RchiOBHm_Chr5g0066671

Shikimate O-hydroxycinnamoyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0019015
Physical Location & Seq
Forward (+)
72751408 .. 72751809
402 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGGCCCGCCGCCTGAAGCGAAAAATTGATGAGGCCGAGAAGTGTCGTCTTGAAATAGATTGCAATGCGGAGGGGGCCTTGTTTGTTATGGCCCATAGCAGCTCTTGCATCAATGACTTCGGGGATTTCGCACCCACTCCCGACTTCAGGAGAGGGCTCCTCCCTACCGTTGATTGTTCCGGCTGGATATCTTCTTATCCTCTGTTGCTGGTAACAATCACATATTTAAAATGTGGTGGAGTGGCACTTGGTGTTCGCATAGACCATCACTTAGCAGATGGATTATCTGCTCTTCACTTTATAAATAAATGGTCTGGTATGGCTCGTGGTCTGGACCTTGCAATCCCACCAACGATCACTACAACAAAATTGGGTATTAATGACCACTGCATTGGTCACTGA

Protein Analysis

133

Amino Acids

14.54

Weight (kDa)

6.99

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 12 - 124 2.9e-29 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019015)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0066671
rosa_multiflora Rmu_sc0000605.1_g000046 Rmu_sc0013613.1_g000001
rosa_roxburghii Rroxscaffold_1G00014510
rosa_samantha Rh5BG454300 Rh5BG455200 Rh5CG476600 Rh5CG477300 Rh5DG468900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
AciI CCGC 3 cut(s) 7, 10, 68
AcuI CTGAAG 2 cut(s) 35, 130
AdeI CACNNNGTG 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 1 cut(s) 53
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
AoxI GGCC 4 cut(s) 3, 33, 75, 90
ApeKI GCWGC 1 cut(s) 99
AseI ATTAAT 1 cut(s) 378
AspS9I GGNCC 4 cut(s) 4, 75, 91, 334
AvaII GGWCC 1 cut(s) 334
BanII GRGCYC 1 cut(s) 159
BauI CACGAG 1 cut(s) 324
BbvI GCAGC 1 cut(s) 111
BccI CCATC 2 cut(s) 272, 273
BisI GCNGC 2 cut(s) 10, 100
BlsI GCNGC 2 cut(s) 11, 101
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 4 cut(s) 4, 75, 91, 334
BmiI GGNNCC 2 cut(s) 76, 158
BmsI GCATC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 144, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 111
BshFI GGCC 4 cut(s) 5, 35, 77, 92
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 147
BsnI GGCC 4 cut(s) 5, 35, 77, 92
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 354
BspACI CCGC 3 cut(s) 7, 10, 68
BspANI GGCC 4 cut(s) 5, 35, 77, 92
BspLI GGNNCC 2 cut(s) 76, 158
BspQI GCTCTTC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 70
BssMI GATC 1 cut(s) 354
BssSI CACGAG 1 cut(s) 324
Bst2BI CACGAG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 297
BstAPI GCANNNNNTGC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 271
BstKTI GATC 1 cut(s) 357
BstMBI GATC 1 cut(s) 354
BstMWI GCNNNNNNNGC 2 cut(s) 74, 105
BstV1I GCAGC 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 392
BsuRI GGCC 4 cut(s) 5, 35, 77, 92
BtsI GCAGTG 1 cut(s) 385
BtsIMutI CAGTG 2 cut(s) 385, 397
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 4 cut(s) 4, 75, 91, 334
CviJI RGCY 8 cut(s) 5, 35, 77, 92, 102, 157, 183, 323
CviKI_1 RGCY 8 cut(s) 5, 35, 77, 92, 102, 157, 183, 323
DdeI CTNAG 1 cut(s) 271
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
DraI TTTAAA 1 cut(s) 228
DraIII CACNNNGTG 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 159
Eco32I GATATC 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 334
Eco57I CTGAAG 2 cut(s) 35, 130
EcoO109I RGGNCCY 1 cut(s) 75
EcoRV GATATC 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 159
FaiI YATR 6 cut(s) 89, 96, 223, 260, 302, 320
FauI CCCGC 1 cut(s) 14
Fnu4HI GCNGC 2 cut(s) 10, 100
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 10, 100
GluI GCNGC 2 cut(s) 10, 100
HaeIII GGCC 4 cut(s) 5, 35, 77, 92
HapII CCGG 1 cut(s) 180
HpaII CCGG 1 cut(s) 180
Hpy188III TCNNGA 4 cut(s) 50, 140, 148, 332
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 63, 108, 341, 390
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 105
HpyF3I CTNAG 1 cut(s) 271
Kzo9I GATC 1 cut(s) 354
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 7 cut(s) 26, 133, 169, 193, 194, 300, 317
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 211, 395
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 2 cut(s) 183, 284
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 2 cut(s) 24, 368
MnlI CCTC 5 cut(s) 25, 64, 146, 170, 210
MseI TTAA 2 cut(s) 227, 378
MspI CCGG 1 cut(s) 180
MwoI GCNNNNNNNGC 2 cut(s) 74, 105
NdeII GATC 1 cut(s) 354
NlaIV GGNNCC 2 cut(s) 76, 158
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 297
PkrI GCNGC 2 cut(s) 11, 101
PshBI ATTAAT 1 cut(s) 378
PsiI TTATAA 1 cut(s) 302
PspN4I GGNNCC 2 cut(s) 76, 158
PspPI GGNCC 4 cut(s) 4, 75, 91, 334
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 227, 378
SatI GCNGC 2 cut(s) 10, 100
Sau3AI GATC 1 cut(s) 354
Sau96I GGNCC 4 cut(s) 4, 75, 91, 334
SduI GDGCHC 1 cut(s) 159
SetI ASST 2 cut(s) 104, 339
SfaNI GCATC 1 cut(s) 117
SinI GGWCC 1 cut(s) 334
Sse9I AATT 2 cut(s) 24, 368
SsiI CCGC 3 cut(s) 7, 10, 68
TaaI ACNGT 1 cut(s) 169
TasI AATT 2 cut(s) 24, 368
TauI GCSGC 1 cut(s) 12
Tru1I TTAA 2 cut(s) 227, 378
Tru9I TTAA 2 cut(s) 227, 378
TscAI CASTG 1 cut(s) 392
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 1 cut(s) 99
Tsp45I GTSAC 1 cut(s) 395
TspRI CASTG 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 334
VspI ATTAAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.