Rh5AG428000

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019413
Physical Location & Seq
Forward (+)
73648567 .. 73652803
4237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG428000.1

Sequence Viewer

Length: 1005 bp
ATGCTGCAAACCAATGCACGTGGCTACCTTGAAAAGGCATTGTCGGAGCAGGAAAAGGCATTCCTAGAGCAGGATGAAGCCTTGTTAAGATCCGAAGCTCAGAAGAAAGATTTGAAGAAACAGCTTGAGGAGAGTGAAGCTCAGAACAAAGTGCTTAAGAAACAGCTTGAGCAGAATGTTGCTCAGAATAAAGTGCTTGCAGAGCGTGAGAAGCAACTACAACGATGGAATAACAGCATTATGTTGGAGAAGAAGAAGGCAGATGAAAAGGTGTTACTGCTTTCAGAAGAACATAAGAGAGAAAAGAATGAATTGTTTAGAACAATCATTGAATTGGAAAAGCAGCTTGACGTCAAAAGTACATTGGCGCTAGAGATTGAGCGTATAAGAGGTGCTTTATTGTTAATCAAACAAATGCATGAAGATGGGGATTTGCAAGGGCGAAATAAGATGAATATGTTTCAGGAACTGTTAAAGAAGAAGGAAGAGGACTTGACCATGGTAGAACTTATTGTCAAGGAGTGGATAAGTAATGAAGAAATTCAGGAAGCTCAGAAGGAGTTGATCATTGGACTGTGGGATTCATCAAACCAGGCATTTATTCATGTGGCGAGAGTGGGAGTTGACATCAATCCATTTCAGACTACAACCAGCAGAAATTTTTTCGAAGAAGCAAATATTGAATTGTTGGAGTTGTGGTCTTTATGGGCCGAGTATACTAGGGACGAGAGCTGGCACCCATTCAAGGTTATTGTGGATAAAGTAGGAAATGCAAAGGAAATTATTGATGAGGAGGATGCCACATTGAAATTTATAATGAACGAGTTTGATGAAGAATTTTACAAGTTTGTCACAACTGCCTTGGTCAAAGTGAACGAGAATGAGAACAAGAATGATCCGAGTTATAATCATATAAGACCCGTGATGTGGAACTGTAAGACAGGGAGGAGGGCTACAGTTAGAGATGTATATTTGAAAGCGGTGGATTGGTGGAACAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XH

Protein Analysis

334

Amino Acids

39.47

Weight (kDa)

