Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0019413

Physical Location & Seq

Genomic Coordinates Reverse (-)

20029256 .. 20033119

Gene Structure 3864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00016070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTCTCAAGATTCAGGGTTGATAGCGGTTTGTCACAGTTCAGAAATAATGAATATTAGAATGCTGCAAACCAATGCACGTGGCTACCTTGAAAAGGCATTGTTGGAGCAGGAAAAGGCATTCCTAGAGCATGATGAAGCCTTGTTAAGATCCGAAGCTCAGAAGAAAGATTTGAAGAAACAGCTTGAGGACAGTGAAGCTCGGAACGAAGTGCTTAAGAAACAGCTTCAGCAGAATGTTGCTCAGAATAAAGTGCTTGCACAGCGTGAGAAGCAACTACAACGATGGAATAACAGCATTATGTTGGAGAAGAAGAAGGCAGATGAAAAGGTGTTACTGCTTTCAGAAGAACATAAGAGTGAAAAGAATGAATTGTTTAGAACAATCATTGAATTGGAAAAGCAGCTTGACGTCAAAAGTACATTGGCGCTAGAGATTGAGCGTATAAGAGGTGCTTTATTGTTAATCAAACAAATGCATGAAGATGGGGATTTGCAAGGGCGAAATAAGATGAATAAGATTCAGGAATTGTTAAAGAAGAAGGAAGAGGACTTGACCATGGTAGAACTTATTGTCAAGGAGTGGATAAGTAATGATGAAATTCAGGAAGCTCAGAAGGAGTTGATCATTGGACTGTGGGATTCATCAAACCAGGCTTTTATTCATGTGAAGAGAGTGGGAGTTGACATCAATCCATTTCAGACTGCAACCAGCAGAAATTTTTTCAAAGAAGCAAATATTGAATTGTTGGAGTTGTGGTCTTTATGGGCTGATTATACCAGGGACGAGAGCTGGCACCCATTCAAAGTTATTGTGGATAAAGTAGGAAATGCAAAGGAAATTATTGATGAGGAGGATGCCACATTAAAATTTATAATGAACGAGTTTGATGAAGAATTTTACAAGTTTGTCACAACTGCCTTGGTCAAAGTGAACGAGAATGAGAACAAGAATGATCCCAGTTATAATCATATAAGACCCGTGATGTGGAACTGTAAGACAGGGAGGAGAGCTACAGTTAGAGATGTATATTTGAAAGCGGTGGATTGGTGGAACAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

354

Amino Acids

41.58

Weight (kDa)

5.62

Isoelectric Point (pI)

