RchiOBHm_Chr5g0041351

GDSL esterase lipase At4g26790-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
36097104 .. 36098011
908 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
ATGGCATTTAAAGCAATTTATTGGTTTCTCCTAACCCACTTCCTCCTGCAAATTTCTAGGGTGTATGCAAGAGTTCCGGCAATCATTGTGTTTGGAGACTCTTCGGTTGATGCAGGAAACAATAACCAGGTATCGACAATCCTAAAGAGCGACTTTCCACCCTACGGTCGTGATTTCTATGGTGGACAGCCTACAGGGAGATTTTCCAATGGTAGGATTCCACCAGACTTCATTTCTGAAGCTTTTGGGATCAAGCCATTGATACCTGCATTTTGGATCCATTTTATAACATTAAGGATTTTGCTACTGGAGTTTGCTTTGCCTCCGCAGGAACTGGTTATGATAATACCACTTCTGATGTCCTATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

13.96

Weight (kDa)

8.08

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019806)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
Acc36I ACCTGC 1 cut(s) 274
AciI CCGC 1 cut(s) 326
AclWI GGATC 3 cut(s) 257, 271, 284
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 258
AfiI CCNNNNNNNGG 2 cut(s) 164, 213
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 3 cut(s) 257, 271, 284
AlwNI CAGNNNCTG 1 cut(s) 334
ApoI RAATTY 1 cut(s) 51
BamHI GGATCC 1 cut(s) 276
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 278
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 329
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 213
Bse1I ACTGG 2 cut(s) 312, 339
BseBI CCWGG 1 cut(s) 128
BseLI CCNNNNNNNGG 2 cut(s) 164, 213
BseNI ACTGG 2 cut(s) 312, 339
Bsh1285I CGRYCG 1 cut(s) 169
BsiEI CGRYCG 1 cut(s) 169
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 164, 213
BsmAI GTCTC 1 cut(s) 90
Bsp143I GATC 2 cut(s) 249, 276
BspACI CCGC 1 cut(s) 326
BspLI GGNNCC 1 cut(s) 278
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 3 cut(s) 257, 271, 284
BsrI ACTGG 2 cut(s) 312, 339
BssMI GATC 2 cut(s) 249, 276
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 106
BstKTI GATC 2 cut(s) 252, 279
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 2 cut(s) 249, 276
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BveI ACCTGC 1 cut(s) 274
CaiI CAGNNNCTG 1 cut(s) 334
CsiI ACCWGGT 1 cut(s) 126
CviJI RGCY 3 cut(s) 190, 242, 256
CviKI_1 RGCY 3 cut(s) 190, 242, 256
DpnI GATC 2 cut(s) 251, 278
DpnII GATC 2 cut(s) 249, 276
DraI TTTAAA 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 126
FaiI YATR 4 cut(s) 66, 180, 287, 341
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FspBI CTAG 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 329
HapII CCGG 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 2 cut(s) 98, 217
HpaII CCGG 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 2 cut(s) 238, 357
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 4 cut(s) 49, 68, 113, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Kzo9I GATC 2 cut(s) 249, 276
LweI GCATC 1 cut(s) 100
MabI ACCWGGT 1 cut(s) 126
MaeI CTAG 1 cut(s) 57
MalI GATC 2 cut(s) 251, 278
MboI GATC 2 cut(s) 249, 276
MboII GAAGA 1 cut(s) 93
MflI RGATCY 1 cut(s) 276
MluCI AATT 2 cut(s) 15, 51
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 2 cut(s) 53, 333
MseI TTAA 2 cut(s) 9, 293
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 249, 276
NlaIV GGNNCC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 217
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PsiI TTATAA 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 278
PstNI CAGNNNCTG 1 cut(s) 334
PsuI RGATCY 1 cut(s) 276
SaqAI TTAA 2 cut(s) 9, 293
Sau3AI GATC 2 cut(s) 249, 276
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 128
SetI ASST 3 cut(s) 132, 244, 268
SexAI ACCWGGT 1 cut(s) 126
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 192
Sse9I AATT 2 cut(s) 15, 51
SsiI CCGC 1 cut(s) 326
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 134
TasI AATT 2 cut(s) 15, 51
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 2 cut(s) 9, 293
Tru9I TTAA 2 cut(s) 9, 293
TspDTI ATGAA 1 cut(s) 220
XapI RAATTY 1 cut(s) 51
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.