RchiOBHm_Chr5g0047921

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018711
Physical Location & Seq
Reverse (-)
44557551 .. 44561536
3986 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 375 bp
ATGGGTTTCATATCTATGATTTGTGGGTCTATTTCGGTTTGGTTTCTGGTCAGAGTCGTAGTTAATCTGTTCTTTTTATGGTTTCTGGTTTCCCTAAGTTTTGTCGTCATGGCCTCCAAGAGCATCTTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACTTCCTTCAGCACAGGTTCTGTGGCTAAGGACATGTTTCATTGGCAAGCAACGATTATGGGATCCCCTGATAGCCCATATGCTGGAGATGTATTCCTTGTCACCATTCATTTCCCTCCTGACTATCCTTTCAAACCACCTAAGGTTGCATTTAGGACTAAGGTCTTCCGTCTTCCACCCATATACCAACAGCAATGGAAGCATTTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624
Pfam Domains
Protein Families
UQ_con

Protein Analysis

124

Amino Acids

14.2

Weight (kDa)

9.56

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 42 - 111 2e-20 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018711)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0047921
rosa_multiflora Rmu_sc0010407.1_g000017
rosa_rugosa Rorug03G0288700 Rorug03G0290500 Rorug03G0290500
rosa_samantha Rh4AG101600 Rh4AG203400 Rh4BG109200 Rh4CG109600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 245
AclWI GGATC 4 cut(s) 149, 162, 219, 232
AcuI CTGAAG 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 245
AflII CTTAAG 1 cut(s) 137
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 2 cut(s) 130, 295
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
AlwI GGATC 4 cut(s) 149, 162, 219, 232
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 256
AxyI CCTNAGG 1 cut(s) 303
BamHI GGATCC 2 cut(s) 154, 224
BbsI GAAGAC 2 cut(s) 319, 326
BfrI CTTAAG 1 cut(s) 137
BmiI GGNNCC 2 cut(s) 156, 226
BmsI GCATC 1 cut(s) 132
BoxI GACNNNNGTC 1 cut(s) 323
BpiI GAAGAC 2 cut(s) 319, 326
BpmI CTGGAG 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse21I CCTNAGG 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 362
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 1 cut(s) 362
BshFI GGCC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 245
BsnI GGCC 1 cut(s) 113
Bsp143I GATC 2 cut(s) 154, 224
BspANI GGCC 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 156, 226
BspPI GGATC 4 cut(s) 149, 162, 219, 232
BspTI CTTAAG 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 362
BssMI GATC 2 cut(s) 154, 224
BstAFI CTTAAG 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 4 cut(s) 95, 189, 303, 321
BstKTI GATC 2 cut(s) 157, 227
BstMBI GATC 2 cut(s) 154, 224
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNSI RCATGY 1 cut(s) 199
BstPAI GACNNNNGTC 1 cut(s) 323
BstV2I GAAGAC 2 cut(s) 319, 326
BstX2I RGATCY 2 cut(s) 154, 224
BstYI RGATCY 2 cut(s) 154, 224
Bsu36I CCTNAGG 1 cut(s) 303
BsuRI GGCC 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 182
CviAII CATG 2 cut(s) 109, 196
CviJI RGCY 4 cut(s) 113, 136, 188, 237
CviKI_1 RGCY 4 cut(s) 113, 136, 188, 237
DdeI CTNAG 4 cut(s) 95, 189, 303, 321
DpnI GATC 2 cut(s) 156, 226
DpnII GATC 2 cut(s) 154, 224
Eco57I CTGAAG 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 303
FaeI CATG 2 cut(s) 112, 199
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 2 cut(s) 108, 195
FauNDI CATATG 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 1 cut(s) 113
Hin1II CATG 2 cut(s) 112, 199
HinfI GANTC 1 cut(s) 54
HphI GGTGA 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 3 cut(s) 127, 281, 372
HpyAV CCTTC 3 cut(s) 124, 145, 178
HpyCH4V TGCA 2 cut(s) 148, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 4 cut(s) 95, 189, 303, 321
Hsp92II CATG 2 cut(s) 112, 199
Kzo9I GATC 2 cut(s) 154, 224
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 6 cut(s) 32, 71, 162, 231, 243, 294
LweI GCATC 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 262
MalI GATC 2 cut(s) 156, 226
MboI GATC 2 cut(s) 154, 224
MboII GAAGA 2 cut(s) 319, 326
MflI RGATCY 2 cut(s) 154, 224
MlyI GAGTC 1 cut(s) 63
MnlI CCTC 3 cut(s) 124, 168, 288
MseI TTAA 2 cut(s) 63, 138
MslI CAYNNNNRTG 1 cut(s) 14
MspCI CTTAAG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 361
NdeI CATATG 1 cut(s) 241
NdeII GATC 2 cut(s) 154, 224
NlaIII CATG 2 cut(s) 112, 199
NlaIV GGNNCC 2 cut(s) 156, 226
NmuCI GTSAC 1 cut(s) 262
NspI RCATGY 1 cut(s) 199
PciI ACATGT 1 cut(s) 195
PflMI CCANNNNNTGG 1 cut(s) 245
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PscI ACATGT 1 cut(s) 195
PshAI GACNNNNGTC 1 cut(s) 323
PspN4I GGNNCC 2 cut(s) 156, 226
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 2 cut(s) 154, 224
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 2 cut(s) 63, 138
Sau3AI GATC 2 cut(s) 154, 224
SchI GAGTC 1 cut(s) 63
SetI ASST 5 cut(s) 138, 181, 304, 309, 327
SfaNI GCATC 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Tru1I TTAA 2 cut(s) 63, 138
Tru9I TTAA 2 cut(s) 63, 138
TseFI GTSAC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 191, 260
TspGWI ACGGA 1 cut(s) 320
Van91I CCANNNNNTGG 1 cut(s) 245
Vha464I CTTAAG 1 cut(s) 137
XceI RCATGY 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.