Rw5G040170

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0019413
Physical Location & Seq
Forward (+)
70906700 .. 70910366
3667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G040170.1

Sequence Viewer

Length: 756 bp
ATGGACTGGCAATTGCAGACAGAAAAGAATGAATTGTTTAGAACAATCATTGAATTGGAAAAGCAGCTTGACGTCAAAAGTACATTGGTGCTAGAGATTGAGCGTATAAGAGGTGCTTTATTGTTAATCAAACAAATGCATGAAGATGGGGATTTGCAAGAGCGAAATAAGATGAATAAGTTTCAGGAACTGTTAAAGAAGAAGGAAGAGGACTTGACCATGGTAGAACTTATTGTCAAGGAGTGGATAAGTAATGATGAAATTCAGGAAGCTCAGAAGGAGTTGATCATTGGACTGTGGGATTCATCAAACCAGGCATTTATTCATGTGGAGAGAGTGGGAGTTGACATCAATCCATTTCAGACTGCAACCAGCAGAAATTTTTTCGAAGAAGCAAATATTGAATTGTTGGAGTTGTGGTCTTTATGGGCCGAGTATACTAGGGACGAGAGCTGGCACCCATTCAAGGTTATTGTGGATAAAGTAGGAAATGCAAAGGAAATTATTGATGAGAAGGATGCCACATTGAAATTTATAATGAACGAGTTTGATGAAGAATTTTACAAGTTTGTCACAACTGCCTTGGTCAAAGTGAACGAGAATGAGAACAAGAATGATCCCAGTTATAATCATATAAGACCCGTGATGTGGAACTGTAAGACAGGGAGGAGGGCTACAGTTAGAGATGTATATTTGAAAGCGGTGGATTGGTGGAACAAAGCAAAAAGTGAGAAGAATATGGTAAATTTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XH

Protein Analysis

251

Amino Acids

29.83

Weight (kDa)