54.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	227 - 351	3.5e-24	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019413)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0065241
rosa_laevigata	RLG00000035770
rosa_multiflora	Rmu_sc0005450.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016070
rosa_rugosa	Rorug05G0369700
rosa_samantha	Rh5AG428000 Rh5CG465700
rosa_wichuraiana	Rw5G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	875, 966
AatII	GACGTC	1 cut(s)	414
AccB1I	GGYRCC	1 cut(s)	795
AciI	CCGC	2 cut(s)	26, 1040
AclWI	GGATC	2 cut(s)	144, 950
AcsI	RAATTY	4 cut(s)	600, 718, 869, 896
AcuI	CTGAAG	1 cut(s)	212
AcvI	CACGTG	1 cut(s)	80
AcyI	GRCGYC	1 cut(s)	411
AdeI	CACNNNGTG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	421
AfiI	CCNNNNNNNGG	2 cut(s)	94, 987
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	7 cut(s)	92, 175, 392, 727, 743, 805, 1036
AjnI	CCWGG	2 cut(s)	651, 779
AluBI	AGCT	8 cut(s)	158, 184, 200, 226, 406, 611, 792, 1013
AluI	AGCT	8 cut(s)	158, 184, 200, 226, 406, 611, 792, 1013
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	144, 950
ApeKI	GCWGC	2 cut(s)	64, 403
ApoI	RAATTY	4 cut(s)	600, 718, 869, 896
AspLEI	GCGC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	795
BbrPI	CACGTG	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	51, 415
BccI	CCATC	2 cut(s)	279, 479
BciT130I	CCWGG	2 cut(s)	653, 781
BclI	TGATCA	1 cut(s)	624
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	125, 431
BfmI	CTRYAG	1 cut(s)	1014
BfoI	RGCGCY	1 cut(s)	431
BfrI	CTTAAG	1 cut(s)	215
BisI	GCNGC	2 cut(s)	65, 404
BlsI	GCNGC	2 cut(s)	66, 405
Bme1390I	CCNGG	2 cut(s)	653, 781
BmiI	GGNNCC	1 cut(s)	797
BmrFI	CCNGG	2 cut(s)	653, 781
BmrI	ACTGGG	1 cut(s)	954
BmsI	GCATC	1 cut(s)	847
BmuI	ACTGGG	1 cut(s)	954
BpuEI	CTTGAG	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	558, 780, 921
BsaXI	ACNNNNNCTCC	2 cut(s)	743, 773
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 987
Bse1I	ACTGG	1 cut(s)	960
BseBI	CCWGG	2 cut(s)	653, 781
BseDI	CCNNGG	3 cut(s)	558, 780, 921
BseGI	GGATG	1 cut(s)	862
BseLI	CCNNNNNNNGG	2 cut(s)	94, 987
BseMII	CTCAG	3 cut(s)	173, 257, 626
BseNI	ACTGG	1 cut(s)	960
BseRI	GAGGAG	2 cut(s)	866, 1021
BseXI	GCAGC	2 cut(s)	51, 415
BshNI	GGYRCC	1 cut(s)	795
BslFI	GGGAC	1 cut(s)	797
BslI	CCNNNNNNNGG	2 cut(s)	94, 987
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	797
BsmI	GAATGC	2 cut(s)	66, 119
Bsp143I	GATC	3 cut(s)	149, 624, 955
Bsp19I	CCATGG	1 cut(s)	558
BspACI	CCGC	2 cut(s)	26, 1040
BspCNI	CTCAG	3 cut(s)	172, 256, 625
BspLI	GGNNCC	1 cut(s)	797
BspPI	GGATC	2 cut(s)	144, 950
BspT107I	GGYRCC	1 cut(s)	795
BspTI	CTTAAG	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	960
BssECI	CCNNGG	3 cut(s)	558, 780, 921
BssMI	GATC	3 cut(s)	149, 624, 955
BssNI	GRCGYC	1 cut(s)	411
BssT1I	CCWWGG	2 cut(s)	558, 921
Bst2UI	CCWGG	2 cut(s)	653, 781
Bst4CI	ACNGT	5 cut(s)	38, 194, 636, 995, 1018
Bst6I	CTCTTC	2 cut(s)	540, 665
BstACI	GRCGYC	1 cut(s)	411
BstAFI	CTTAAG	1 cut(s)	215
BstBAI	YACGTR	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	258, 794
BstDEI	CTNAG	3 cut(s)	159, 243, 612
BstDSI	CCRYGG	1 cut(s)	558
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	862
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	3 cut(s)	152, 627, 958
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	149, 624, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 271
BstNI	CCWGG	2 cut(s)	653, 781
BstSCI	CCNGG	2 cut(s)	651, 779
BstSFI	CTRYAG	1 cut(s)	1014
BstV1I	GCAGC	2 cut(s)	51, 415
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	558
BtsCI	GGATG	1 cut(s)	862
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	258, 794
CfoI	GCGC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	420
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	4 cut(s)	131, 479, 559, 665
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	3 cut(s)	159, 243, 612
DpnI	GATC	3 cut(s)	151, 626, 957
DpnII	GATC	3 cut(s)	149, 624, 955
DraIII	CACNNNGTG	1 cut(s)	266
