RchiOBHm_Chr5g0065241

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0019413
Physical Location & Seq
Forward (+)
71101524 .. 71105202
3679 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1065 bp
ATGTCTCAAGATTCAGGGTTGAGAGCGCCGTGTCACGGTTCAGAAACAATGAATATTAGAATGCTGCAAACCAGTGCACGTGGCTACCTTGAAAAGGCATTGTCGGAGCAGGAAAAGGCATTCCTAGAGCAGGATGAAGCCTTGTTAAGATCCGAAGCACAGAAGAAAGATTTGAAGAAACAGCTTGAGGAGAGTGAAGCTCAGAACAAAGTGCTTAAGAAACAGCTTGAGGAGAATGTTGCTCAGAATAAAGTGCTTGCACAGCGTGAGAAGCAACTACAACAATGGAATAACAGCATTATGTTGGAGAAGAAGAAGGCAGATGAAAAGGTGTTGCTGCTTTCAGAAGAACATAAGAGAGAAAAGAATGAATTGTTTAGAACAATCATTGAATTGGAAAAGCAGCTTGACGTCAAAAGTACATTGGCGCTAGAGATTGAGCGTATAAGAGGTGCTTTATTGTTAATCAAACAAATGCATGAAGATGGGGATTTGCAAGGGCGAAATAAGATGAATAAGTTTCAGGAACTGTTAAAGAAGAAGGAAGAGGACTTGACCATGGTAGAACTTATTGTCAAGGAGTGGATAAGTAATGATGAAATTCAGGAAGCTCAGAAGGAGTTGATCATTGGACTGTGGGATTCATCAAACCAGGCATTTATTCATGTGGAGAGAGTGGGAGTTGACATCAATCCATTTCAGACTACAACCAGCAGAAATTTTTTCGAAGAAGCAAATATTGAATTGTTGGAGTTGTGGTCTTTATGGGCCGAGTATACTAGGGACGAGAGCTGGCACCCATTCAAGGTTATTGTGGATAAAGTAGGAAATGCAAAGGAAATTATTGATGAGGAGGATGCCACATTGAAATTTATAATGAACGAGTTTGATGAAGAATTTTACAAGTTTGTCACAACTGCCTTGGTCAAAGTGAACGAGAATGAGAACAAGAATGATCCCAGTTATAATCATATAAGACCCGTGATGTGGAACTGTAAGACAGGGAGGAGGGCTACAGTTAGAGATTTATATTTGAAAGCGGTGGATTGGTGGAACAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XH

Protein Analysis

354

Amino Acids

41.64

Weight (kDa)

5.29

Isoelectric Point (pI)

