Rh5CG476600

Shikimate O-hydroxycinnamoyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0019015
Physical Location & Seq
Forward (+)
66577129 .. 66577596
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG476600.1

Sequence Viewer

Length: 468 bp
ATGCATGTTTTCAAAGACGCGCTCGGCAAGGCCCTTGTGCCCTTTTACCCTTTGGTCGGCCGCCTGAAGCGAAAAATAATGGATGAGGGCAAGAAGGGTCGTCTCGACATAGATTGCAATGCGAAGGAGGCCTTGTTTGTTGTAGCCCACAGCAGCTCTTGCATCGATGACTTCAGCGATTTTGCACCCACTCCCAACTTCGGGAGAGGGTTCCTCCCTACTGTTGATTATTCCGGCGGGATATCTTCTTATCCTCTGTTGCTGGTACAGATCACATATTTAAAATGCAGTGGAGTGGCACTTGGTGTTCACATAGACCATCACTTAGCAGATGGATTATCTGCTCTTCACTTTATAAATACATGGTCTGATATGGCTCGTGGTCTGGACCTTGCAATCCCACCAACGATCGATACGACATTACTTCGTGCTCGATCGAGACCCACCTCGGACTTTACTCAACCATAA

Protein Analysis

155

Amino Acids

16.97

Weight (kDa)

7.0

Isoelectric Point (pI)

