RLG00000035770

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019413
Physical Location & Seq
Forward (+)
71369229 .. 71372906
3678 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035770

Sequence Viewer

Length: 1203 bp
ATGGCGTTGGAATCTCAACCAAGTTTTTTGAAGAAATTTAAAACCTTACATAAGATGGATTCAAAACTAAAACAAGTTCTAATCTTTCTCCTATTTGGTGATTCCATTGGTTGGATTACTTCTGCAAAAGTCATAGACACGGTGTATTGCAGGTTCGAGATGTCTCAAGATTCAGGGTTGAGAGCGCTGTGTCACAGTTCAGAAATAATGAATATTAGAATGCTGCAAACCAGCGCACGTGGCTACCTTGAAAAGGCATTGTCGGAGCAGGAAAAGGCATTTTTAGAGCAGGATGAAGCCTTGAAAGTATCCGAAGCTCAGAAGAAAGATTTGAAGAAACAGCTTGAGGAGAGTGAAGCTCAGAACGAAGTGCTTAAGAAACAGCTTGAGCAGAGTGTTTCTCGGAATAAAGTGCTACAACAAAGGAATAACAGCATTATGTTGGAGAAGAAGAAGGCAGATGAAAAGGTGTTGCTGCTTTCAGAAGAACGTAAGAGAGAAAAGAATGAATTGTTTAGAACAATCATTGAATTGGAAAAGCAGCTTGACATCAAAAGTACGTTGGCGCTAGAGATTGAGCGCATAAGAGGTGCTTTATTGTTAATCAAACAAATGCATGAAGATGGGGATTTGCAAGGGCGAAATAAGATGAATAAGTTTCAGGAACTGTTAAAGAAGAAGGAAGAGGACTTGACCATGGTAGAACTTATTGTCAAGGAGTGGATAAGTAGTGATGAAATTCAGGAAGCTCAGAAGGAGTTGATCATTGGACTGTGGGATTCATCAAACCAGGCATTTCTTCATGTAGAGAGAGTGGGAGTTGACATCAATCCCTTTCAGACTGCAACCAGCAGAAATTTTTTCAAAGAAGCAAATATTGAATTGTTGGAGTTGTGGTCTTTATGGGCCGATTATACTAGGGACGAGAGCTGGCACCCATTCAAGGTTATTGTGGATAATGTAGGAAATGCTAAGGAAATTATTGATGAGGAGGATGCCACATTGAAATTTATAATGAACGAGTTTGATGAAGAATTTTACAAGTTTGTCACAACTGCCTTGGTCAAAGTGAACGAGAATGAGAACAAGAATGATCCCAGTTATAATCATATAAGACCCGTGATGTGGAACTGTAAGACAGGGAGGAGAGCTACAGTTAGAGATATATATTTGAAAGCGGTGGATTGGTGGAACAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XH

Protein Analysis

401

Amino Acids

46.87

Weight (kDa)

5.68

Isoelectric Point (pI)

