Rh3CG048600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
3335380 .. 3336032
653 bp
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UTR
Exon/CDS
Intron
Rh3CG048600.1

Sequence Viewer

Length: 207 bp
ATGCAGCCAATCAATTCCGGTGACACGAAGACAGGAACTCACAACAGCTTTCTATCTCTCTTTCCATCGATAAGATTGAAGAAGACTTGGCTTCAGAGATTGAAGAATTCCAGATTAGCTTGGAATAGAGTTACAGATTTGGGCTTCACTTTGGTGTTTATAGCCGCAATCTTTCTGGATAAGGTACTCTGCATTTGTTTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.74

Weight (kDa)

10.2

Isoelectric Point (pI)

18.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019806)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 165
AcsI RAATTY 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 1 cut(s) 186
AgsI TTSAA 2 cut(s) 79, 103
AleI CACNNNNGTG 1 cut(s) 152
AluBI AGCT 2 cut(s) 48, 119
AluI AGCT 2 cut(s) 48, 119
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 32
BbsI GAAGAC 2 cut(s) 35, 89
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 73
BisI GCNGC 2 cut(s) 5, 165
BlsI GCNGC 2 cut(s) 6, 166
BpiI GAAGAC 2 cut(s) 35, 89
Bsa29I ATCGAT 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 17
BseCI ATCGAT 1 cut(s) 68
BseXI GCAGC 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 68
BsiSI CCGG 1 cut(s) 18
BspACI CCGC 1 cut(s) 165
BspDI ATCGAT 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 2 cut(s) 35, 89
Bsu15I ATCGAT 1 cut(s) 68
BsuTUI ATCGAT 1 cut(s) 68
ClaI ATCGAT 1 cut(s) 68
Csp6I GTAC 1 cut(s) 185
CviJI RGCY 7 cut(s) 7, 48, 91, 119, 144, 164, 204
CviKI_1 RGCY 7 cut(s) 7, 48, 91, 119, 144, 164, 204
CviQI GTAC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 77
EcoRI GAATTC 1 cut(s) 106
FaiI YATR 1 cut(s) 161
Fnu4HI GCNGC 2 cut(s) 5, 165
Fsp4HI GCNGC 2 cut(s) 5, 165
GluI GCNGC 2 cut(s) 5, 165
HapII CCGG 1 cut(s) 18
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 2 cut(s) 111, 176
HpyCH4V TGCA 2 cut(s) 4, 192
LpnPI CCDG 4 cut(s) 18, 31, 124, 161
Lsp1109I GCAGC 1 cut(s) 16
MaeIII GTNAC 2 cut(s) 20, 130
MboII GAAGA 4 cut(s) 40, 91, 94, 115
MluCI AATT 2 cut(s) 13, 106
MslI CAYNNNNRTG 1 cut(s) 152
MspI CCGG 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 20
OliI CACNNNNGTG 1 cut(s) 152
PkrI GCNGC 2 cut(s) 6, 166
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 152
SatI GCNGC 2 cut(s) 5, 165
SetI ASST 3 cut(s) 50, 121, 186
SgeI CNNG 7 cut(s) 30, 37, 45, 99, 123, 132, 188
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 2 cut(s) 13, 106
SsiI CCGC 1 cut(s) 165
TaqI TCGA 1 cut(s) 68
TasI AATT 2 cut(s) 13, 106
TauI GCSGC 1 cut(s) 167
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 20
XapI RAATTY 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.