Rh4AG101600

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0018711
Physical Location & Seq
Reverse (-)
21628934 .. 21644652
15719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG101600.1

Sequence Viewer

Length: 339 bp
ATGACAGCAAGAGAGAGGAAGCAAAAGGAAGAGGCTCCTATGAAATTGAAGCCATTTGAAAGTTTCGTCGTCATCGCCTCCAAGAGCATCTTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCTCACTTCCTTCAGCACAGGTTCTGTGGCTAAGGACATGTTTCATTGGCAAGCAACGATTATGGGATCCCCTGATAGCCCATATGCTGGAGGTGTGTTCCTTGTCACCATTAATTTCCCTCCTGACTATCCTTTCAAACCACCTAAGGTTGCATTTAGGACTAAGGTCTTATGTCTTCCATCCATATACCAACAGCAATGGAAGCATTTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UQ_con

Protein Analysis

112

Amino Acids

12.75

Weight (kDa)

9.55

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 30 - 98 3.5e-20 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018711)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0047921
rosa_multiflora Rmu_sc0010407.1_g000017
rosa_rugosa Rorug03G0288700 Rorug03G0290500 Rorug03G0290500
rosa_samantha Rh4AG101600 Rh4AG203400 Rh4BG109200 Rh4CG109600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 209
AclWI GGATC 4 cut(s) 113, 126, 183, 196
AcuI CTGAAG 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 209
AflII CTTAAG 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 4 cut(s) 49, 59, 94, 259
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
AlwI GGATC 4 cut(s) 113, 126, 183, 196
AlwNI CAGNNNCTG 1 cut(s) 146
AseI ATTAAT 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 220
AxyI CCTNAGG 1 cut(s) 267
BamHI GGATCC 2 cut(s) 118, 188
BbsI GAAGAC 1 cut(s) 290
BccI CCATC 1 cut(s) 310
BfrI CTTAAG 1 cut(s) 101
BmiI GGNNCC 3 cut(s) 36, 120, 190
BmsI GCATC 1 cut(s) 96
BoxI GACNNNNGTC 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse21I CCTNAGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 326
BseGI GGATG 1 cut(s) 302
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMI GCAATG 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 209
Bsp143I GATC 2 cut(s) 118, 188
BspLI GGNNCC 3 cut(s) 36, 120, 190
BspPI GGATC 4 cut(s) 113, 126, 183, 196
BspTI CTTAAG 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 326
BssMI GATC 2 cut(s) 118, 188
Bst6I CTCTTC 1 cut(s) 24
BstAFI CTTAAG 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 3 cut(s) 153, 267, 285
BstF5I GGATG 1 cut(s) 302
BstKTI GATC 2 cut(s) 121, 191
BstMBI GATC 2 cut(s) 118, 188
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNSI RCATGY 1 cut(s) 163
BstPAI GACNNNNGTC 1 cut(s) 287
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 2 cut(s) 118, 188
BstYI RGATCY 2 cut(s) 118, 188
Bsu36I CCTNAGG 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 302
Cac8I GCNNGC 1 cut(s) 174
CaiI CAGNNNCTG 1 cut(s) 146
CviAII CATG 1 cut(s) 160
CviJI RGCY 5 cut(s) 35, 52, 100, 152, 201
CviKI_1 RGCY 5 cut(s) 35, 52, 100, 152, 201
DdeI CTNAG 3 cut(s) 153, 267, 285
DpnI GATC 2 cut(s) 120, 190
DpnII GATC 2 cut(s) 118, 188
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 118
Eco81I CCTNAGG 1 cut(s) 267
FaeI CATG 1 cut(s) 163
FaiI YATR 8 cut(s) 41, 161, 185, 205, 207, 295, 308, 310
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FatI CATG 1 cut(s) 159
FauNDI CATATG 1 cut(s) 205
FokI GGATG 1 cut(s) 289
GsuI CTGGAG 1 cut(s) 231
Hin1II CATG 1 cut(s) 163
HphI GGTGA 1 cut(s) 220
Hpy188III TCNNGA 3 cut(s) 91, 245, 336
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 3 cut(s) 88, 109, 142
HpyCH4V TGCA 2 cut(s) 112, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 3 cut(s) 153, 267, 285
Hsp92II CATG 1 cut(s) 163
Kzo9I GATC 2 cut(s) 118, 188
LmnI GCTCC 2 cut(s) 40, 97
LpnPI CCDG 4 cut(s) 126, 195, 207, 258
LweI GCATC 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 226
MalI GATC 2 cut(s) 120, 190
MboI GATC 2 cut(s) 118, 188
MboII GAAGA 2 cut(s) 41, 290
MflI RGATCY 2 cut(s) 118, 188
MluCI AATT 2 cut(s) 44, 235
MnlI CCTC 6 cut(s) 9, 25, 88, 132, 206, 252
MseI TTAA 2 cut(s) 102, 234
MspCI CTTAAG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 325
NdeI CATATG 1 cut(s) 205
NdeII GATC 2 cut(s) 118, 188
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 3 cut(s) 36, 120, 190
NmuCI GTSAC 1 cut(s) 226
NspI RCATGY 1 cut(s) 163
PciI ACATGT 1 cut(s) 159
PflMI CCANNNNNTGG 1 cut(s) 209
PscI ACATGT 1 cut(s) 159
PshAI GACNNNNGTC 1 cut(s) 287
PshBI ATTAAT 1 cut(s) 234
PspN4I GGNNCC 3 cut(s) 36, 120, 190
PstNI CAGNNNCTG 1 cut(s) 146
PsuI RGATCY 2 cut(s) 118, 188
SaqAI TTAA 2 cut(s) 102, 234
Sau3AI GATC 2 cut(s) 118, 188
SetI ASST 6 cut(s) 102, 145, 217, 268, 273, 291
SfaNI GCATC 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 2 cut(s) 44, 235
TasI AATT 2 cut(s) 44, 235
Tru1I TTAA 2 cut(s) 102, 234
Tru9I TTAA 2 cut(s) 102, 234
TseFI GTSAC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 56, 155
Van91I CCANNNNNTGG 1 cut(s) 209
Vha464I CTTAAG 1 cut(s) 101
VspI ATTAAT 1 cut(s) 234
XceI RCATGY 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.