Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016807

Physical Location & Seq

Genomic Coordinates Reverse (-)

71221326 .. 71222572

Gene Structure 1247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCTAAGTTGAAGGAGAGGGGGGTCGAGTCCTTGTCTCCAATTCAGGCCATGACCTTCGATACCATCTTGGATGGGTTCGACTTGATGGGTCAGGCTAGCGCTGGCCAGGATAAAACTCTGGCTTTTGTGTTACCCATCCTGGAGTCTCTAATAAATGGTTCTGCAGAACAATCTAAAAAGACCGGGTACAGGGCTCCAACTGTTATCGTACTTTTACCTACAAGGGACTTGGCCATACAGGATCAAATAGAAAAGGGCAACATAGACTTGAGCAATTTGAAGTTTCGGGTCCTTGGTGAAGCTGATGAAATGTCAAAGAAGGGGTTAGTTGAACATGTTGAATTCATTCTAGGCAAGGAATATGATGTAGCTAAAGTTCAAACGCTTCTCTTCAGTACTACCATGCCCCATTGGGTGGAAGAGGTAAGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

145

Amino Acids

16.01

Weight (kDa)

4.92

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	13 - 81	5.4e-11	DEAD/DEAH box helicase
DEAD	PF00270	87 - 143	4e-06	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36510 FvH4_3g36510
pyrus_communis	pycom01g19970
rosa_chinensis	RchiOBHm_Chr5g0065371 RchiOBHm_Chr5g0065431
rosa_laevigata	RLG00000035787
rosa_multiflora	Rmu_co8502081.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015820
rosa_rugosa	Rorug05G0371800
rosa_samantha	Rh5AG429500 Rh5BG444800 Rh5CG467100 Rh5DG457300
rosa_wichuraiana	Rw5G040320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	418
AclWI	GGATC	1 cut(s)	252
AcoI	YGGCCR	2 cut(s)	106, 234
AcsI	RAATTY	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	379
AfaI	GTAC	3 cut(s)	191, 213, 400
AfeI	AGCGCT	1 cut(s)	103
AfiI	CCNNNNNNNGG	2 cut(s)	192, 418
AflIII	ACRYGT	1 cut(s)	337
AgsI	TTSAA	5 cut(s)	13, 283, 335, 344, 383
AjnI	CCWGG	2 cut(s)	108, 141
AluBI	AGCT	2 cut(s)	305, 374
AluI	AGCT	2 cut(s)	305, 374
Alw26I	GTCTC	2 cut(s)	42, 153
AlwI	GGATC	1 cut(s)	252
Aor51HI	AGCGCT	1 cut(s)	103
AoxI	GGCC	3 cut(s)	48, 106, 234
ApoI	RAATTY	1 cut(s)	344
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	311
AsuNHI	GCTAGC	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	292
BalI	TGGCCA	2 cut(s)	108, 236
BanII	GRGCYC	1 cut(s)	199
BccI	CCATC	4 cut(s)	68, 74, 82, 146
BciT130I	CCWGG	2 cut(s)	110, 143
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	2 cut(s)	42, 153
BfaI	CTAG	2 cut(s)	99, 353
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	105
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	3 cut(s)	110, 143, 187
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	2 cut(s)	198, 293
BmrFI	CCNGG	3 cut(s)	110, 143, 187
BmtI	GCTAGC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	292
BpuMI	CCSGG	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 418
BseBI	CCWGG	2 cut(s)	110, 143
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	2 cut(s)	79, 138
BseLI	CCNNNNNNNGG	2 cut(s)	192, 418
BshFI	GGCC	3 cut(s)	50, 108, 236
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	192, 418
BsmAI	GTCTC	2 cut(s)	42, 153
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	3 cut(s)	50, 108, 236
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	244
BspANI	GGCC	3 cut(s)	50, 108, 236
BspLI	GGNNCC	2 cut(s)	198, 293
BspMAI	CTGCAG	1 cut(s)	169
BspOI	GCTAGC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	2 cut(s)	110, 143
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	2 cut(s)	398, 417
BstC8I	GCNNGC	2 cut(s)	100, 106
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	79, 138
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	2 cut(s)	42, 153
BstMBI	GATC	1 cut(s)	244
BstNI	CCWGG	2 cut(s)	110, 143
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	3 cut(s)	108, 141, 185
