Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0019413

Physical Location & Seq

Genomic Coordinates Reverse (-)

49545970 .. 49548269

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0369700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGAGCATCCCCAGCAGCCAAAAAGAAGAGTGGCATTTTTGTTGATTGATGGTGTGGGCGATGTGTCAATACCAAAGTTGGGATTTAAGACTCCTCTTCAGGTGGCCAAACTGCCGAATTTGGATGCCATAGCGTCTGATGGAGTTAATGCTCTGATGGACCCTGTTGAAGTTGGTCTGGGTTGTGGAAGTGACACATCCCATCTTTCTCTAATGGGTTACAACCCTAGGGTATATTACCGGGGCCGCGGTGCATTTGAGTCCATGGGAGCAGGGTTGGCAATGTCACCAGTCATCAGTAGGAGGGCTGACAGACACTTTGAAGAAGAAGGGCCCATACTGTGTGCAGCACTCGATGGATTGAAGTTGCCTTCTTTTCCCGAATATGAAGTCAGAGTCAGGTATGCAACAGAACATAGATGTGGAGTGGTGGTAAAAGGACCAAGTTTAAGTGGAAACATATCAGGAACAGACCCGTTGAAGGACAACCGTTTACTTTTGCAAGCTGAAGCTCTAGATGGTAGTGATGAGGCACGACATACAGCTAAAGTTGTTAACGAGTTATCCAAGGAAATGTCAAAGATTCTCATTGCTCATCCACTGAATGCAAAGCGGGCCTCTGAAGGGAAGAACATAGCTAATGTTGTCCTTTTACGAGGCTGTGGTATCCGGATTGAGGTTTCTCCATTTGCAAAGAAACATGGGTTATGGCCTTGTATGGTAGCTCCAACAAAAATCATTGCTGGATTGGGCTTATCTCTTGGCATTGATATCCTGGAAGCTCCTGGAGCAACTGGAGACTGCAGAACACTTCTAACTTCCAAAACAACTACAATAGCCAAGGCACTCTCAGCTCCTCTGCAGTCTTGCCCCAATGTGTTTGTGCCAGGGGAAGATGAACACAAACCAGGCCGATCAGATGGCTATGATTTTGGGTTCCTCCACATAAAGAGAGCAACAGTAGGTGAGAGTATGATTTGGGTGGGTTTGGGAGTGTTGAGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

335

Amino Acids

35.91

Weight (kDa)

