Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0019946

Physical Location & Seq

Genomic Coordinates Reverse (-)

20258142 .. 20269725

Gene Structure 11584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG109000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGCATTGCCGCTAAATCATGGAGGGAGGAATATGCCCCTGAAACAGATAACCATCCTCTCTCAAATCCTTATCCTTTCAATTTGATGTTTCAAACATCAATTGGTCCATCTGGTTCGAGCACTGGTTTCTTTCGCCCAGAAACTGCACAAGGCATATTTGTGAATTTTATGGACATTTACTTTGACAATGGGTATAAGCTGCCTTTTGCTGTTGCTCAAGTTGGCCAGGCCTTTGGAAACGAGGAGAGTAATCGATGTGTCAGGCATAAATGTCCTGCCTGTTACAAGCAATATAAGAAGAAAGAGCATCTCATTGAGCACAAGAAGGTTGCTTTCCACTCAGCTCATGATCCTATTTGTGGAGTGTGCAGAAAGCCCTGCAAATCTTTTGAGTCATTGAGGGGTCATCTTACTGGTGTGCTCCCAAGGTATTTCAGCTCAGAATGGTCAGTGGCCAAATTTCACTTGCAGGAAGGTCTGCAGCATATTGTTGCCTTTGGCAAGCGGAAGAATACCATCATGATCATTGGCATGGATGGAAGCAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

184

Amino Acids

20.88

Weight (kDa)