BstSFI	CTRYAG	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	50, 108, 236
BtsCI	GGATG	2 cut(s)	79, 138
Cac8I	GCNNGC	2 cut(s)	100, 106
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	3 cut(s)	190, 212, 399
CviAII	CATG	3 cut(s)	52, 338, 406
CviJI	RGCY	9 cut(s)	5, 50, 98, 108, 125, 197, 236, 305, 374
CviKI_1	RGCY	9 cut(s)	5, 50, 98, 108, 125, 197, 236, 305, 374
CviQI	GTAC	3 cut(s)	190, 212, 399
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
EaeI	YGGCCR	2 cut(s)	106, 234
Eam1104I	CTCTTC	2 cut(s)	398, 417
EarI	CTCTTC	2 cut(s)	398, 417
Eco130I	CCWWGG	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	292
Eco47III	AGCGCT	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	108, 141
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	3 cut(s)	55, 341, 409
FaiI	YATR	8 cut(s)	53, 239, 266, 339, 366, 407, 434, 436
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	3 cut(s)	51, 337, 405
FokI	GGATG	2 cut(s)	86, 125
FriOI	GRGCYC	1 cut(s)	199
FspBI	CTAG	2 cut(s)	99, 353
GlaI	GCGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	164
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	50, 108, 236
HapII	CCGG	1 cut(s)	186
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	3 cut(s)	55, 341, 409
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	2 cut(s)	29, 146
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	7, 67, 316
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	3 cut(s)	55, 341, 409
HspAI	GCGC	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	99, 353
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	2 cut(s)	385, 434
MhlI	GDGCHC	1 cut(s)	199
MlsI	TGGCCA	2 cut(s)	108, 236
MluCI	AATT	3 cut(s)	42, 277, 344
MluNI	TGGCCA	2 cut(s)	108, 236
MlyI	GAGTC	2 cut(s)	38, 155
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	2 cut(s)	12, 418
Mox20I	TGGCCA	2 cut(s)	108, 236
MroXI	GAANNNNTTC	1 cut(s)	348
MscI	TGGCCA	2 cut(s)	108, 236
Msp20I	TGGCCA	2 cut(s)	108, 236
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	3 cut(s)	110, 143, 187
MvaI	CCWGG	2 cut(s)	110, 143
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	1 cut(s)	244
NheI	GCTAGC	1 cut(s)	98
NlaIII	CATG	3 cut(s)	55, 341, 409
NlaIV	GGNNCC	2 cut(s)	198, 293
NspI	RCATGY	1 cut(s)	341
PciI	ACATGT	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	348
PflMI	CCANNNNNTGG	1 cut(s)	418
PfoI	TCCNGGA	1 cut(s)	141
PleI	GAGTC	2 cut(s)	37, 154
PpsI	GAGTC	2 cut(s)	37, 154
PpuMI	RGGWCCY	1 cut(s)	292
PscI	ACATGT	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	108, 141
PspGI	CCWGG	2 cut(s)	108, 141
PspN4I	GGNNCC	2 cut(s)	198, 293
PspPI	GGNCC	1 cut(s)	292
PspPPI	RGGWCCY	1 cut(s)	292
PsrI	GAACNNNNNNTAC	2 cut(s)	363, 395
PstI	CTGCAG	1 cut(s)	169
RsaI	GTAC	3 cut(s)	191, 213, 400
RsaNI	GTAC	3 cut(s)	190, 212, 399
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	292
ScaI	AGTACT	1 cut(s)	400
SchI	GAGTC	2 cut(s)	38, 155
ScrFI	CCNGG	3 cut(s)	110, 143, 187
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	5 cut(s)	59, 223, 307, 376, 429
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	3 cut(s)	42, 277, 344
SspMI	CTAG	2 cut(s)	99, 353
StyD4I	CCNGG	3 cut(s)	108, 141, 185
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	3 cut(s)	27, 60, 81
TasI	AATT	3 cut(s)	42, 277, 344
TatI	WGTACW	1 cut(s)	398
TspDTI	ATGAA	2 cut(s)	324, 337
Van91I	CCANNNNNTGG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	344
XceI	RCATGY	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	2 cut(s)	99, 353
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.