5.28

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 208 - 331 5.8e-24 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019413)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0065241
rosa_laevigata RLG00000035770
rosa_multiflora Rmu_sc0005450.1_g000001
rosa_roxburghii Rroxscaffold_1G00016070
rosa_rugosa Rorug05G0369700
rosa_samantha Rh5AG428000 Rh5CG465700
rosa_wichuraiana Rw5G040170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 815, 906
AatII GACGTC 1 cut(s) 354
AccB1I GGYRCC 1 cut(s) 735
AccI GTMKAC 1 cut(s) 716
AciI CCGC 1 cut(s) 980
AclWI GGATC 2 cut(s) 84, 890
AcsI RAATTY 4 cut(s) 540, 658, 809, 836
AcvI CACGTG 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 4 cut(s) 34, 70, 745, 927
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 7 cut(s) 32, 115, 332, 683, 745, 808, 976
AjnI CCWGG 1 cut(s) 591
AluBI AGCT 7 cut(s) 98, 124, 140, 166, 346, 551, 732
AluI AGCT 7 cut(s) 98, 124, 140, 166, 346, 551, 732
AlwI GGATC 2 cut(s) 84, 890
AlwNI CAGNNNCTG 1 cut(s) 469
AoxI GGCC 1 cut(s) 708
ApeKI GCWGC 2 cut(s) 4, 343
ApoI RAATTY 4 cut(s) 540, 658, 809, 836
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 708
AsuII TTCGAA 1 cut(s) 666
BanI GGYRCC 1 cut(s) 735
BbrPI CACGTG 1 cut(s) 20
BbvI GCAGC 1 cut(s) 355
BccI CCATC 2 cut(s) 219, 419
BciT130I CCWGG 1 cut(s) 593
BclI TGATCA 1 cut(s) 564
BfaI CTAG 3 cut(s) 65, 371, 720
BfmI CTRYAG 1 cut(s) 954
BfoI RGCGCY 1 cut(s) 371
BfrI CTTAAG 1 cut(s) 155
BisI GCNGC 2 cut(s) 5, 344
BlsI GCNGC 2 cut(s) 6, 345
Bme1390I CCNGG 1 cut(s) 593
BmgT120I GGNCC 1 cut(s) 708
BmiI GGNNCC 1 cut(s) 737
BmrFI CCNGG 1 cut(s) 593
BmsI GCATC 1 cut(s) 787
BplI GAGNNNNNCTC 2 cut(s) 124, 156
Bpu14I TTCGAA 1 cut(s) 666
BpuEI CTTGAG 2 cut(s) 146, 188
BsaAI YACGTR 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 2 cut(s) 498, 861
BsaXI ACNNNNNCTCC 2 cut(s) 683, 713
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 70, 745, 927
BseBI CCWGG 1 cut(s) 593
BseDI CCNNGG 2 cut(s) 498, 861
BseGI GGATG 2 cut(s) 79, 802
BseLI CCNNNNNNNGG 4 cut(s) 34, 70, 745, 927
BseMII CTCAG 4 cut(s) 113, 155, 197, 566
BseRI GAGGAG 3 cut(s) 143, 806, 961
BseXI GCAGC 1 cut(s) 355
BshFI GGCC 1 cut(s) 710
BshNI GGYRCC 1 cut(s) 735
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 4 cut(s) 34, 70, 745, 927
BsmFI GGGAC 1 cut(s) 737
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 1 cut(s) 710
Bsp119I TTCGAA 1 cut(s) 666
Bsp143I GATC 3 cut(s) 89, 564, 895
Bsp19I CCATGG 1 cut(s) 498
BspACI CCGC 1 cut(s) 980
BspANI GGCC 1 cut(s) 710
BspCNI CTCAG 4 cut(s) 112, 154, 196, 565
BspLI GGNNCC 1 cut(s) 737
BspPI GGATC 2 cut(s) 84, 890
BspT104I TTCGAA 1 cut(s) 666
BspT107I GGYRCC 1 cut(s) 735
BspTI CTTAAG 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 498, 861
BssMI GATC 3 cut(s) 89, 564, 895
BssNAI GTATAC 1 cut(s) 717
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 2 cut(s) 498, 861
Bst1107I GTATAC 1 cut(s) 717
Bst2UI CCWGG 1 cut(s) 593
Bst4CI ACNGT 4 cut(s) 471, 576, 935, 958
Bst6I CTCTTC 1 cut(s) 480
BstACI GRCGYC 1 cut(s) 351
BstAFI CTTAAG 1 cut(s) 155
BstBAI YACGTR 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 666
BstC8I GCNNGC 2 cut(s) 198, 734
BstDEI CTNAG 4 cut(s) 99, 141, 183, 552
BstDSI CCRYGG 1 cut(s) 498
BstENI CCTNNNNNAGG 2 cut(s) 32, 68
BstF5I GGATG 2 cut(s) 79, 802
BstH2I RGCGCY 1 cut(s) 371
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 3 cut(s) 92, 567, 898
BstMBI GATC 3 cut(s) 89, 564, 895
BstMWI GCNNNNNNNGC 2 cut(s) 202, 211
BstNI CCWGG 1 cut(s) 593
BstSCI CCNGG 1 cut(s) 591
BstSFI CTRYAG 1 cut(s) 954
BstV1I GCAGC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BstZ17I GTATAC 1 cut(s) 717
BsuRI GGCC 1 cut(s) 710
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 2 cut(s) 79, 802
Cac8I GCNNGC 2 cut(s) 198, 734
CaiI CAGNNNCTG 1 cut(s) 469
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 708
Csp6I GTAC 1 cut(s) 360
CspCI CAANNNNNGTGG 1 cut(s) 36
CviAII CATG 3 cut(s) 419, 499, 605
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 4 cut(s) 99, 141, 183, 552
DpnI GATC 3 cut(s) 91, 566, 897
DpnII GATC 3 cut(s) 89, 564, 895