57.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 228 - 349 1.1e-23 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019413)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0065241
rosa_laevigata RLG00000035770
rosa_multiflora Rmu_sc0005450.1_g000001
rosa_roxburghii Rroxscaffold_1G00016070
rosa_rugosa Rorug05G0369700
rosa_samantha Rh5AG428000 Rh5CG465700
rosa_wichuraiana Rw5G040170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 875, 966
AatII GACGTC 1 cut(s) 414
AccB1I GGYRCC 1 cut(s) 795
AccI GTMKAC 1 cut(s) 776
AciI CCGC 1 cut(s) 1040
AclWI GGATC 2 cut(s) 144, 950
AcsI RAATTY 4 cut(s) 600, 718, 869, 896
AcvI CACGTG 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 411
AdeI CACNNNGTG 1 cut(s) 266
AfaI GTAC 1 cut(s) 421
AfiI CCNNNNNNNGG 5 cut(s) 35, 94, 130, 805, 987
AflII CTTAAG 1 cut(s) 215
AgsI TTSAA 7 cut(s) 92, 175, 392, 743, 805, 868, 1036
AjnI CCWGG 1 cut(s) 651
AluBI AGCT 6 cut(s) 184, 200, 226, 406, 611, 792
AluI AGCT 6 cut(s) 184, 200, 226, 406, 611, 792
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 9
Alw44I GTGCAC 1 cut(s) 75
AlwI GGATC 2 cut(s) 144, 950
AlwNI CAGNNNCTG 1 cut(s) 529
AoxI GGCC 1 cut(s) 768
ApaLI GTGCAC 1 cut(s) 75
ApeKI GCWGC 3 cut(s) 64, 337, 403
ApoI RAATTY 4 cut(s) 600, 718, 869, 896
AspLEI GCGC 2 cut(s) 28, 430
AspS9I GGNCC 1 cut(s) 768
AsuII TTCGAA 1 cut(s) 726
BaeGI GKGCMC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 795
BbrPI CACGTG 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 3 cut(s) 51, 324, 415
BccI CCATC 1 cut(s) 479
BceAI ACGGC 1 cut(s) 13
BciT130I CCWGG 1 cut(s) 653
BclI TGATCA 1 cut(s) 624
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 3 cut(s) 125, 431, 780
BfmI CTRYAG 1 cut(s) 1014
BfoI RGCGCY 2 cut(s) 29, 431
BfrI CTTAAG 1 cut(s) 215
BisI GCNGC 3 cut(s) 65, 338, 404
BlsI GCNGC 3 cut(s) 66, 339, 405
Bme1390I CCNGG 1 cut(s) 653
BmgT120I GGNCC 1 cut(s) 768
BmiI GGNNCC 1 cut(s) 797
BmrFI CCNGG 1 cut(s) 653
BmrI ACTGGG 1 cut(s) 954
BmsI GCATC 1 cut(s) 847
BmuI ACTGGG 1 cut(s) 954
BplI GAGNNNNNCTC 2 cut(s) 184, 216
Bpu14I TTCGAA 1 cut(s) 726
BpuEI CTTGAG 2 cut(s) 206, 248
BsaAI YACGTR 1 cut(s) 80
BsaHI GRCGYC 1 cut(s) 411
BsaJI CCNNGG 2 cut(s) 558, 921
BsaXI ACNNNNNCTCC 2 cut(s) 743, 773
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 94, 130, 805, 987
Bse1I ACTGG 2 cut(s) 72, 960
BseBI CCWGG 1 cut(s) 653
BseDI CCNNGG 2 cut(s) 558, 921
BseGI GGATG 2 cut(s) 139, 862
BseLI CCNNNNNNNGG 5 cut(s) 35, 94, 130, 805, 987
BseMII CTCAG 3 cut(s) 215, 257, 626
BseNI ACTGG 2 cut(s) 72, 960
BseRI GAGGAG 4 cut(s) 203, 245, 866, 1021
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 3 cut(s) 51, 324, 415
BshFI GGCC 1 cut(s) 770
BshNI GGYRCC 1 cut(s) 795
BsiHKAI GWGCWC 1 cut(s) 79
BslFI GGGAC 1 cut(s) 797
BslI CCNNNNNNNGG 5 cut(s) 35, 94, 130, 805, 987
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 797
BsmI GAATGC 2 cut(s) 66, 119
BsnI GGCC 1 cut(s) 770
Bsp119I TTCGAA 1 cut(s) 726
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 3 cut(s) 149, 624, 955