53.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 274 - 396 1e-23 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019413)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0065241
rosa_laevigata RLG00000035770
rosa_multiflora Rmu_sc0005450.1_g000001
rosa_roxburghii Rroxscaffold_1G00016070
rosa_rugosa Rorug05G0369700
rosa_samantha Rh5AG428000 Rh5CG465700
rosa_wichuraiana Rw5G040170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1013, 1104
Acc36I ACCTGC 1 cut(s) 141
AccB1I GGYRCC 1 cut(s) 933
AccB7I CCANNNNNTGG 1 cut(s) 111
AciI CCGC 1 cut(s) 1178
AclWI GGATC 1 cut(s) 1088
AcsI RAATTY 5 cut(s) 35, 738, 856, 1007, 1034
AcvI CACGTG 1 cut(s) 239
AfaI GTAC 1 cut(s) 559
AfeI AGCGCT 1 cut(s) 186
AfiI CCNNNNNNNGG 4 cut(s) 111, 253, 943, 1125
AflII CTTAAG 1 cut(s) 374
AjnI CCWGG 1 cut(s) 789
AluBI AGCT 8 cut(s) 317, 343, 359, 385, 544, 749, 930, 1151
AluI AGCT 8 cut(s) 317, 343, 359, 385, 544, 749, 930, 1151
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 1088
AlwNI CAGNNNCTG 1 cut(s) 667
Aor51HI AGCGCT 1 cut(s) 186
AoxI GGCC 1 cut(s) 906
ApeKI GCWGC 3 cut(s) 223, 475, 541
ApoI RAATTY 5 cut(s) 35, 738, 856, 1007, 1034
AspLEI GCGC 4 cut(s) 187, 236, 568, 582
AspS9I GGNCC 1 cut(s) 906
AsuHPI GGTGA 1 cut(s) 110
BanI GGYRCC 1 cut(s) 933
BbrPI CACGTG 1 cut(s) 239
BbvI GCAGC 3 cut(s) 210, 462, 553
BccI CCATC 2 cut(s) 49, 617
BciT130I CCWGG 1 cut(s) 791
BciVI GTATCC 1 cut(s) 319
BclI TGATCA 1 cut(s) 762
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 2 cut(s) 569, 918
BfmI CTRYAG 1 cut(s) 1152
BfoI RGCGCY 2 cut(s) 188, 569
BfrI CTTAAG 1 cut(s) 374
BfuAI ACCTGC 1 cut(s) 141
BfuI GTATCC 1 cut(s) 319
BisI GCNGC 3 cut(s) 224, 476, 542
BlsI GCNGC 3 cut(s) 225, 477, 543
Bme1390I CCNGG 1 cut(s) 791
BmgT120I GGNCC 1 cut(s) 906
BmiI GGNNCC 1 cut(s) 935
BmrFI CCNGG 1 cut(s) 791
BmrI ACTGGG 1 cut(s) 1092
BmsI GCATC 1 cut(s) 985
BmuI ACTGGG 1 cut(s) 1092
BplI GAGNNNNNCTC 4 cut(s) 343, 375, 385, 417
Bpu10I CCTNAGC 1 cut(s) 972
BpuEI CTTGAG 3 cut(s) 150, 365, 407
BsaAI YACGTR 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 696, 1059
BsaXI ACNNNNNCTCC 2 cut(s) 881, 911
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 253, 943, 1125
Bse1I ACTGG 1 cut(s) 1098
BseBI CCWGG 1 cut(s) 791
BseDI CCNNGG 2 cut(s) 696, 1059
BseGI GGATG 2 cut(s) 298, 1000
BseLI CCNNNNNNNGG 4 cut(s) 111, 253, 943, 1125
BseMII CTCAG 3 cut(s) 332, 374, 764
BseNI ACTGG 1 cut(s) 1098
BseRI GAGGAG 3 cut(s) 362, 1004, 1159
BseXI GCAGC 3 cut(s) 210, 462, 553
BshFI GGCC 1 cut(s) 908
BshNI GGYRCC 1 cut(s) 933
BslFI GGGAC 1 cut(s) 935
BslI CCNNNNNNNGG 4 cut(s) 111, 253, 943, 1125
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 935
BsmI GAATGC 1 cut(s) 225
BsnI GGCC 1 cut(s) 908
Bsp143I GATC 2 cut(s) 762, 1093
Bsp19I CCATGG 1 cut(s) 696
BspACI CCGC 1 cut(s) 1178