5.0

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 115 - 242 1.1e-24 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019413)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0065241
rosa_laevigata RLG00000035770
rosa_multiflora Rmu_sc0005450.1_g000001
rosa_roxburghii Rroxscaffold_1G00016070
rosa_rugosa Rorug05G0369700
rosa_samantha Rh5AG428000 Rh5CG465700
rosa_wichuraiana Rw5G040170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 536, 627
AatII GACGTC 1 cut(s) 75
AccB1I GGYRCC 1 cut(s) 456
AccI GTMKAC 1 cut(s) 437
AciI CCGC 1 cut(s) 701
AclWI GGATC 1 cut(s) 611
AcsI RAATTY 5 cut(s) 261, 379, 530, 557, 745
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 1 cut(s) 82
AfiI CCNNNNNNNGG 2 cut(s) 466, 648
AgsI TTSAA 5 cut(s) 53, 404, 466, 529, 697
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 3 cut(s) 67, 272, 453
AluI AGCT 3 cut(s) 67, 272, 453
AlwI GGATC 1 cut(s) 611
AlwNI CAGNNNCTG 1 cut(s) 190
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 5 cut(s) 261, 379, 530, 557, 745
AspS9I GGNCC 1 cut(s) 429
AsuII TTCGAA 1 cut(s) 387
BanI GGYRCC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 314
BclI TGATCA 1 cut(s) 285
BfaI CTAG 2 cut(s) 92, 441
BfmI CTRYAG 1 cut(s) 675
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 458
BmrFI CCNGG 1 cut(s) 314
BmrI ACTGGG 1 cut(s) 615
BmsI GCATC 1 cut(s) 508
BmuI ACTGGG 1 cut(s) 615
Bpu14I TTCGAA 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 219, 582
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 466, 648
Bse1I ACTGG 2 cut(s) 11, 621
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 219, 582
BseGI GGATG 1 cut(s) 523
BseLI CCNNNNNNNGG 2 cut(s) 466, 648
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 2 cut(s) 11, 621
BseRI GAGGAG 1 cut(s) 682
BseXI GCAGC 1 cut(s) 76
BshFI GGCC 1 cut(s) 431
BshNI GGYRCC 1 cut(s) 456
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 466, 648
BsmFI GGGAC 1 cut(s) 458
BsnI GGCC 1 cut(s) 431
Bsp119I TTCGAA 1 cut(s) 387
Bsp143I GATC 2 cut(s) 285, 616
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 1 cut(s) 701
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 458
BspPI GGATC 1 cut(s) 611
BspT104I TTCGAA 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 456
BsrI ACTGG 2 cut(s) 11, 621
BssECI CCNNGG 2 cut(s) 219, 582
BssMI GATC 2 cut(s) 285, 616
BssNAI GTATAC 1 cut(s) 438
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 2 cut(s) 219, 582
Bst1107I GTATAC 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 4 cut(s) 192, 297, 656, 679
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 72
BstBI TTCGAA 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 455
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 523
BstKTI GATC 2 cut(s) 288, 619
BstMBI GATC 2 cut(s) 285, 616
BstNI CCWGG 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 312
BstSFI CTRYAG 1 cut(s) 675
BstV1I GCAGC 1 cut(s) 76
BstZ17I GTATAC 1 cut(s) 438
BsuRI GGCC 1 cut(s) 431
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 523
Cac8I GCNNGC 1 cut(s) 455
CaiI CAGNNNCTG 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 429
Csp6I GTAC 1 cut(s) 81
CviAII CATG 3 cut(s) 140, 220, 326
CviJI RGCY 5 cut(s) 67, 272, 431, 453, 674
CviKI_1 RGCY 5 cut(s) 67, 272, 431, 453, 674
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 1 cut(s) 273
DpnI GATC 2 cut(s) 287, 618
DpnII GATC 2 cut(s) 285, 616
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 2 cut(s) 219, 582
EcoRII CCWGG 1 cut(s) 312
EcoT14I CCWWGG 2 cut(s) 219, 582
EcoT22I ATGCAT 1 cut(s) 141
ErhI CCWWGG 2 cut(s) 219, 582
FaeI CATG 3 cut(s) 143, 223, 329
FalI AAGNNNNNCTT 2 cut(s) 100, 132
FaqI GGGAC 1 cut(s) 458
FatI CATG 3 cut(s) 139, 219, 325
FbaI TGATCA 1 cut(s) 285
FblI GTMKAC 1 cut(s) 437
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 1 cut(s) 530
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 2 cut(s) 92, 441
GluI GCNGC 1 cut(s) 65
HaeIII GGCC 1 cut(s) 431
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 3 cut(s) 143, 223, 329
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 1 cut(s) 302
Hpy166II GTNNAC 3 cut(s) 346, 438, 595
Hpy188I TCNGA 2 cut(s) 276, 363
Hpy188III TCNNGA 3 cut(s) 185, 266, 753
Hpy8I GTNNAC 3 cut(s) 346, 438, 595
HpyAV CCTTC 3 cut(s) 196, 271, 508
HpyCH4III ACNGT 4 cut(s) 192, 297, 656, 679
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 5 cut(s) 16, 139, 157, 368, 494
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 3 cut(s) 143, 223, 329
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 2 cut(s) 285, 616
LpnPI CCDG 8 cut(s) 170, 251, 299, 326, 385, 439, 634, 648
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 508
MaeI CTAG 2 cut(s) 92, 441
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 571
MalI GATC 2 cut(s) 287, 618
MboI GATC 2 cut(s) 285, 616
MboII GAAGA 6 cut(s) 155, 211, 218, 401, 566, 745
MfeI CAATTG 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 4 cut(s) 104, 202, 660, 663
Mph1103I ATGCAT 1 cut(s) 141
MseI TTAA 2 cut(s) 125, 194
MslI CAYNNNNRTG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 314
MunI CAATTG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 314
NcoI CCATGG 1 cut(s) 219
NdeII GATC 2 cut(s) 285, 616
NlaIII CATG 3 cut(s) 143, 223, 329
NlaIV GGNNCC 1 cut(s) 458
NmeAIII GCCGAG 1 cut(s) 457
NmuCI GTSAC 1 cut(s) 571
NsiI ATGCAT 1 cut(s) 141
NspV TTCGAA 1 cut(s) 387
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 66
PsiI TTATAA 2 cut(s) 536, 627
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 1 cut(s) 458
PspPI GGNCC 1 cut(s) 429
PstNI CAGNNNCTG 1 cut(s) 190
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 2 cut(s) 125, 194
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 2 cut(s) 285, 616
Sau96I GGNCC 1 cut(s) 429
ScrFI CCNGG 1 cut(s) 314
SetI ASST 6 cut(s) 69, 75, 115, 274, 455, 471
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 1 cut(s) 675
SfuI TTCGAA 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 144
SsiI CCGC 1 cut(s) 701
SspI AATATT 1 cut(s) 400
SspMI CTAG 2 cut(s) 92, 441
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 2 cut(s) 219, 582
TaaI ACNGT 4 cut(s) 192, 297, 656, 679
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 387
TatI WGTACW 1 cut(s) 80
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 2 cut(s) 125, 194
Tru9I TTAA 2 cut(s) 125, 194
TseFI GTSAC 1 cut(s) 571
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 571
TspDTI ATGAA 8 cut(s) 45, 156, 188, 273, 294, 314, 554, 567
XapI RAATTY 5 cut(s) 261, 379, 530, 557, 745
XmiI GTMKAC 1 cut(s) 437
XspI CTAG 2 cut(s) 92, 441
ZraI GACGTC 1 cut(s) 73
Zsp2I ATGCAT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.