Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0019015

Physical Location & Seq

Genomic Coordinates Reverse (-)

74432673 .. 74433140

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG468900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCATGTCTTCAAAGACGCGCTCGGCAAGGCCCTTATGCCCTTTTACCCTTTGGTCGGACGCCTGAAGAGAAAAATAATAGATGAGGGCAAGAAGGGTCGTCTCGACATAGATTGCAATGCGGAGGAGGCCTTGTTTGTTGTAGCCCATTATAGCTCTTGCATCGATGACTTCAGCGATTTTGCACCCACTCCCAACTTCGGGAGAGGGTTCCTCCCTACTGTTGATTATTCTGGCCGGATATCTTCTTATCCTCTGTTGCTGGTTCAGATCACATATTTAAAATGTGGTGGAGTGGCAATTGGTGTTTGCATAGACCATCACTTAGCAGATGGATTATCTGCTCTTCACTTTATAAATACATGGTCTGATATGGCTCGTGGTCTGGACCTTGCAATCCCACCAACGATCAATAGGACATTACTTCGTGCTCGATCGAGACCCACCTCGGACTTTACTCAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

155

Amino Acids

17.15

Weight (kDa)

7.71

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	3 - 153	3.1e-38	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019015)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0066671
rosa_multiflora	Rmu_sc0000605.1_g000046 Rmu_sc0013613.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014510
rosa_samantha	Rh5BG454300 Rh5BG455200 Rh5CG476600 Rh5CG477300 Rh5DG468900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AccII	CGCG	1 cut(s)	20
AciI	CCGC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	235
AcuI	CTGAAG	2 cut(s)	86, 157
AcyI	GRCGYC	1 cut(s)	61
AfiI	CCNNNNNNNGG	3 cut(s)	56, 200, 201
AgsI	TTSAA	1 cut(s)	13
AluBI	AGCT	1 cut(s)	156
AluI	AGCT	1 cut(s)	156
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	2 cut(s)	107, 433
AoxI	GGCC	3 cut(s)	30, 129, 235
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	31, 388
AvaII	GGWCC	1 cut(s)	388
BauI	CACGAG	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	433
BccI	CCATC	2 cut(s)	326, 327
BcoDI	GTCTC	2 cut(s)	107, 433
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	31, 388
BmiI	GGNNCC	1 cut(s)	212
BmsI	GCATC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	198, 230
Bsa29I	ATCGAT	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	447
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 200, 201
Bse3DI	GCAATG	1 cut(s)	124
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	447
BseLI	CCNNNNNNNGG	3 cut(s)	56, 200, 201
BseMI	GCAATG	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	20
Bsh1285I	CGRYCG	1 cut(s)	437
BshFI	GGCC	3 cut(s)	32, 131, 237
BshVI	ATCGAT	1 cut(s)	165
BsiEI	CGRYCG	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	238
BslI	CCNNNNNNNGG	3 cut(s)	56, 200, 201
BsmAI	GTCTC	2 cut(s)	107, 433
BsmBI	CGTCTC	1 cut(s)	107
BsnI	GGCC	3 cut(s)	32, 131, 237
Bso31I	GGTCTC	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	3 cut(s)	270, 408, 434
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	3 cut(s)	32, 131, 237
BspDI	ATCGAT	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	212
BspQI	GCTCTTC	1 cut(s)	351
BspTNI	GGTCTC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	3 cut(s)	270, 408, 434
BssNI	GRCGYC	1 cut(s)	61
BssSI	CACGAG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	2 cut(s)	62, 351
BstACI	GRCGYC	1 cut(s)	61
BstDEI	CTNAG	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	3 cut(s)	273, 411, 437
BstMAI	GTCTC	2 cut(s)	107, 433
BstMBI	GATC	3 cut(s)	270, 408, 434
BstMCI	CGRYCG	1 cut(s)	437
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	8
BstUI	CGCG	1 cut(s)	20
Bsu15I	ATCGAT	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	32, 131, 237
BsuTUI	ATCGAT	1 cut(s)	165
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	31, 388
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	2 cut(s)	26, 69
CviAII	CATG	2 cut(s)	5, 363
CviJI	RGCY	6 cut(s)	32, 131, 146, 156, 237, 377
CviKI_1	RGCY	6 cut(s)	32, 131, 146, 156, 237, 377
DdeI	CTNAG	1 cut(s)	325
DpnI	GATC	3 cut(s)	272, 410, 436
DpnII	GATC	3 cut(s)	270, 408, 434
DraI	TTTAAA	1 cut(s)	282
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	62, 351
EarI	CTCTTC	2 cut(s)	62, 351
Eco147I	AGGCCT	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	433
Eco32I	GATATC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	388
Eco57I	CTGAAG	2 cut(s)	86, 157
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	243
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	2 cut(s)	8, 366
FatI	CATG	2 cut(s)	4, 362
GlaI	GCGC	1 cut(s)	21
HaeIII	GGCC	3 cut(s)	32, 131, 237
HapII	CCGG	1 cut(s)	238
HgaI	GACGC	2 cut(s)	26, 69
HhaI	GCGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	2 cut(s)	8, 366
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	238
Hpy188I	TCNGA	4 cut(s)	59, 270, 370, 451
Hpy188III	TCNNGA	4 cut(s)	104, 202, 386, 438
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	6 cut(s)	4, 117, 162, 185, 312, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	325
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	8, 366
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	3 cut(s)	270, 408, 434
LguI	GCTCTTC	1 cut(s)	351
LpnPI	CCDG	5 cut(s)	77, 219, 248, 251, 371
LweI	GCATC	1 cut(s)	171
MalI	GATC	3 cut(s)	272, 410, 436
MboI	GATC	3 cut(s)	270, 408, 434
MboII	GAAGA	3 cut(s)	79, 237, 338
MfeI	CAATTG	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	433
MluCI	AATT	1 cut(s)	300
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	7 cut(s)	79, 118, 121, 200, 224, 264, 457
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	281
MspI	CCGG	1 cut(s)	238
MunI	CAATTG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	3 cut(s)	270, 408, 434
NlaIII	CATG	2 cut(s)	8, 366
NlaIV	GGNNCC	1 cut(s)	212
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PceI	AGGCCT	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	351
Ple19I	CGATCG	1 cut(s)	437
PsiI	TTATAA	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	2 cut(s)	31, 388
PvuI	CGATCG	1 cut(s)	437
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	281
Sau3AI	GATC	3 cut(s)	270, 408, 434
Sau96I	GGNCC	2 cut(s)	31, 388
SduI	GDGCHC	1 cut(s)	433
SetI	ASST	3 cut(s)	158, 393, 449
SfaNI	GCATC	1 cut(s)	171
SinI	GGWCC	1 cut(s)	388
Sse9I	AATT	1 cut(s)	300
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	1 cut(s)	122
StuI	AGGCCT	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	4 cut(s)	105, 165, 433, 437
TasI	AATT	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	388
XceI	RCATGY	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.