BspANI GGCC 1 cut(s) 908
BspCNI CTCAG 3 cut(s) 331, 373, 763
BspLI GGNNCC 1 cut(s) 935
BspMI ACCTGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 1088
BspT107I GGYRCC 1 cut(s) 933
BspTI CTTAAG 1 cut(s) 374
BsrI ACTGG 1 cut(s) 1098
BssECI CCNNGG 2 cut(s) 696, 1059
BssMI GATC 2 cut(s) 762, 1093
BssT1I CCWWGG 2 cut(s) 696, 1059
Bst2UI CCWGG 1 cut(s) 791
Bst4CI ACNGT 6 cut(s) 142, 197, 669, 774, 1133, 1156
Bst6I CTCTTC 1 cut(s) 678
BstAFI CTTAAG 1 cut(s) 374
BstBAI YACGTR 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 932
BstDEI CTNAG 4 cut(s) 318, 360, 750, 972
BstDSI CCRYGG 1 cut(s) 696
BstENI CCTNNNNNAGG 1 cut(s) 251
BstF5I GGATG 2 cut(s) 298, 1000
BstH2I RGCGCY 2 cut(s) 188, 569
BstHHI GCGC 4 cut(s) 187, 236, 568, 582
BstKTI GATC 2 cut(s) 765, 1096
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 2 cut(s) 762, 1093
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 1 cut(s) 791
BstSCI CCNGG 1 cut(s) 789
BstSFI CTRYAG 1 cut(s) 1152
BstV1I GCAGC 3 cut(s) 210, 462, 553
BsuI GTATCC 1 cut(s) 319
BsuRI GGCC 1 cut(s) 908
BtgI CCRYGG 1 cut(s) 696
BtsCI GGATG 2 cut(s) 298, 1000
BveI ACCTGC 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 932
CaiI CAGNNNCTG 1 cut(s) 667
CfoI GCGC 4 cut(s) 187, 236, 568, 582
Cfr13I GGNCC 1 cut(s) 906
Csp6I GTAC 1 cut(s) 558
CviAII CATG 3 cut(s) 617, 697, 803
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 4 cut(s) 318, 360, 750, 972
DpnI GATC 2 cut(s) 764, 1095
DpnII GATC 2 cut(s) 762, 1093
DraI TTTAAA 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 678
EarI CTCTTC 1 cut(s) 678
Eco130I CCWWGG 2 cut(s) 696, 1059
Eco47III AGCGCT 1 cut(s) 186
Eco72I CACGTG 1 cut(s) 239
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 789
EcoT14I CCWWGG 2 cut(s) 696, 1059
EcoT22I ATGCAT 1 cut(s) 618
ErhI CCWWGG 2 cut(s) 696, 1059
FaeI CATG 3 cut(s) 620, 700, 806
FalI AAGNNNNNCTT 2 cut(s) 577, 609
FaqI GGGAC 1 cut(s) 935
FatI CATG 3 cut(s) 616, 696, 802
FbaI TGATCA 1 cut(s) 762
Fnu4HI GCNGC 3 cut(s) 224, 476, 542
FokI GGATG 2 cut(s) 305, 1007
Fsp4HI GCNGC 3 cut(s) 224, 476, 542
FspBI CTAG 2 cut(s) 569, 918
GlaI GCGC 4 cut(s) 186, 235, 567, 581
GluI GCNGC 3 cut(s) 224, 476, 542
HaeII RGCGCY 2 cut(s) 188, 569
HaeIII GGCC 1 cut(s) 908
HhaI GCGC 4 cut(s) 187, 236, 568, 582
Hin1II CATG 3 cut(s) 620, 700, 806
Hin6I GCGC 4 cut(s) 185, 234, 566, 580
HinP1I GCGC 4 cut(s) 185, 234, 566, 580
HincII GTYRAC 1 cut(s) 823
HindII GTYRAC 1 cut(s) 823
HinfI GANTC 5 cut(s) 11, 59, 101, 170, 779
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 823, 1072
Hpy188I TCNGA 9 cut(s) 202, 265, 313, 321, 363, 405, 484, 753, 840
Hpy188III TCNNGA 4 cut(s) 157, 167, 662, 743
Hpy8I GTNNAC 2 cut(s) 823, 1072
HpyAV CCTTC 3 cut(s) 448, 673, 748
HpyCH4III ACNGT 6 cut(s) 142, 197, 669, 774, 1133, 1156
HpyCH4IV ACGT 3 cut(s) 238, 490, 560