8.12

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	10 - 266	1.4e-08	Metalloenzyme superfamily
PhosphMutase	PF10143	45 - 97	1.6e-16	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
PhosphMutase	PF10143	98 - 202	1.1e-16	2,3-bisphosphoglycerate-independent phosphoglycerate mutase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019413)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0065241
rosa_laevigata	RLG00000035770
rosa_multiflora	Rmu_sc0005450.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016070
rosa_rugosa	Rorug05G0369700
rosa_samantha	Rh5AG428000 Rh5CG465700
rosa_wichuraiana	Rw5G040170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	249
AccIII	TCCGGA	1 cut(s)	669
AciI	CCGC	3 cut(s)	247, 249, 613
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	118
AcuI	CTGAAG	3 cut(s)	83, 528, 642
AfiI	CCNNNNNNNGG	4 cut(s)	80, 481, 624, 676
AgsI	TTSAA	4 cut(s)	170, 323, 364, 481
AjnI	CCWGG	4 cut(s)	774, 784, 886, 907
AluBI	AGCT	7 cut(s)	506, 512, 545, 638, 725, 782, 854
AluI	AGCT	7 cut(s)	506, 512, 545, 638, 725, 782, 854
Alw26I	GTCTC	1 cut(s)	792
Aor13HI	TCCGGA	1 cut(s)	669
AoxI	GGCC	6 cut(s)	105, 244, 332, 615, 710, 910
ApaI	GGGCCC	1 cut(s)	336
ApeKI	GCWGC	2 cut(s)	16, 347
ApoI	RAATTY	1 cut(s)	118
ArsI	GACNNNNNNTTYG	4 cut(s)	302, 334, 375, 407
AspA2I	CCTAGG	1 cut(s)	227
AspS9I	GGNCC	6 cut(s)	160, 244, 332, 333, 440, 615
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	279, 977
AvaII	GGWCC	2 cut(s)	160, 440
AvrII	CCTAGG	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	336
BalI	TGGCCA	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	336
BarI	GAAGNNNNNNTAC	2 cut(s)	321, 353
BbvI	GCAGC	2 cut(s)	28, 359
BccI	CCATC	7 cut(s)	44, 134, 151, 210, 350, 512, 914
BciT130I	CCWGG	4 cut(s)	776, 786, 888, 909
BciVI	GTATCC	1 cut(s)	677
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	2 cut(s)	228, 515
BfmI	CTRYAG	2 cut(s)	802, 860
BfuI	GTATCC	1 cut(s)	677
BisI	GCNGC	3 cut(s)	17, 247, 348
BlnI	CCTAGG	1 cut(s)	227
BlsI	GCNGC	3 cut(s)	18, 248, 349
Bme1390I	CCNGG	5 cut(s)	242, 776, 786, 888, 909
Bme18I	GGWCC	2 cut(s)	160, 440
BmgT120I	GGNCC	6 cut(s)	160, 244, 332, 333, 440, 615
BmiI	GGNNCC	4 cut(s)	162, 245, 334, 938
BmrFI	CCNGG	5 cut(s)	242, 776, 786, 888, 909
BmsI	GCATC	2 cut(s)	16, 115
BpmI	CTGGAG	2 cut(s)	807, 816
BpuMI	CCSGG	1 cut(s)	242
BsaJI	CCNNGG	7 cut(s)	227, 241, 247, 264, 567, 840, 887
BsaWI	WCCGGW	1 cut(s)	669
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 481, 624, 676
Bse1I	ACTGG	2 cut(s)	290, 799
Bse3DI	GCAATG	3 cut(s)	288, 588, 738
BseAI	TCCGGA	1 cut(s)	669
BseBI	CCWGG	4 cut(s)	776, 786, 888, 909
BseDI	CCNNGG	7 cut(s)	227, 241, 247, 264, 567, 840, 887
BseGI	GGATG	4 cut(s)	7, 130, 197, 595
BseLI	CCNNNNNNNGG	4 cut(s)	80, 481, 624, 676
BseMI	GCAATG	3 cut(s)	288, 588, 738
BseMII	CTCAG	1 cut(s)	864
BseNI	ACTGG	2 cut(s)	290, 799
BseRI	GAGGAG	2 cut(s)	84, 846
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	28, 359
BseYI	CCCAGC	1 cut(s)	12
BsgI	GTGCAG	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	6 cut(s)	107, 246, 334, 617, 712, 912
BsiSI	CCGG	2 cut(s)	241, 670
BslI	CCNNNNNNNGG	4 cut(s)	80, 481, 624, 676