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 498, 861
Eco72I CACGTG 1 cut(s) 20
EcoNI CCTNNNNNAGG 2 cut(s) 32, 68
EcoRII CCWGG 1 cut(s) 591
EcoT14I CCWWGG 2 cut(s) 498, 861
EcoT22I ATGCAT 1 cut(s) 420
ErhI CCWWGG 2 cut(s) 498, 861
FaeI CATG 3 cut(s) 422, 502, 608
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FaqI GGGAC 1 cut(s) 737
FatI CATG 3 cut(s) 418, 498, 604
FbaI TGATCA 1 cut(s) 564
FblI GTMKAC 1 cut(s) 716
Fnu4HI GCNGC 2 cut(s) 5, 344
FokI GGATG 2 cut(s) 86, 809
Fsp4HI GCNGC 2 cut(s) 5, 344
FspBI CTAG 3 cut(s) 65, 371, 720
GlaI GCGC 1 cut(s) 369
GluI GCNGC 2 cut(s) 5, 344
HaeII RGCGCY 1 cut(s) 371
HaeIII GGCC 1 cut(s) 710
HhaI GCGC 1 cut(s) 370
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 3 cut(s) 422, 502, 608
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HinfI GANTC 1 cut(s) 581
Hpy166II GTNNAC 3 cut(s) 625, 717, 874
Hpy188I TCNGA 9 cut(s) 46, 94, 102, 144, 186, 286, 555, 642, 900
Hpy188III TCNNGA 2 cut(s) 464, 545
Hpy8I GTNNAC 3 cut(s) 625, 717, 874
HpyAV CCTTC 3 cut(s) 250, 475, 550
HpyCH4III ACNGT 4 cut(s) 471, 576, 935, 958
HpyCH4IV ACGT 2 cut(s) 19, 351
HpyCH4V TGCA 6 cut(s) 7, 17, 200, 418, 436, 773
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 211
HpyF3I CTNAG 4 cut(s) 99, 141, 183, 552
HpySE526I ACGT 2 cut(s) 19, 351
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 3 cut(s) 422, 502, 608
HspAI GCGC 1 cut(s) 368
Ksp22I TGATCA 1 cut(s) 564
Kzo9I GATC 3 cut(s) 89, 564, 895
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 9 cut(s) 35, 56, 449, 530, 578, 605, 664, 718, 927
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 1 cut(s) 787
MaeI CTAG 3 cut(s) 65, 371, 720
MaeII ACGT 2 cut(s) 19, 351
MaeIII GTNAC 2 cut(s) 273, 850
MalI GATC 3 cut(s) 91, 566, 897
MboI GATC 3 cut(s) 89, 564, 895
MflI RGATCY 1 cut(s) 89
MluCI AATT 8 cut(s) 311, 332, 540, 658, 683, 780, 809, 836
MmeI TCCRAC 3 cut(s) 24, 225, 669
MnlI CCTC 7 cut(s) 121, 383, 481, 784, 787, 939, 942
Mph1103I ATGCAT 1 cut(s) 420
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 4 cut(s) 86, 156, 404, 473
MslI CAYNNNNRTG 1 cut(s) 423
MspCI CTTAAG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 593
Mva1269I GAATGC 1 cut(s) 59
MvaI CCWGG 1 cut(s) 593
MwoI GCNNNNNNNGC 2 cut(s) 202, 211
NcoI CCATGG 1 cut(s) 498
NdeII GATC 3 cut(s) 89, 564, 895
NlaIII CATG 3 cut(s) 422, 502, 608
NlaIV GGNNCC 1 cut(s) 737
NmeAIII GCCGAG 1 cut(s) 736
NmuCI GTSAC 1 cut(s) 850
NsiI ATGCAT 1 cut(s) 420
NspV TTCGAA 1 cut(s) 666
PctI GAATGC 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 1 cut(s) 581
PkrI GCNGC 2 cut(s) 6, 345
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
Ppu21I YACGTR 1 cut(s) 20
PsiI TTATAA 2 cut(s) 815, 906
Psp6I CCWGG 1 cut(s) 591
PspCI CACGTG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 591
PspN4I GGNNCC 1 cut(s) 737
PspPI GGNCC 1 cut(s) 708
PstNI CAGNNNCTG 1 cut(s) 469
PsuI RGATCY 1 cut(s) 89
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 423
SaqAI TTAA 4 cut(s) 86, 156, 404, 473
SatI GCNGC 2 cut(s) 5, 344
Sau3AI GATC 3 cut(s) 89, 564, 895
Sau96I GGNCC 1 cut(s) 708
ScrFI CCNGG 1 cut(s) 593
SfaNI GCATC 1 cut(s) 787
SfcI CTRYAG 1 cut(s) 954
SfuI TTCGAA 1 cut(s) 666
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 3 cut(s) 125, 155, 167
SmoI CTYRAG 3 cut(s) 125, 155, 167
Sse9I AATT 8 cut(s) 311, 332, 540, 658, 683, 780, 809, 836
SsiI CCGC 1 cut(s) 980
SspI AATATT 1 cut(s) 679
SspMI CTAG 3 cut(s) 65, 371, 720
StyD4I CCNGG 1 cut(s) 591
StyI CCWWGG 2 cut(s) 498, 861
TaaI ACNGT 4 cut(s) 471, 576, 935, 958
TaiI ACGT 2 cut(s) 22, 354
TaqI TCGA 1 cut(s) 666
TasI AATT 8 cut(s) 311, 332, 540, 658, 683, 780, 809, 836
TatI WGTACW 1 cut(s) 359
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 4 cut(s) 86, 156, 404, 473
Tru9I TTAA 4 cut(s) 86, 156, 404, 473
TseFI GTSAC 1 cut(s) 850
TseI GCWGC 2 cut(s) 4, 343
Tsp45I GTSAC 1 cut(s) 850
Vha464I CTTAAG 1 cut(s) 155
XagI CCTNNNNNAGG 2 cut(s) 32, 68
XapI RAATTY 4 cut(s) 540, 658, 809, 836
XmiI GTMKAC 1 cut(s) 716
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 3 cut(s) 65, 371, 720
ZraI GACGTC 1 cut(s) 352
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.