HpyCH4V TGCA 6 cut(s) 125, 150, 226, 616, 634, 845
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 4 cut(s) 318, 360, 750, 972
HpySE526I ACGT 3 cut(s) 238, 490, 560
Hsp92II CATG 3 cut(s) 620, 700, 806
HspAI GCGC 4 cut(s) 185, 234, 566, 580
Ksp22I TGATCA 1 cut(s) 762
Kzo9I GATC 2 cut(s) 762, 1093
LmnI GCTCC 1 cut(s) 265
Lsp1109I GCAGC 3 cut(s) 210, 462, 553
LweI GCATC 1 cut(s) 985
MaeI CTAG 2 cut(s) 569, 918
MaeII ACGT 3 cut(s) 238, 490, 560
MaeIII GTNAC 2 cut(s) 191, 1048
MalI GATC 2 cut(s) 764, 1095
MboI GATC 2 cut(s) 762, 1093
MluCI AATT 9 cut(s) 35, 509, 530, 738, 856, 881, 978, 1007, 1034
MmeI TCCRAC 4 cut(s) 92, 243, 423, 867
MnlI CCTC 6 cut(s) 340, 581, 679, 982, 985, 1137
Mph1103I ATGCAT 1 cut(s) 618
MseI TTAA 4 cut(s) 39, 375, 602, 671
MslI CAYNNNNRTG 1 cut(s) 621
MspCI CTTAAG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 791
Mva1269I GAATGC 1 cut(s) 225
MvaI CCWGG 1 cut(s) 791
MwoI GCNNNNNNNGC 1 cut(s) 240
NcoI CCATGG 1 cut(s) 696
NdeII GATC 2 cut(s) 762, 1093
NlaIII CATG 3 cut(s) 620, 700, 806
NlaIV GGNNCC 1 cut(s) 935
NmuCI GTSAC 2 cut(s) 191, 1048
NsiI ATGCAT 1 cut(s) 618
PctI GAATGC 1 cut(s) 225
PfeI GAWTC 5 cut(s) 11, 59, 101, 170, 779
PflMI CCANNNNNTGG 1 cut(s) 111
PkrI GCNGC 3 cut(s) 225, 477, 543
PmaCI CACGTG 1 cut(s) 239
PmlI CACGTG 1 cut(s) 239
Ppu21I YACGTR 1 cut(s) 239
PsiI TTATAA 2 cut(s) 1013, 1104
Psp6I CCWGG 1 cut(s) 789
PspCI CACGTG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 789
PspN4I GGNNCC 1 cut(s) 935
PspPI GGNCC 1 cut(s) 906
PsrI GAACNNNNNNTAC 2 cut(s) 137, 169
PstNI CAGNNNCTG 1 cut(s) 667
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
RseI CAYNNNNRTG 1 cut(s) 621
SaqAI TTAA 4 cut(s) 39, 375, 602, 671
SatI GCNGC 3 cut(s) 224, 476, 542
Sau3AI GATC 2 cut(s) 762, 1093
Sau96I GGNCC 1 cut(s) 906
ScrFI CCNGG 1 cut(s) 791
SfaNI GCATC 1 cut(s) 985
SfcI CTRYAG 1 cut(s) 1152
SmiMI CAYNNNNRTG 1 cut(s) 621
SmlI CTYRAG 4 cut(s) 165, 344, 374, 386
SmoI CTYRAG 4 cut(s) 165, 344, 374, 386
Sse9I AATT 9 cut(s) 35, 509, 530, 738, 856, 881, 978, 1007, 1034
SsiI CCGC 1 cut(s) 1178
SspI AATATT 2 cut(s) 214, 877
SspMI CTAG 2 cut(s) 569, 918
StyD4I CCNGG 1 cut(s) 789
StyI CCWWGG 2 cut(s) 696, 1059
TaaI ACNGT 6 cut(s) 142, 197, 669, 774, 1133, 1156
TaiI ACGT 3 cut(s) 241, 493, 563
TaqI TCGA 1 cut(s) 156
TasI AATT 9 cut(s) 35, 509, 530, 738, 856, 881, 978, 1007, 1034
TfiI GAWTC 5 cut(s) 11, 59, 101, 170, 779
Tru1I TTAA 4 cut(s) 39, 375, 602, 671
Tru9I TTAA 4 cut(s) 39, 375, 602, 671
TseFI GTSAC 2 cut(s) 191, 1048
TseI GCWGC 3 cut(s) 223, 475, 541
Tsp45I GTSAC 2 cut(s) 191, 1048
Van91I CCANNNNNTGG 1 cut(s) 111
Vha464I CTTAAG 1 cut(s) 374
XagI CCTNNNNNAGG 1 cut(s) 251
XapI RAATTY 5 cut(s) 35, 738, 856, 1007, 1034
XspI CTAG 2 cut(s) 569, 918
Zsp2I ATGCAT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.