Rmu_sc0010407.1_g000017

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010407.1
OG0018711
Physical Location & Seq
Forward (+)
47741 .. 51642
3902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010407.1_g000017.1.cds

Sequence Viewer

Length: 840 bp
atgcagggtatcccagccgaagccagactaatccactgcacgtctatggggaaaattccaccacaaactggccacaagtctctggggacctctccgttgacctatgagatccctaacggcctctttggggaccttcgacaaggtttctggcgacatccagtagtcggtgactggagtccgtgtactgtgagcaccgttatggctgcagctccaatcctttgcattgtccattccgatcttgctcgtcttgccttctttcttgtggctcccatgctcgtcgcttctcgaaaaaagataaacattggatttgctcggatattcaatattctggcaaccatttcaatacaaggtgagattacacaattagaggttactcgcagcaccacccgcccagcgaccacacgaacgatcttcatcaatggaagagcctccggtatgctcgctacctgcgtcatccaacccatcgatatcatcaaggtgagtattgaaattcatcaagatttttggtttatggtcaaagtcgtagttaatctgttctttttctggtttctggtttccctaagtttcgtcgtcatcgcctccaagagcatcttgaaggagcttaaggatttgcagaaggatcctctcacttccttcagcacaggttctgtggctaaggacatgtttcattggcaagcaacgattatgggatcccctgatagcccatatgctggaggtgtgttccttgtcaccattcatttccctcctgactatcctttcaaaccacctaaggttgcatttaggactaaggtcttccgtcttccatccatataccaacagcaatggaagcatttgtcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624
Pfam Domains
Protein Families
UQ_con

Protein Analysis

279

Amino Acids

31.14

Weight (kDa)

