Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018711

Physical Location & Seq

Genomic Coordinates Reverse (-)

20575568 .. 20591934

Gene Structure 16367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG109600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGAGTTCTGTGGCTAAGGACATGTTTCATTGGCAAGCAACGATTATGGGATCCCCTGATAGCCCATATGCTGGAGGTGTGTTCCTTGTCACCATTAATTTCCCTCCTGACTATCCTTTCAAACCACCTAAGGTTGCATTTAGGACTAAGGTCTTATGTCTTCCATCCATATACCAACAGCAATGGAAGCATTTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

66

Amino Acids

7.5

Weight (kDa)

9.3

Isoelectric Point (pI)

56.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	6 - 52	1e-16	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018711)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0047921
rosa_multiflora	Rmu_sc0010407.1_g000017
rosa_rugosa	Rorug03G0288700 Rorug03G0290500 Rorug03G0290500
rosa_samantha	Rh4AG101600 Rh4AG203400 Rh4BG109200 Rh4CG109600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	71
AclWI	GGATC	2 cut(s)	45, 58
AfiI	CCNNNNNNNGG	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	121
AlwI	GGATC	2 cut(s)	45, 58
AseI	ATTAAT	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	82
AxyI	CCTNAGG	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	152
BccI	CCATC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	52
BoxI	GACNNNNGTC	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse21I	CCTNAGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	52
BspPI	GGATC	2 cut(s)	45, 58
BsrDI	GCAATG	1 cut(s)	188
BssMI	GATC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	3 cut(s)	15, 129, 147
BstF5I	GGATG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNSI	RCATGY	1 cut(s)	25
BstPAI	GACNNNNGTC	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
Bsu36I	CCTNAGG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	36
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	2 cut(s)	14, 63
CviKI_1	RGCY	2 cut(s)	14, 63
DdeI	CTNAG	3 cut(s)	15, 129, 147
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	129
FaeI	CATG	1 cut(s)	25
FaiI	YATR	7 cut(s)	23, 47, 67, 69, 157, 170, 172
FatI	CATG	1 cut(s)	21
FauNDI	CATATG	1 cut(s)	67
FokI	GGATG	1 cut(s)	151
GsuI	CTGGAG	1 cut(s)	93
Hin1II	CATG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	82
Hpy188III	TCNNGA	2 cut(s)	107, 198
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	3 cut(s)	15, 129, 147
Hsp92II	CATG	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	50
LpnPI	CCDG	3 cut(s)	57, 69, 120
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MboII	GAAGA	1 cut(s)	152
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	1 cut(s)	97
MnlI	CCTC	2 cut(s)	68, 114
MseI	TTAA	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	187
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	25
PciI	ACATGT	1 cut(s)	21
PflMI	CCANNNNNTGG	1 cut(s)	71
PscI	ACATGT	1 cut(s)	21
PshAI	GACNNNNGTC	1 cut(s)	149
PshBI	ATTAAT	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	50
SetI	ASST	4 cut(s)	79, 130, 135, 153
SgeI	CNNG	6 cut(s)	34, 47, 68, 84, 98, 119
Sse9I	AATT	1 cut(s)	97
TasI	AATT	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	71
VspI	ATTAAT	1 cut(s)	96
XceI	RCATGY	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.