Eam1104I	CTCTTC	2 cut(s)	540, 665
EarI	CTCTTC	2 cut(s)	540, 665
Eco130I	CCWWGG	2 cut(s)	558, 921
Eco57I	CTGAAG	1 cut(s)	212
Eco72I	CACGTG	1 cut(s)	80
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	651, 779
EcoT14I	CCWWGG	2 cut(s)	558, 921
EcoT22I	ATGCAT	1 cut(s)	480
ErhI	CCWWGG	2 cut(s)	558, 921
FaeI	CATG	4 cut(s)	134, 482, 562, 668
FalI	AAGNNNNNCTT	2 cut(s)	439, 471
FaqI	GGGAC	1 cut(s)	797
FatI	CATG	4 cut(s)	130, 478, 558, 664
FbaI	TGATCA	1 cut(s)	624
Fnu4HI	GCNGC	2 cut(s)	65, 404
FokI	GGATG	1 cut(s)	869
Fsp4HI	GCNGC	2 cut(s)	65, 404
FspBI	CTAG	2 cut(s)	125, 431
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	2 cut(s)	65, 404
HaeII	RGCGCY	1 cut(s)	431
HhaI	GCGC	1 cut(s)	430
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	4 cut(s)	134, 482, 562, 668
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HinfI	GANTC	3 cut(s)	11, 520, 641
Hpy166II	GTNNAC	2 cut(s)	685, 934
Hpy188I	TCNGA	8 cut(s)	43, 154, 162, 204, 246, 346, 615, 702
Hpy188III	TCNNGA	3 cut(s)	8, 524, 605
Hpy8I	GTNNAC	2 cut(s)	685, 934
HpyAV	CCTTC	3 cut(s)	310, 535, 610
HpyCH4III	ACNGT	5 cut(s)	38, 194, 636, 995, 1018
HpyCH4IV	ACGT	2 cut(s)	79, 411
HpyCH4V	TGCA	7 cut(s)	67, 77, 260, 478, 496, 707, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 271
HpyF3I	CTNAG	3 cut(s)	159, 243, 612
HpySE526I	ACGT	2 cut(s)	79, 411
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	4 cut(s)	134, 482, 562, 668
HspAI	GCGC	1 cut(s)	428
Ksp22I	TGATCA	1 cut(s)	624
Kzo9I	GATC	3 cut(s)	149, 624, 955
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	2 cut(s)	51, 415
LweI	GCATC	1 cut(s)	847
MaeI	CTAG	2 cut(s)	125, 431
MaeII	ACGT	2 cut(s)	79, 411
MaeIII	GTNAC	3 cut(s)	32, 333, 910
MalI	GATC	3 cut(s)	151, 626, 957
MboI	GATC	3 cut(s)	149, 624, 955
MflI	RGATCY	1 cut(s)	149
MluCI	AATT	9 cut(s)	371, 392, 527, 600, 718, 743, 840, 869, 896
MmeI	TCCRAC	3 cut(s)	84, 285, 729
MnlI	CCTC	6 cut(s)	181, 443, 541, 844, 847, 999
Mph1103I	ATGCAT	1 cut(s)	480
MseI	TTAA	5 cut(s)	146, 216, 464, 533, 866
MslI	CAYNNNNRTG	2 cut(s)	357, 483
MspCI	CTTAAG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	653, 781
Mva1269I	GAATGC	2 cut(s)	66, 119
MvaI	CCWGG	2 cut(s)	653, 781
MwoI	GCNNNNNNNGC	2 cut(s)	262, 271
NcoI	CCATGG	1 cut(s)	558
NdeII	GATC	3 cut(s)	149, 624, 955
NlaIII	CATG	4 cut(s)	134, 482, 562, 668
NlaIV	GGNNCC	1 cut(s)	797
NmuCI	GTSAC	2 cut(s)	32, 910
NsiI	ATGCAT	1 cut(s)	480
PctI	GAATGC	2 cut(s)	66, 119
PfeI	GAWTC	3 cut(s)	11, 520, 641
PkrI	GCNGC	2 cut(s)	66, 405
PmaCI	CACGTG	1 cut(s)	80
PmlI	CACGTG	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	80
PsiI	TTATAA	2 cut(s)	875, 966
Psp6I	CCWGG	2 cut(s)	651, 779
PspCI	CACGTG	1 cut(s)	80
PspGI	CCWGG	2 cut(s)	651, 779
PspN4I	GGNNCC	1 cut(s)	797
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
RseI	CAYNNNNRTG	2 cut(s)	357, 483
SaqAI	TTAA	5 cut(s)	146, 216, 464, 533, 866
SatI	GCNGC	2 cut(s)	65, 404
Sau3AI	GATC	3 cut(s)	149, 624, 955
ScrFI	CCNGG	2 cut(s)	653, 781
SfaNI	GCATC	1 cut(s)	847
SfcI	CTRYAG	1 cut(s)	1014
SmiMI	CAYNNNNRTG	2 cut(s)	357, 483
SmlI	CTYRAG	3 cut(s)	6, 185, 215
SmoI	CTYRAG	3 cut(s)	6, 185, 215
Sse9I	AATT	9 cut(s)	371, 392, 527, 600, 718, 743, 840, 869, 896
SsiI	CCGC	2 cut(s)	26, 1040
SspI	AATATT	2 cut(s)	55, 739
SspMI	CTAG	2 cut(s)	125, 431
StyD4I	CCNGG	2 cut(s)	651, 779
StyI	CCWWGG	2 cut(s)	558, 921
TaaI	ACNGT	5 cut(s)	38, 194, 636, 995, 1018
TaiI	ACGT	2 cut(s)	82, 414
TasI	AATT	9 cut(s)	371, 392, 527, 600, 718, 743, 840, 869, 896
TatI	WGTACW	1 cut(s)	419
TfiI	GAWTC	3 cut(s)	11, 520, 641
Tru1I	TTAA	5 cut(s)	146, 216, 464, 533, 866
Tru9I	TTAA	5 cut(s)	146, 216, 464, 533, 866
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	2 cut(s)	32, 910
TseI	GCWGC	2 cut(s)	64, 403
Tsp45I	GTSAC	2 cut(s)	32, 910
TspRI	CASTG	1 cut(s)	199
Vha464I	CTTAAG	1 cut(s)	215
XagI	CCTNNNNNAGG	1 cut(s)	92
XapI	RAATTY	4 cut(s)	600, 718, 869, 896
XspI	CTAG	2 cut(s)	125, 431
ZraI	GACGTC	1 cut(s)	412
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.