9.23

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019946)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024621
rosa_rugosa	Rorug01G0168600
rosa_samantha	Rh1DG125500 Rh2CG453400 Rh4AG099400 Rh4CG109000 Rh6DG197700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	12, 508
AclWI	GGATC	1 cut(s)	347
AcoI	YGGCCR	2 cut(s)	226, 456
AcsI	RAATTY	2 cut(s)	166, 461
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgsI	TTSAA	2 cut(s)	82, 95
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	3 cut(s)	202, 347, 441
AluI	AGCT	3 cut(s)	202, 347, 441
Alw21I	GWGCWC	3 cut(s)	125, 324, 426
AlwI	GGATC	1 cut(s)	347
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	3 cut(s)	226, 231, 456
ApeKI	GCWGC	2 cut(s)	202, 484
ApoI	RAATTY	2 cut(s)	166, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AspS9I	GGNCC	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	107
BalI	TGGCCA	2 cut(s)	228, 458
Bbv12I	GWGCWC	3 cut(s)	125, 324, 426
BbvI	GCAGC	2 cut(s)	189, 496
BccI	CCATC	4 cut(s)	63, 118, 527, 533
BciT130I	CCWGG	1 cut(s)	230
BclI	TGATCA	1 cut(s)	525
BfmI	CTRYAG	1 cut(s)	482
BisI	GCNGC	3 cut(s)	12, 203, 485
BlsI	GCNGC	3 cut(s)	13, 204, 486
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	256
BsaBI	GATNNNNATC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	130, 421
Bse3DI	GCAATG	1 cut(s)	6
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	230
BseCI	ATCGAT	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	2 cut(s)	55, 544
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	2 cut(s)	357, 456
BseNI	ACTGG	2 cut(s)	130, 421
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	189, 496
BsgI	GTGCAG	2 cut(s)	132, 391
BshFI	GGCC	3 cut(s)	228, 233, 458
BshVI	ATCGAT	1 cut(s)	256
BsiHKAI	GWGCWC	3 cut(s)	125, 324, 426
BslI	CCNNNNNNNGG	1 cut(s)	362
BsnI	GGCC	3 cut(s)	228, 233, 458
Bsp1286I	GDGCHC	3 cut(s)	125, 324, 426
Bsp143I	GATC	2 cut(s)	352, 525
BspACI	CCGC	2 cut(s)	12, 508
BspANI	GGCC	3 cut(s)	228, 233, 458
BspCNI	CTCAG	2 cut(s)	356, 455
BspDI	ATCGAT	1 cut(s)	256
BspHI	TCATGA	2 cut(s)	349, 522
BspMAI	CTGCAG	1 cut(s)	486
BspPI	GGATC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	130, 421
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	2 cut(s)	352, 525
BssT1I	CCWWGG	1 cut(s)	428
Bst2UI	CCWGG	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	2 cut(s)	343, 442
BstF5I	GGATG	2 cut(s)	55, 544
BstKTI	GATC	2 cut(s)	355, 528
BstMBI	GATC	2 cut(s)	352, 525
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	482
BstV1I	GCAGC	2 cut(s)	189, 496
BstXI	CCANNNNNNTGG	1 cut(s)	236
Bsu15I	ATCGAT	1 cut(s)	256
BsuRI	GGCC	3 cut(s)	228, 233, 458
BsuTUI	ATCGAT	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	55, 544
BtsIMutI	CAGTG	2 cut(s)	123, 459
Cac8I	GCNNGC	1 cut(s)	506
CaiI	CAGNNNCTG	1 cut(s)	146
CciI	TCATGA	2 cut(s)	349, 522
Cfr13I	GGNCC	1 cut(s)	107
ClaI	ATCGAT	1 cut(s)	256
CviAII	CATG	4 cut(s)	21, 350, 523, 535
CviJI	RGCY	7 cut(s)	202, 228, 233, 347, 379, 441, 458
CviKI_1	RGCY	7 cut(s)	202, 228, 233, 347, 379, 441, 458
DdeI	CTNAG	2 cut(s)	343, 442
DpnI	GATC	2 cut(s)	354, 527
DpnII	GATC	2 cut(s)	352, 525
EaeI	YGGCCR	2 cut(s)	226, 456
Eco130I	CCWWGG	1 cut(s)	428
Eco147I	AGGCCT	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	4 cut(s)	24, 353, 526, 538
FatI	CATG	4 cut(s)	20, 349, 522, 534
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	3 cut(s)	12, 203, 485
FokI	GGATG	2 cut(s)	42, 551
Fsp4HI	GCNGC	3 cut(s)	12, 203, 485
GluI	GCNGC	3 cut(s)	12, 203, 485
HaeIII	GGCC	3 cut(s)	228, 233, 458
Hin1II	CATG	4 cut(s)	24, 353, 526, 538
HinfI	GANTC	1 cut(s)	395
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	2 cut(s)	350, 523
HpyAV	CCTTC	2 cut(s)	322, 470
HpyCH4V	TGCA	5 cut(s)	149, 372, 384, 472, 484
HpyF3I	CTNAG	2 cut(s)	343, 442
Hsp92II	CATG	4 cut(s)	24, 353, 526, 538
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	2 cut(s)	352, 525
LmnI	GCTCC	1 cut(s)	429
Lsp1109I	GCAGC	2 cut(s)	189, 496
LweI	GCATC	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	2 cut(s)	354, 527
MboI	GATC	2 cut(s)	352, 525
MboII	GAAGA	2 cut(s)	313, 523
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	3 cut(s)	125, 324, 426
MlsI	TGGCCA	2 cut(s)	228, 458
MluCI	AATT	4 cut(s)	82, 102, 166, 461
MluNI	TGGCCA	2 cut(s)	228, 458
MlyI	GAGTC	1 cut(s)	404
MnlI	CCTC	5 cut(s)	18, 22, 69, 238, 396
Mox20I	TGGCCA	2 cut(s)	228, 458
MscI	TGGCCA	2 cut(s)	228, 458
MslI	CAYNNNNRTG	2 cut(s)	161, 533
Msp20I	TGGCCA	2 cut(s)	228, 458
MspR9I	CCNGG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	230
NdeII	GATC	2 cut(s)	352, 525
NlaIII	CATG	4 cut(s)	24, 353, 526, 538
PagI	TCATGA	2 cut(s)	349, 522
PceI	AGGCCT	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	13, 204, 486
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	486
PstNI	CAGNNNCTG	1 cut(s)	146
RseI	CAYNNNNRTG	2 cut(s)	161, 533
SatI	GCNGC	3 cut(s)	12, 203, 485
Sau3AI	GATC	2 cut(s)	352, 525
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	3 cut(s)	125, 324, 426
SetI	ASST	6 cut(s)	204, 333, 349, 434, 443, 481
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	482
SinI	GGWCC	1 cut(s)	107
SmiMI	CAYNNNNRTG	2 cut(s)	161, 533
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	4 cut(s)	82, 102, 166, 461
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	2 cut(s)	12, 508
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	428
TaqI	TCGA	2 cut(s)	119, 256
TasI	AATT	4 cut(s)	82, 102, 166, 461
TauI	GCSGC	1 cut(s)	14
TscAI	CASTG	2 cut(s)	130, 459
TseI	GCWGC	2 cut(s)	202, 484
TspRI	CASTG	2 cut(s)	130, 459
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	2 cut(s)	166, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.