RchiOBHm_Chr5g0033001

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
26782923 .. 26784151
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGGCTAGCCCCACAGACTCTATTCCCACTCCCAACTCTGGCATTATTAGGCAGGCATCTTTCTTGTTGATAGTGATTGAGGATTTGAGGTGGAAGCCAGTGGGACAATTTGAGAGCAAAGAAGGTGAAGCTATGAAGTTCTTATTTCAGTGTCCTTGCTGCTCTTGCTTCTGCTTCATGAAGCCAAAGAAGGGCAGAGCAAAGGTGAAGGCTACAGCCAAGGAAGCAGCAAAGGAAGAGAAGAAGGTTGAAGAGAAGAAGGAAGAGAAGAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.41

Weight (kDa)

9.01

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019635)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53880
fragaria_vesca FvH4_3g19691
prunus_persica Prupe.4G177600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0033001
rosa_rugosa Rorug05G0134800
rosa_samantha Rh5BG229200
rosa_wichuraiana Rw5G020850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 38, 191
AgsI TTSAA 1 cut(s) 251
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
ApeKI GCWGC 2 cut(s) 159, 227
AsuHPI GGTGA 2 cut(s) 137, 217
AsuNHI GCTAGC 1 cut(s) 5
BbvI GCAGC 2 cut(s) 146, 239
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 213
BisI GCNGC 2 cut(s) 160, 228
BlsI GCNGC 2 cut(s) 161, 229
BmsI GCATC 1 cut(s) 65
BmtI GCTAGC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 191
Bse1I ACTGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 219
BseLI CCNNNNNNNGG 2 cut(s) 38, 191
BseNI ACTGG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 146, 239
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 38, 191
BsmFI GGGAC 1 cut(s) 117
BspHI TCATGA 1 cut(s) 177
BspOI GCTAGC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 219
BssT1I CCWWGG 1 cut(s) 219
Bst6I CTCTTC 3 cut(s) 231, 246, 258
BstC8I GCNNGC 2 cut(s) 7, 54
BstMWI GCNNNNNNNGC 2 cut(s) 165, 224
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 146, 239
BtsIMutI CAGTG 2 cut(s) 105, 155
Cac8I GCNNGC 2 cut(s) 7, 54
CciI TCATGA 1 cut(s) 177
CviAII CATG 1 cut(s) 178
CviJI RGCY 7 cut(s) 5, 9, 97, 131, 184, 212, 218
CviKI_1 RGCY 7 cut(s) 5, 9, 97, 131, 184, 212, 218
Eam1104I CTCTTC 3 cut(s) 231, 246, 258
EarI CTCTTC 3 cut(s) 231, 246, 258
Eco130I CCWWGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 1 cut(s) 181
FaiI YATR 2 cut(s) 134, 179
FaqI GGGAC 1 cut(s) 117
FatI CATG 1 cut(s) 177
Fnu4HI GCNGC 2 cut(s) 160, 228
Fsp4HI GCNGC 2 cut(s) 160, 228
FspBI CTAG 1 cut(s) 6
GluI GCNGC 2 cut(s) 160, 228
Hin1II CATG 1 cut(s) 181
HinfI GANTC 1 cut(s) 17
HphI GGTGA 2 cut(s) 137, 217
Hpy188III TCNNGA 1 cut(s) 178
HpyAV CCTTC 6 cut(s) 116, 184, 202, 238, 253, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 224
Hsp92II CATG 1 cut(s) 181
LpnPI CCDG 3 cut(s) 24, 38, 111
Lsp1109I GCAGC 2 cut(s) 146, 239
LweI GCATC 1 cut(s) 65
MaeI CTAG 1 cut(s) 6
MboII GAAGA 5 cut(s) 248, 253, 263, 268, 275
MluCI AATT 1 cut(s) 107
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 2 cut(s) 73, 81
MwoI GCNNNNNNNGC 2 cut(s) 165, 224
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 181
PagI TCATGA 1 cut(s) 177
PkrI GCNGC 2 cut(s) 161, 229
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
SatI GCNGC 2 cut(s) 160, 228
SchI GAGTC 1 cut(s) 11
SetI ASST 5 cut(s) 92, 127, 133, 207, 249
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 213
SgeI CNNG 9 cut(s) 18, 51, 65, 76, 110, 168, 177, 190, 232
Sse9I AATT 1 cut(s) 107
SspMI CTAG 1 cut(s) 6
StyI CCWWGG 1 cut(s) 219
TasI AATT 1 cut(s) 107
TscAI CASTG 2 cut(s) 105, 155
TseI GCWGC 2 cut(s) 159, 227
TspDTI ATGAA 3 cut(s) 149, 166, 194
TspRI CASTG 2 cut(s) 105, 155
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.