Rmu_co8485635.1_g000001

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8485635.1
Physical Location & Seq
Forward (+)
1813 .. 2103
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8485635.1_g000001.1.cds

Sequence Viewer

Length: 291 bp
atgatagtttccggtaaactcttggtttccttgagccttctagttcttgttatcaaagtgtctcatgggcagcctttagttcctgcactcatcatctttggggactctgttgctgatgtgggaaataataacaaccgcactacactagtgaaggcaaacttccctccttatggaagagacttcgttaatcatcaaccgactggaagattttgtaatgggaagcttgccacagacttcaccggtaacattatcaactgtttcattttcttctctaatgagttaaatgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

96

Amino Acids

10.43

Weight (kDa)

8.77

Isoelectric Point (pI)

9.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019806)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 170
AgeI ACCGGT 1 cut(s) 239
AhlI ACTAGT 1 cut(s) 145
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw26I GTCTC 2 cut(s) 66, 171
ApeKI GCWGC 1 cut(s) 70
AsiGI ACCGGT 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 229
BbvI GCAGC 1 cut(s) 82
BcoDI GTCTC 2 cut(s) 66, 171
BcuI ACTAGT 1 cut(s) 145
BfaI CTAG 2 cut(s) 41, 146
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 52
BsaWI WCCGGW 2 cut(s) 11, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 205
BseXI GCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 69
BshTI ACCGGT 1 cut(s) 239
BsiSI CCGG 2 cut(s) 12, 240
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 2 cut(s) 66, 171
BsmFI GGGAC 1 cut(s) 116
BspACI CCGC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 225
BstMAI GTCTC 2 cut(s) 66, 171
BstV1I GCAGC 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 225
Cfr10I RCCGGY 1 cut(s) 239
CspAI ACCGGT 1 cut(s) 239
CviAII CATG 1 cut(s) 65
CviJI RGCY 3 cut(s) 36, 73, 223
CviKI_1 RGCY 3 cut(s) 36, 73, 223
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
FaeI CATG 1 cut(s) 68
FaiI YATR 2 cut(s) 66, 171
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 2 cut(s) 41, 146
GluI GCNGC 1 cut(s) 71
HapII CCGG 2 cut(s) 12, 240
Hin1II CATG 1 cut(s) 68
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 104
HpaII CCGG 2 cut(s) 12, 240
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 47, 145
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 86
Hsp92II CATG 1 cut(s) 68
LpnPI CCDG 4 cut(s) 25, 96, 186, 253
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 2 cut(s) 41, 146
MaeIII GTNAC 1 cut(s) 242
MboII GAAGA 3 cut(s) 186, 216, 259
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 1 cut(s) 174
MseI TTAA 2 cut(s) 186, 281
MspI CCGG 2 cut(s) 12, 240
NlaIII CATG 1 cut(s) 68
PinAI ACCGGT 1 cut(s) 239
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
SaqAI TTAA 2 cut(s) 186, 281
SatI GCNGC 1 cut(s) 71
SchI GAGTC 1 cut(s) 98
SetI ASST 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
SpeI ACTAGT 1 cut(s) 145
SsiI CCGC 1 cut(s) 136
SspMI CTAG 2 cut(s) 41, 146
TaaI ACNGT 1 cut(s) 257
Tru1I TTAA 2 cut(s) 186, 281
Tru9I TTAA 2 cut(s) 186, 281
TseI GCWGC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 250
XspI CTAG 2 cut(s) 41, 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.