BsmAI	GTCTC	1 cut(s)	792
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	6 cut(s)	107, 246, 334, 617, 712, 912
Bsp120I	GGGCCC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp13I	TCCGGA	1 cut(s)	669
Bsp143I	GATC	1 cut(s)	914
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	3 cut(s)	247, 249, 613
BspANI	GGCC	6 cut(s)	107, 246, 334, 617, 712, 912
BspCNI	CTCAG	1 cut(s)	863
BspEI	TCCGGA	1 cut(s)	669
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	4 cut(s)	162, 245, 334, 938
BspMAI	CTGCAG	2 cut(s)	806, 864
BsrDI	GCAATG	3 cut(s)	288, 588, 738
BsrI	ACTGG	2 cut(s)	290, 799
BssECI	CCNNGG	7 cut(s)	227, 241, 247, 264, 567, 840, 887
BssMI	GATC	1 cut(s)	914
BssT1I	CCWWGG	4 cut(s)	227, 264, 567, 840
Bst2UI	CCWGG	4 cut(s)	776, 786, 888, 909
Bst4CI	ACNGT	3 cut(s)	342, 491, 961
Bst6I	CTCTTC	2 cut(s)	22, 102
BstC8I	GCNNGC	2 cut(s)	504, 615
BstDEI	CTNAG	1 cut(s)	850
BstDSI	CCRYGG	2 cut(s)	247, 264
BstF5I	GGATG	4 cut(s)	7, 130, 197, 595
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	1 cut(s)	917
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	1 cut(s)	914
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 278, 614, 788, 851
BstNI	CCWGG	4 cut(s)	776, 786, 888, 909
BstSCI	CCNGG	5 cut(s)	240, 774, 784, 886, 907
BstSFI	CTRYAG	2 cut(s)	802, 860
BstSLI	GKGCMC	1 cut(s)	336
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	28, 359
BsuI	GTATCC	1 cut(s)	677
BsuRI	GGCC	6 cut(s)	107, 246, 334, 617, 712, 912
BtgI	CCRYGG	2 cut(s)	247, 264
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	4 cut(s)	7, 130, 197, 595
BtsIMutI	CAGTG	1 cut(s)	599
Cac8I	GCNNGC	2 cut(s)	504, 615
Cfr13I	GGNCC	6 cut(s)	160, 244, 332, 333, 440, 615
Cfr42I	CCGCGG	1 cut(s)	250
CseI	GACGC	1 cut(s)	123
CviAII	CATG	2 cut(s)	265, 701
DdeI	CTNAG	1 cut(s)	850
DpnI	GATC	1 cut(s)	916
DpnII	GATC	1 cut(s)	914
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	2 cut(s)	22, 102
EarI	CTCTTC	2 cut(s)	22, 102
Eco130I	CCWWGG	4 cut(s)	227, 264, 567, 840
Eco24I	GRGCYC	1 cut(s)	336
Eco32I	GATATC	1 cut(s)	772
Eco47I	GGWCC	2 cut(s)	160, 440
Eco57I	CTGAAG	3 cut(s)	83, 528, 642
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	4 cut(s)	774, 784, 886, 907
EcoRV	GATATC	1 cut(s)	772
EcoT14I	CCWWGG	4 cut(s)	227, 264, 567, 840
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	4 cut(s)	227, 264, 567, 840
FaeI	CATG	2 cut(s)	268, 704
FatI	CATG	2 cut(s)	264, 700
FauI	CCCGC	1 cut(s)	606
Fnu4HI	GCNGC	3 cut(s)	17, 247, 348
FokI	GGATG	3 cut(s)	137, 184, 582
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	3 cut(s)	17, 247, 348
FspBI	CTAG	2 cut(s)	228, 515
GluI	GCNGC	3 cut(s)	17, 247, 348
GsaI	CCCAGC	1 cut(s)	16
GsuI	CTGGAG	2 cut(s)	807, 816
HaeIII	GGCC	6 cut(s)	107, 246, 334, 617, 712, 912
HapII	CCGG	2 cut(s)	241, 670
HgaI	GACGC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	268, 704
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	4 cut(s)	91, 260, 396, 583
HpaI	GTTAAC	1 cut(s)	556
HpaII	CCGG	2 cut(s)	241, 670
HphI	GGTGA	2 cut(s)	279, 977
Hpy166II	GTNNAC	2 cut(s)	494, 556
Hpy188I	TCNGA	5 cut(s)	139, 156, 395, 622, 919
Hpy188III	TCNNGA	4 cut(s)	380, 465, 515, 670
Hpy8I	GTNNAC	2 cut(s)	494, 556