9.72

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018711)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0047921
rosa_multiflora Rmu_sc0010407.1_g000017
rosa_rugosa Rorug03G0288700 Rorug03G0290500 Rorug03G0290500
rosa_samantha Rh4AG101600 Rh4AG203400 Rh4BG109200 Rh4CG109600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 455
AccB7I CCANNNNNTGG 2 cut(s) 68, 710
AciI CCGC 1 cut(s) 388
AclWI GGATC 5 cut(s) 103, 614, 627, 684, 697
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 2 cut(s) 54, 489
AcuI CTGAAG 1 cut(s) 619
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 4 cut(s) 68, 127, 164, 710
AflII CTTAAG 1 cut(s) 602
AflIII ACRYGT 1 cut(s) 660
AgsI TTSAA 5 cut(s) 322, 342, 488, 595, 760
AjiI CACGTC 1 cut(s) 42
AluBI AGCT 2 cut(s) 209, 601
AluI AGCT 2 cut(s) 209, 601
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 5 cut(s) 103, 614, 627, 684, 697
AlwNI CAGNNNCTG 1 cut(s) 647
AoxI GGCC 2 cut(s) 70, 118
ApeKI GCWGC 3 cut(s) 203, 206, 378
ApoI RAATTY 2 cut(s) 54, 489
AspS9I GGNCC 2 cut(s) 87, 130
AsuHPI GGTGA 4 cut(s) 179, 362, 490, 721
AvaII GGWCC 2 cut(s) 87, 130
AxyI CCTNAGG 1 cut(s) 768
BalI TGGCCA 1 cut(s) 72
BamHI GGATCC 2 cut(s) 619, 689
BbsI GAAGAC 2 cut(s) 784, 791
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 3 cut(s) 190, 218, 390
BccI CCATC 2 cut(s) 470, 811
BceAI ACGGC 1 cut(s) 133
BciVI GTATCC 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 204
BfrI CTTAAG 1 cut(s) 602
BfuAI ACCTGC 1 cut(s) 455
BfuI GTATCC 1 cut(s) 20
BisI GCNGC 3 cut(s) 204, 207, 379
BlsI GCNGC 3 cut(s) 205, 208, 380
Bme18I GGWCC 2 cut(s) 87, 130
BmgBI CACGTC 1 cut(s) 42
BmgT120I GGNCC 2 cut(s) 87, 130
BmiI GGNNCC 5 cut(s) 88, 131, 267, 621, 691
BmsI GCATC 1 cut(s) 597
BoxI GACNNNNGTC 2 cut(s) 174, 788
BpiI GAAGAC 2 cut(s) 784, 791
BpmI CTGGAG 2 cut(s) 193, 732
Bpu10I CCTNAGC 1 cut(s) 654
Bsa29I ATCGAT 1 cut(s) 465
BsaBI GATNNNNATC 1 cut(s) 413
BsaWI WCCGGW 1 cut(s) 431
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 127, 164, 710
Bse1I ACTGG 3 cut(s) 73, 158, 176
Bse21I CCTNAGG 1 cut(s) 768
Bse3DI GCAATG 1 cut(s) 827
Bse8I GATNNNNATC 1 cut(s) 413
BseCI ATCGAT 1 cut(s) 465
BseGI GGATG 3 cut(s) 154, 453, 803
BseJI GATNNNNATC 1 cut(s) 413
BseLI CCNNNNNNNGG 4 cut(s) 68, 127, 164, 710
BseMI GCAATG 1 cut(s) 827
BseNI ACTGG 3 cut(s) 73, 158, 176
BseXI GCAGC 3 cut(s) 190, 218, 390
BseYI CCCAGC 2 cut(s) 13, 391
BsgI GTGCAG 1 cut(s) 22
BshFI GGCC 2 cut(s) 72, 120
BshVI ATCGAT 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 1 cut(s) 432
BslFI GGGAC 2 cut(s) 100, 143
BslI CCNNNNNNNGG 4 cut(s) 68, 127, 164, 710
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 2 cut(s) 100, 143
BsnI GGCC 2 cut(s) 72, 120
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 5 cut(s) 108, 235, 408, 619, 689
BspACI CCGC 1 cut(s) 388
BspANI GGCC 2 cut(s) 72, 120
BspDI ATCGAT 1 cut(s) 465
BspLI GGNNCC 5 cut(s) 88, 131, 267, 621, 691
BspMAI CTGCAG 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 455
BspPI GGATC 5 cut(s) 103, 614, 627, 684, 697
BspQI GCTCTTC 1 cut(s) 418
BspTI CTTAAG 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 827
BsrI ACTGG 3 cut(s) 73, 158, 176
BssMI GATC 5 cut(s) 108, 235, 408, 619, 689
Bst4CI ACNGT 2 cut(s) 187, 196
Bst6I CTCTTC 1 cut(s) 418
BstAFI CTTAAG 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 441, 675
BstDEI CTNAG 4 cut(s) 560, 654, 768, 786
BstF5I GGATG 3 cut(s) 154, 453, 803
BstKTI GATC 5 cut(s) 111, 238, 411, 622, 692
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 5 cut(s) 108, 235, 408, 619, 689
BstMWI GCNNNNNNNGC 3 cut(s) 248, 387, 826
BstNSI RCATGY 1 cut(s) 664
BstPAI GACNNNNGTC 2 cut(s) 174, 788
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 3 cut(s) 190, 218, 390
BstV2I GAAGAC 2 cut(s) 784, 791
BstX2I RGATCY 3 cut(s) 108, 619, 689
BstYI RGATCY 3 cut(s) 108, 619, 689
Bsu15I ATCGAT 1 cut(s) 465
Bsu36I CCTNAGG 1 cut(s) 768
BsuI GTATCC 1 cut(s) 20
BsuRI GGCC 2 cut(s) 72, 120
BsuTUI ATCGAT 1 cut(s) 465
BtgZI GCGATG 1 cut(s) 559
BtrI CACGTC 1 cut(s) 42
BtsCI GGATG 3 cut(s) 154, 453, 803
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 34
BveI ACCTGC 1 cut(s) 455
Cac8I GCNNGC 2 cut(s) 441, 675
CaiI CAGNNNCTG 1 cut(s) 647
Cfr13I GGNCC 2 cut(s) 87, 130
ClaI ATCGAT 1 cut(s) 465
CseI GACGC 1 cut(s) 439
Csp6I GTAC 1 cut(s) 183
CviAII CATG 2 cut(s) 271, 661