Bsp19I CCATGG 1 cut(s) 558
BspACI CCGC 1 cut(s) 1040
BspANI GGCC 1 cut(s) 770
BspCNI CTCAG 3 cut(s) 214, 256, 625
BspLI GGNNCC 1 cut(s) 797
BspPI GGATC 2 cut(s) 144, 950
BspT104I TTCGAA 1 cut(s) 726
BspT107I GGYRCC 1 cut(s) 795
BspTI CTTAAG 1 cut(s) 215
BsrI ACTGG 2 cut(s) 72, 960
BssECI CCNNGG 2 cut(s) 558, 921
BssMI GATC 3 cut(s) 149, 624, 955
BssNAI GTATAC 1 cut(s) 777
BssNI GRCGYC 1 cut(s) 411
BssT1I CCWWGG 2 cut(s) 558, 921
Bst1107I GTATAC 1 cut(s) 777
Bst2UI CCWGG 1 cut(s) 653
Bst4CI ACNGT 5 cut(s) 38, 531, 636, 995, 1018
Bst6I CTCTTC 1 cut(s) 540
BstACI GRCGYC 1 cut(s) 411
BstAFI CTTAAG 1 cut(s) 215
BstBAI YACGTR 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 726
BstC8I GCNNGC 2 cut(s) 258, 794
BstDEI CTNAG 3 cut(s) 201, 243, 612
BstDSI CCRYGG 1 cut(s) 558
BstENI CCTNNNNNAGG 2 cut(s) 92, 128
BstF5I GGATG 2 cut(s) 139, 862
BstH2I RGCGCY 2 cut(s) 29, 431
BstHHI GCGC 2 cut(s) 28, 430
BstKTI GATC 3 cut(s) 152, 627, 958
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 149, 624, 955
BstMWI GCNNNNNNNGC 2 cut(s) 262, 271
BstNI CCWGG 1 cut(s) 653
BstSCI CCNGG 1 cut(s) 651
BstSFI CTRYAG 1 cut(s) 1014
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 3 cut(s) 51, 324, 415
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BstZ17I GTATAC 1 cut(s) 777
BsuRI GGCC 1 cut(s) 770
BtgI CCRYGG 1 cut(s) 558
BtsCI GGATG 2 cut(s) 139, 862
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 258, 794
CaiI CAGNNNCTG 1 cut(s) 529
CfoI GCGC 2 cut(s) 28, 430
Cfr13I GGNCC 1 cut(s) 768
Csp6I GTAC 1 cut(s) 420
CviAII CATG 3 cut(s) 479, 559, 665
CviQI GTAC 1 cut(s) 420
DdeI CTNAG 3 cut(s) 201, 243, 612
DpnI GATC 3 cut(s) 151, 626, 957
DpnII GATC 3 cut(s) 149, 624, 955
DraIII CACNNNGTG 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Eco130I CCWWGG 2 cut(s) 558, 921
Eco72I CACGTG 1 cut(s) 80
EcoNI CCTNNNNNAGG 2 cut(s) 92, 128
EcoRII CCWGG 1 cut(s) 651
EcoT14I CCWWGG 2 cut(s) 558, 921
EcoT22I ATGCAT 1 cut(s) 480
ErhI CCWWGG 2 cut(s) 558, 921
FaeI CATG 3 cut(s) 482, 562, 668
FalI AAGNNNNNCTT 2 cut(s) 439, 471
FaqI GGGAC 1 cut(s) 797
FatI CATG 3 cut(s) 478, 558, 664
FbaI TGATCA 1 cut(s) 624
FblI GTMKAC 1 cut(s) 776
Fnu4HI GCNGC 3 cut(s) 65, 338, 404
FokI GGATG 2 cut(s) 146, 869
Fsp4HI GCNGC 3 cut(s) 65, 338, 404
FspBI CTAG 3 cut(s) 125, 431, 780
GlaI GCGC 2 cut(s) 27, 429
GluI GCNGC 3 cut(s) 65, 338, 404
HaeII RGCGCY 2 cut(s) 29, 431
HaeIII GGCC 1 cut(s) 770
HhaI GCGC 2 cut(s) 28, 430
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 3 cut(s) 482, 562, 668
Hin6I GCGC 2 cut(s) 26, 428
HinP1I GCGC 2 cut(s) 26, 428
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HinfI GANTC 2 cut(s) 11, 641
Hpy166II GTNNAC 4 cut(s) 77, 685, 777, 934
Hpy188I TCNGA 8 cut(s) 43, 106, 154, 204, 246, 346, 615, 702
Hpy188III TCNNGA 3 cut(s) 8, 524, 605
Hpy8I GTNNAC 4 cut(s) 77, 685, 777, 934
HpyAV CCTTC 3 cut(s) 310, 535, 610
HpyCH4III ACNGT 5 cut(s) 38, 531, 636, 995, 1018
HpyCH4IV ACGT 2 cut(s) 79, 411
HpyCH4V TGCA 6 cut(s) 67, 77, 260, 478, 496, 833