HpyAV	CCTTC	4 cut(s)	323, 381, 475, 617
HpyCH4III	ACNGT	3 cut(s)	342, 491, 961
HpyCH4V	TGCA	8 cut(s)	254, 347, 407, 502, 608, 692, 804, 862
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 278, 614, 788, 851
HpyF3I	CTNAG	1 cut(s)	850
Hsp92II	CATG	2 cut(s)	268, 704
Kpn2I	TCCGGA	1 cut(s)	669
KspAI	GTTAAC	1 cut(s)	556
KspI	CCGCGG	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	914
LmnI	GCTCC	6 cut(s)	4, 269, 730, 787, 788, 859
Lsp1109I	GCAGC	2 cut(s)	28, 359
LweI	GCATC	2 cut(s)	16, 115
MaeI	CTAG	2 cut(s)	228, 515
MaeIII	GTNAC	3 cut(s)	191, 218, 285
MalI	GATC	1 cut(s)	916
MboI	GATC	1 cut(s)	914
MboII	GAAGA	6 cut(s)	39, 89, 335, 338, 640, 905
MhlI	GDGCHC	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	1 cut(s)	118
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	3 cut(s)	85, 269, 405
MmeI	TCCRAC	1 cut(s)	752
MnlI	CCTC	8 cut(s)	105, 297, 523, 628, 650, 670, 867, 950
Mox20I	TGGCCA	1 cut(s)	107
MroI	TCCGGA	1 cut(s)	669
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	4 cut(s)	87, 147, 449, 555
MslI	CAYNNNNRTG	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	2 cut(s)	241, 670
MspR9I	CCNGG	5 cut(s)	242, 776, 786, 888, 909
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	4 cut(s)	776, 786, 888, 909
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	5 cut(s)	13, 278, 614, 788, 851
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	1 cut(s)	914
NlaIII	CATG	2 cut(s)	268, 704
NlaIV	GGNNCC	4 cut(s)	162, 245, 334, 938
NmuCI	GTSAC	2 cut(s)	191, 285
PctI	GAATGC	1 cut(s)	610
PfeI	GAWTC	1 cut(s)	583
PfoI	TCCNGGA	2 cut(s)	774, 784
PkrI	GCNGC	3 cut(s)	18, 248, 349
PleI	GAGTC	3 cut(s)	85, 268, 404
PpsI	GAGTC	3 cut(s)	85, 268, 404
Psp6I	CCWGG	4 cut(s)	774, 784, 886, 907
PspFI	CCCAGC	1 cut(s)	12
PspGI	CCWGG	4 cut(s)	774, 784, 886, 907
PspN4I	GGNNCC	4 cut(s)	162, 245, 334, 938
PspOMI	GGGCCC	1 cut(s)	332
PspPI	GGNCC	6 cut(s)	160, 244, 332, 333, 440, 615
PstI	CTGCAG	2 cut(s)	806, 864
RseI	CAYNNNNRTG	1 cut(s)	420
SacII	CCGCGG	1 cut(s)	250
SaqAI	TTAA	4 cut(s)	87, 147, 449, 555
SatI	GCNGC	3 cut(s)	17, 247, 348
Sau3AI	GATC	1 cut(s)	914
Sau96I	GGNCC	6 cut(s)	160, 244, 332, 333, 440, 615
SchI	GAGTC	3 cut(s)	85, 269, 405
ScrFI	CCNGG	5 cut(s)	242, 776, 786, 888, 909
SduI	GDGCHC	1 cut(s)	336
SfaNI	GCATC	2 cut(s)	16, 115
SfcI	CTRYAG	2 cut(s)	802, 860
Sfr303I	CCGCGG	1 cut(s)	250
SgrBI	CCGCGG	1 cut(s)	250
SinI	GGWCC	2 cut(s)	160, 440
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	3 cut(s)	247, 249, 613
SspMI	CTAG	2 cut(s)	228, 515
StyD4I	CCNGG	5 cut(s)	240, 774, 784, 886, 907
StyI	CCWWGG	4 cut(s)	227, 264, 567, 840
TaaI	ACNGT	3 cut(s)	342, 491, 961
TaqI	TCGA	1 cut(s)	354
TasI	AATT	1 cut(s)	118
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	4 cut(s)	87, 147, 449, 555
Tru9I	TTAA	4 cut(s)	87, 147, 449, 555
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	2 cut(s)	191, 285
TseI	GCWGC	2 cut(s)	16, 347
Tsp45I	GTSAC	2 cut(s)	191, 285
TspDTI	ATGAA	2 cut(s)	402, 912
TspRI	CASTG	1 cut(s)	606
VpaK11BI	GGWCC	2 cut(s)	160, 440
XapI	RAATTY	1 cut(s)	118
XbaI	TCTAGA	1 cut(s)	514
XmaJI	CCTAGG	1 cut(s)	227
XspI	CTAG	2 cut(s)	228, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.