Rh4AG203400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0018711
Physical Location & Seq
Reverse (-)
48906213 .. 48906497
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG203400.1

Sequence Viewer

Length: 285 bp
ATGTTTCAGGCTAGGGTGTTGGGAAGCGCCGCCGTCGCAGATGAGGTTCAGGGTGGCGGAGCAGTTGTCGTTGAAGCCCATTGGGAGTTTCGGCGTTGCCTTGTTGAAATCGCTGACCATGGAATCAATGAAGGGTTCACCGTAATGGGGCTCCGGTTGGGTGGTAGATCGGTTGTCCGGTTGAGCTGTGGATGTGATCTTCTGCACATCTGTGTTCTCCGTTGTGCAGGTGGTTTAAAGGAGGACCGAAGGAACCCCGATGAGGACGAAGTCGGGGAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.15

Weight (kDa)

5.06

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018711)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0047921
rosa_multiflora Rmu_sc0010407.1_g000017
rosa_rugosa Rorug03G0288700 Rorug03G0290500 Rorug03G0290500
rosa_samantha Rh4AG101600 Rh4AG203400 Rh4BG109200 Rh4CG109600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 218
AciI CCGC 2 cut(s) 30, 57
AfiI CCNNNNNNNGG 2 cut(s) 147, 262
AgsI TTSAA 2 cut(s) 74, 107
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 17
BfaI CTAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 30
BfuAI ACCTGC 1 cut(s) 218
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 2 cut(s) 152, 254
BsaJI CCNNGG 1 cut(s) 118
BsaWI WCCGGW 2 cut(s) 153, 177
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 262
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 2 cut(s) 147, 262
BsgI GTGCAG 2 cut(s) 188, 246
BsiSI CCGG 2 cut(s) 154, 178
BslI CCNNNNNNNGG 2 cut(s) 147, 262
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 167, 196
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 2 cut(s) 30, 57
BspLI GGNNCC 2 cut(s) 152, 254
BspMI ACCTGC 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 2 cut(s) 167, 196
BssT1I CCWWGG 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 142, 282
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 197
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 2 cut(s) 170, 199
BstMBI GATC 2 cut(s) 167, 196
BstMWI GCNNNNNNNGC 1 cut(s) 35
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 1 cut(s) 197
BveI ACCTGC 1 cut(s) 218
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 244
CviAII CATG 1 cut(s) 119
CviJI RGCY 4 cut(s) 11, 77, 151, 186
CviKI_1 RGCY 4 cut(s) 11, 77, 151, 186
DpnI GATC 2 cut(s) 169, 198
DpnII GATC 2 cut(s) 167, 196
DraI TTTAAA 1 cut(s) 237
EciI GGCGGA 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 1 cut(s) 122
FaiI YATR 1 cut(s) 120
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 1 cut(s) 204
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 30
HaeII RGCGCY 1 cut(s) 30
HapII CCGG 2 cut(s) 154, 178
HhaI GCGC 1 cut(s) 29
Hin1II CATG 1 cut(s) 122
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 1 cut(s) 123
HpaII CCGG 2 cut(s) 154, 178
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 125, 243
HpyCH4III ACNGT 2 cut(s) 142, 282
HpyCH4V TGCA 2 cut(s) 205, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
Hsp92II CATG 1 cut(s) 122
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 167, 196
LmnI GCTCC 2 cut(s) 59, 156
LpnPI CCDG 4 cut(s) 35, 167, 191, 213
MaeI CTAG 1 cut(s) 12
MalI GATC 2 cut(s) 169, 198
MboI GATC 2 cut(s) 167, 196
MboII GAAGA 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 153
MnlI CCTC 3 cut(s) 37, 235, 256
MseI TTAA 1 cut(s) 236
MslI CAYNNNNRTG 2 cut(s) 143, 210
MspI CCGG 2 cut(s) 154, 178
MwoI GCNNNNNNNGC 1 cut(s) 35
NcoI CCATGG 1 cut(s) 118
NdeII GATC 2 cut(s) 167, 196
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 2 cut(s) 152, 254
OliI CACNNNNGTG 1 cut(s) 210
PaqCI CACCTGC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 123
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 152, 254
PspPI GGNCC 1 cut(s) 244
PsyI GACNNNGTC 1 cut(s) 269
RseI CAYNNNNRTG 2 cut(s) 143, 210
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 167, 196
Sau96I GGNCC 1 cut(s) 244
SduI GDGCHC 1 cut(s) 153
SetI ASST 3 cut(s) 48, 188, 232
SgeI CNNG 9 cut(s) 20, 24, 62, 113, 131, 166, 190, 240, 269
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 2 cut(s) 143, 210
SsiI CCGC 2 cut(s) 30, 57
SspMI CTAG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 2 cut(s) 142, 282
TaqII GACCGA 1 cut(s) 261
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TspDTI ATGAA 1 cut(s) 144
TspGWI ACGGA 1 cut(s) 209
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 244
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.