCC	2 cut(s)	218, 223
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	4 cut(s)	63, 118, 343, 355
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	386
BisI	GCNGC	2 cut(s)	12, 195
BlsI	GCNGC	2 cut(s)	13, 196
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	6
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	55, 366
BseJI	GATNNNNATC	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	4 cut(s)	401, 404, 476, 495
BseXI	GCAGC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	220, 225
BsiHKAI	GWGCWC	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	386
BsmBI	CGTCTC	1 cut(s)	386
BsnI	GGCC	2 cut(s)	220, 225
Bsp1286I	GDGCHC	1 cut(s)	125
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	2 cut(s)	220, 225
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	376
BstF5I	GGATG	2 cut(s)	55, 366
BstMAI	GTCTC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	473
BstXI	CCANNNNNNTGG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	220, 225
BtsCI	GGATG	2 cut(s)	55, 366
BtsIMutI	CAGTG	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	1 cut(s)	21
CviJI	RGCY	3 cut(s)	194, 220, 225
CviKI_1	RGCY	3 cut(s)	194, 220, 225
CviQI	GTAC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Eco147I	AGGCCT	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	1 cut(s)	24
FatI	CATG	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	12, 195
FokI	GGATG	2 cut(s)	42, 373
Fsp4HI	GCNGC	2 cut(s)	12, 195
GluI	GCNGC	2 cut(s)	12, 195
HaeIII	GGCC	2 cut(s)	220, 225
Hin1II	CATG	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	319, 393
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	1 cut(s)	149
HpySE526I	ACGT	1 cut(s)	473
Hsp92II	CATG	1 cut(s)	24
LpnPI	CCDG	6 cut(s)	54, 99, 111, 207, 234, 443
Lsp1109I	GCAGC	1 cut(s)	181
MaeII	ACGT	1 cut(s)	473
MboII	GAAGA	7 cut(s)	393, 421, 424, 456, 459, 462, 478
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	220
MluCI	AATT	4 cut(s)	82, 102, 166, 244
MluNI	TGGCCA	1 cut(s)	220
MnlI	CCTC	9 cut(s)	18, 22, 69, 230, 379, 382, 454, 473, 502
Mox20I	TGGCCA	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	220
MseI	TTAA	2 cut(s)	65, 314
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	222
NlaIII	CATG	1 cut(s)	24
PceI	AGGCCT	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	13, 196
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	107
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	65, 314
SatI	GCNGC	2 cut(s)	12, 195
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	4 cut(s)	196, 241, 476, 503
SinI	GGWCC	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	4 cut(s)	82, 102, 166, 244
SseBI	AGGCCT	1 cut(s)	225
SsiI	CCGC	1 cut(s)	12
StuI	AGGCCT	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	220
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	1 cut(s)	119
TasI	AATT	4 cut(s)	82, 102, 166, 244
TauI	GCSGC	1 cut(s)	14
Tru1I	TTAA	2 cut(s)	65, 314
Tru9I	TTAA	2 cut(s)	65, 314
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	441
TspRI	CASTG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.