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 4 cut(s) 560, 654, 768, 786
DpnI GATC 5 cut(s) 110, 237, 410, 621, 691
DpnII GATC 5 cut(s) 108, 235, 408, 619, 689
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 418
Eco32I GATATC 1 cut(s) 469
Eco47I GGWCC 2 cut(s) 87, 130
Eco57I CTGAAG 1 cut(s) 619
Eco81I CCTNAGG 1 cut(s) 768
EcoO109I RGGNCCY 2 cut(s) 87, 130
EcoRV GATATC 1 cut(s) 469
FaeI CATG 2 cut(s) 274, 664
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FaqI GGGAC 2 cut(s) 100, 143
FatI CATG 2 cut(s) 270, 660
FauI CCCGC 1 cut(s) 395
FauNDI CATATG 1 cut(s) 706
Fnu4HI GCNGC 3 cut(s) 204, 207, 379
FokI GGATG 3 cut(s) 141, 440, 790
Fsp4HI GCNGC 3 cut(s) 204, 207, 379
GluI GCNGC 3 cut(s) 204, 207, 379
GsaI CCCAGC 2 cut(s) 17, 395
GsuI CTGGAG 2 cut(s) 193, 732
HaeIII GGCC 2 cut(s) 72, 120
HapII CCGG 1 cut(s) 432
HgaI GACGC 1 cut(s) 439
Hin1II CATG 2 cut(s) 274, 664
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 1 cut(s) 175
HpaII CCGG 1 cut(s) 432
HphI GGTGA 4 cut(s) 179, 362, 490, 721
Hpy166II GTNNAC 2 cut(s) 99, 183
Hpy188I TCNGA 2 cut(s) 235, 315
Hpy188III TCNNGA 5 cut(s) 285, 497, 592, 746, 837
Hpy8I GTNNAC 2 cut(s) 99, 183
Hpy99I CGWCG 2 cut(s) 281, 572
HpyAV CCTTC 5 cut(s) 143, 262, 589, 610, 643
HpyCH4III ACNGT 2 cut(s) 187, 196
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 6 cut(s) 4, 39, 206, 222, 613, 776
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 387, 826
HpyF3I CTNAG 4 cut(s) 560, 654, 768, 786
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 2 cut(s) 274, 664
Kzo9I GATC 5 cut(s) 108, 235, 408, 619, 689
LguI GCTCTTC 1 cut(s) 418
LmnI GCTCC 3 cut(s) 214, 271, 598
Lsp1109I GCAGC 3 cut(s) 190, 218, 390
LweI GCATC 1 cut(s) 597
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 3 cut(s) 167, 370, 727
MalI GATC 5 cut(s) 110, 237, 410, 621, 691
MboI GATC 5 cut(s) 108, 235, 408, 619, 689
MboII GAAGA 4 cut(s) 403, 435, 784, 791
MflI RGATCY 3 cut(s) 108, 619, 689
MhlI GDGCHC 1 cut(s) 194
MlsI TGGCCA 1 cut(s) 72
MluCI AATT 3 cut(s) 54, 362, 489
MluNI TGGCCA 1 cut(s) 72
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 8 cut(s) 100, 131, 361, 439, 589, 633, 707, 753
Mox20I TGGCCA 1 cut(s) 72
MscI TGGCCA 1 cut(s) 72
MseI TTAA 2 cut(s) 528, 603
MslI CAYNNNNRTG 3 cut(s) 44, 197, 476
Msp20I TGGCCA 1 cut(s) 72
MspCI CTTAAG 1 cut(s) 602
MspI CCGG 1 cut(s) 432
MwoI GCNNNNNNNGC 3 cut(s) 248, 387, 826
NdeI CATATG 1 cut(s) 706
NdeII GATC 5 cut(s) 108, 235, 408, 619, 689
NlaIII CATG 2 cut(s) 274, 664
NlaIV GGNNCC 5 cut(s) 88, 131, 267, 621, 691
NmuCI GTSAC 2 cut(s) 167, 727
NspI RCATGY 1 cut(s) 664
PciI ACATGT 1 cut(s) 660
PciSI GCTCTTC 1 cut(s) 418
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PflMI CCANNNNNTGG 2 cut(s) 68, 710
PkrI GCNGC 3 cut(s) 205, 208, 380
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PpuMI RGGWCCY 2 cut(s) 87, 130
PscI ACATGT 1 cut(s) 660
PshAI GACNNNNGTC 2 cut(s) 174, 788
Psp5II RGGWCCY 2 cut(s) 87, 130
PspFI CCCAGC 2 cut(s) 13, 391
PspN4I GGNNCC 5 cut(s) 88, 131, 267, 621, 691
PspPI GGNCC 2 cut(s) 87, 130
PspPPI RGGWCCY 2 cut(s) 87, 130
PstI CTGCAG 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 3 cut(s) 108, 619, 689
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 3 cut(s) 44, 197, 476
SapI GCTCTTC 1 cut(s) 418
SaqAI TTAA 2 cut(s) 528, 603
SatI GCNGC 3 cut(s) 204, 207, 379
Sau3AI GATC 5 cut(s) 108, 235, 408, 619, 689
Sau96I GGNCC 2 cut(s) 87, 130
SchI GAGTC 1 cut(s) 184
SduI GDGCHC 1 cut(s) 194
SfaNI GCATC 1 cut(s) 597
SfcI CTRYAG 1 cut(s) 204
SinI GGWCC 2 cut(s) 87, 130
SmiMI CAYNNNNRTG 3 cut(s) 44, 197, 476
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
Sse9I AATT 3 cut(s) 54, 362, 489
SsiI CCGC 1 cut(s) 388
SspI AATATT 1 cut(s) 325
TaaI ACNGT 2 cut(s) 187, 196
TaiI ACGT 1 cut(s) 44
TaqI TCGA 3 cut(s) 136, 286, 465
TasI AATT 3 cut(s) 54, 362, 489
TatI WGTACW 1 cut(s) 182
Tru1I TTAA 2 cut(s) 528, 603
Tru9I TTAA 2 cut(s) 528, 603
TscAI CASTG 1 cut(s) 41
TseFI GTSAC 2 cut(s) 167, 727
TseI GCWGC 3 cut(s) 203, 206, 378
Tsp45I GTSAC 2 cut(s) 167, 727
TspDTI ATGAA 4 cut(s) 403, 482, 656, 725
TspGWI ACGGA 3 cut(s) 84, 168, 785
TspRI CASTG 1 cut(s) 41
Van91I CCANNNNNTGG 2 cut(s) 68, 710
Vha464I CTTAAG 1 cut(s) 602
VpaK11BI GGWCC 2 cut(s) 87, 130
XapI RAATTY 2 cut(s) 54, 489
XceI RCATGY 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.