HpyF10VI GCNNNNNNNGC 2 cut(s) 262, 271
HpyF3I CTNAG 3 cut(s) 201, 243, 612
HpySE526I ACGT 2 cut(s) 79, 411
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 3 cut(s) 482, 562, 668
HspAI GCGC 2 cut(s) 26, 428
Ksp22I TGATCA 1 cut(s) 624
Kzo9I GATC 3 cut(s) 149, 624, 955
LmnI GCTCC 1 cut(s) 106
Lsp1109I GCAGC 3 cut(s) 51, 324, 415
LweI GCATC 1 cut(s) 847
MaeI CTAG 3 cut(s) 125, 431, 780
MaeII ACGT 2 cut(s) 79, 411
MaeIII GTNAC 2 cut(s) 32, 910
MalI GATC 3 cut(s) 151, 626, 957
MboI GATC 3 cut(s) 149, 624, 955
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 8 cut(s) 371, 392, 600, 718, 743, 840, 869, 896
MmeI TCCRAC 3 cut(s) 84, 285, 729
MnlI CCTC 8 cut(s) 181, 223, 443, 541, 844, 847, 999, 1002
Mph1103I ATGCAT 1 cut(s) 480
MseI TTAA 4 cut(s) 146, 216, 464, 533
MslI CAYNNNNRTG 1 cut(s) 483
MspCI CTTAAG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 653
Mva1269I GAATGC 2 cut(s) 66, 119
MvaI CCWGG 1 cut(s) 653
MwoI GCNNNNNNNGC 2 cut(s) 262, 271
NcoI CCATGG 1 cut(s) 558
NdeII GATC 3 cut(s) 149, 624, 955
NlaIII CATG 3 cut(s) 482, 562, 668
NlaIV GGNNCC 1 cut(s) 797
NmeAIII GCCGAG 1 cut(s) 796
NmuCI GTSAC 2 cut(s) 32, 910
NsiI ATGCAT 1 cut(s) 480
NspV TTCGAA 1 cut(s) 726
PctI GAATGC 2 cut(s) 66, 119
PfeI GAWTC 2 cut(s) 11, 641
PkrI GCNGC 3 cut(s) 66, 339, 405
PmaCI CACGTG 1 cut(s) 80
PmlI CACGTG 1 cut(s) 80
Ppu21I YACGTR 1 cut(s) 80
PsiI TTATAA 2 cut(s) 875, 966
Psp6I CCWGG 1 cut(s) 651
PspCI CACGTG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 651
PspN4I GGNNCC 1 cut(s) 797
PspPI GGNCC 1 cut(s) 768
PstNI CAGNNNCTG 1 cut(s) 529
PsuI RGATCY 1 cut(s) 149
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
RseI CAYNNNNRTG 1 cut(s) 483
SaqAI TTAA 4 cut(s) 146, 216, 464, 533
SatI GCNGC 3 cut(s) 65, 338, 404
Sau3AI GATC 3 cut(s) 149, 624, 955
Sau96I GGNCC 1 cut(s) 768
ScrFI CCNGG 1 cut(s) 653
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 1 cut(s) 847
SfcI CTRYAG 1 cut(s) 1014
SfuI TTCGAA 1 cut(s) 726
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 4 cut(s) 6, 185, 215, 227
SmoI CTYRAG 4 cut(s) 6, 185, 215, 227
Sse9I AATT 8 cut(s) 371, 392, 600, 718, 743, 840, 869, 896
SsiI CCGC 1 cut(s) 1040
SspI AATATT 2 cut(s) 55, 739
SspMI CTAG 3 cut(s) 125, 431, 780
StyD4I CCNGG 1 cut(s) 651
StyI CCWWGG 2 cut(s) 558, 921
TaaI ACNGT 5 cut(s) 38, 531, 636, 995, 1018
TaiI ACGT 2 cut(s) 82, 414
TaqI TCGA 1 cut(s) 726
TasI AATT 8 cut(s) 371, 392, 600, 718, 743, 840, 869, 896
TatI WGTACW 1 cut(s) 419
TfiI GAWTC 2 cut(s) 11, 641
Tru1I TTAA 4 cut(s) 146, 216, 464, 533
Tru9I TTAA 4 cut(s) 146, 216, 464, 533
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 2 cut(s) 32, 910
TseI GCWGC 3 cut(s) 64, 337, 403
Tsp45I GTSAC 2 cut(s) 32, 910
TspRI CASTG 1 cut(s) 79
Vha464I CTTAAG 1 cut(s) 215
VneI GTGCAC 1 cut(s) 75
XagI CCTNNNNNAGG 2 cut(s) 92, 128
XapI RAATTY 4 cut(s) 600, 718, 869, 896
XmiI GTMKAC 1 cut(s) 776
XspI CTAG 3 cut(s) 125, 431, 780
ZraI GACGTC 1 cut(s) 412
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.