28.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 3 - 153 2.1e-35 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019015)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0066671
rosa_multiflora Rmu_sc0000605.1_g000046 Rmu_sc0013613.1_g000001
rosa_roxburghii Rroxscaffold_1G00014510
rosa_samantha Rh5BG454300 Rh5BG455200 Rh5CG476600 Rh5CG477300 Rh5DG468900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
AccII CGCG 1 cut(s) 20
AciI CCGC 2 cut(s) 61, 237
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 2 cut(s) 86, 157
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 3 cut(s) 56, 200, 201
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
Alw21I GWGCWC 1 cut(s) 433
Alw26I GTCTC 2 cut(s) 107, 433
AoxI GGCC 3 cut(s) 30, 58, 129
ApeKI GCWGC 1 cut(s) 153
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 2 cut(s) 31, 388
AvaII GGWCC 1 cut(s) 388
BaeGI GKGCMC 1 cut(s) 42
BauI CACGAG 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 433
BbvI GCAGC 1 cut(s) 165
BccI CCATC 2 cut(s) 326, 327
BcoDI GTCTC 2 cut(s) 107, 433
BisI GCNGC 2 cut(s) 61, 154
BlsI GCNGC 2 cut(s) 62, 155
Bme18I GGWCC 1 cut(s) 388
BmgT120I GGNCC 2 cut(s) 31, 388
BmiI GGNNCC 1 cut(s) 212
BmsI GCATC 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 198, 230
Bsa29I ATCGAT 2 cut(s) 165, 411
BsaI GGTCTC 1 cut(s) 433
BsaJI CCNNGG 1 cut(s) 447
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 200, 201
Bse3DI GCAATG 1 cut(s) 124
BseCI ATCGAT 2 cut(s) 165, 411
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 3 cut(s) 56, 200, 201
BseMI GCAATG 1 cut(s) 124
BseSI GKGCMC 1 cut(s) 42
BseX3I CGGCCG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 165
Bsh1236I CGCG 1 cut(s) 20
Bsh1285I CGRYCG 3 cut(s) 61, 411, 437
BshFI GGCC 3 cut(s) 32, 60, 131
BshVI ATCGAT 2 cut(s) 165, 411
BsiEI CGRYCG 3 cut(s) 61, 411, 437
BsiHKAI GWGCWC 1 cut(s) 433
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 3 cut(s) 56, 200, 201
BsmAI GTCTC 2 cut(s) 107, 433
BsmBI CGTCTC 1 cut(s) 107
BsnI GGCC 3 cut(s) 32, 60, 131
Bso31I GGTCTC 1 cut(s) 433
Bsp1286I GDGCHC 2 cut(s) 42, 433
Bsp143I GATC 3 cut(s) 270, 408, 434
BspACI CCGC 2 cut(s) 61, 237
BspANI GGCC 3 cut(s) 32, 60, 131
BspDI ATCGAT 2 cut(s) 165, 411
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 212
BspQI GCTCTTC 1 cut(s) 351
BspTNI GGTCTC 1 cut(s) 433
BsrDI GCAATG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 3 cut(s) 270, 408, 434
BssSI CACGAG 1 cut(s) 378
Bst2BI CACGAG 1 cut(s) 378
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 325
BstF5I GGATG 1 cut(s) 88
BstFNI CGCG 1 cut(s) 20
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 3 cut(s) 273, 411, 437
BstMAI GTCTC 2 cut(s) 107, 433
BstMBI GATC 3 cut(s) 270, 408, 434
BstMCI CGRYCG 3 cut(s) 61, 411, 437
BstMWI GCNNNNNNNGC 2 cut(s) 128, 159
BstNSI RCATGY 1 cut(s) 8
BstSLI GKGCMC 1 cut(s) 42
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 165
BstZI CGGCCG 1 cut(s) 58
Bsu15I ATCGAT 2 cut(s) 165, 411
BsuRI GGCC 3 cut(s) 32, 60, 131
BsuTUI ATCGAT 2 cut(s) 165, 411
BtsCI GGATG 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 295
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 31, 388
ClaI ATCGAT 2 cut(s) 165, 411
CseI GACGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 266
CviAII CATG 2 cut(s) 5, 363
CviJI RGCY 6 cut(s) 32, 60, 131, 146, 156, 377
CviKI_1 RGCY 6 cut(s) 32, 60, 131, 146, 156, 377
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 1 cut(s) 325
DpnI GATC 3 cut(s) 272, 410, 436
DpnII GATC 3 cut(s) 270, 408, 434
DraI TTTAAA 1 cut(s) 282
DraIII CACNNNGTG 1 cut(s) 305
EaeI YGGCCR 1 cut(s) 58
EagI CGGCCG 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
EclXI CGGCCG 1 cut(s) 58
Eco147I AGGCCT 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 433
Eco32I GATATC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 388
Eco52I CGGCCG 1 cut(s) 58
Eco57I CTGAAG 2 cut(s) 86, 157
EcoO109I RGGNCCY 1 cut(s) 31
EcoRV GATATC 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 2 cut(s) 8, 366
FaiI YATR 8 cut(s) 6, 110, 277, 314, 356, 364, 374, 466
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 2 cut(s) 4, 362
FauI CCCGC 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 61, 154
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 2 cut(s) 61, 154
GlaI GCGC 1 cut(s) 21
GluI GCNGC 2 cut(s) 61, 154
HaeIII GGCC 3 cut(s) 32, 60, 131
HapII CCGG 1 cut(s) 234
HgaI GACGC 1 cut(s) 26
HhaI GCGC 1 cut(s) 22
Hin1II CATG 2 cut(s) 8, 366
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HpaII CCGG 1 cut(s) 234
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 2 cut(s) 370, 451
Hpy188III TCNNGA 4 cut(s) 104, 202, 386, 438
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 2 cut(s) 88, 118
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 6 cut(s) 4, 117, 162, 185, 288, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 159
HpyF3I CTNAG 1 cut(s) 325
Hsp92II CATG 2 cut(s) 8, 366
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 3 cut(s) 270, 408, 434
LguI GCTCTTC 1 cut(s) 351
LpnPI CCDG 4 cut(s) 77, 247, 248, 371
Lsp1109I GCAGC 1 cut(s) 165
LweI GCATC 1 cut(s) 171
MalI GATC 3 cut(s) 272, 410, 436
MboI GATC 3 cut(s) 270, 408, 434
MboII GAAGA 2 cut(s) 237, 338
MhlI GDGCHC 2 cut(s) 42, 433
MnlI CCTC 6 cut(s) 79, 121, 200, 224, 264, 457
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 281
MspI CCGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 128, 159
NdeII GATC 3 cut(s) 270, 408, 434
NlaIII CATG 2 cut(s) 8, 366
NlaIV GGNNCC 1 cut(s) 212
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PceI AGGCCT 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PkrI GCNGC 2 cut(s) 62, 155
Ple19I CGATCG 2 cut(s) 411, 437
PsiI TTATAA 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 2 cut(s) 31, 388
PvuI CGATCG 2 cut(s) 411, 437
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 2 cut(s) 61, 154
Sau3AI GATC 3 cut(s) 270, 408, 434
Sau96I GGNCC 2 cut(s) 31, 388
SduI GDGCHC 2 cut(s) 42, 433
SetI ASST 3 cut(s) 158, 393, 449
SfaNI GCATC 1 cut(s) 171
SinI GGWCC 1 cut(s) 388
SseBI AGGCCT 1 cut(s) 131
SsiI CCGC 2 cut(s) 61, 237
StuI AGGCCT 1 cut(s) 131
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 5 cut(s) 105, 165, 411, 433, 437
TauI GCSGC 1 cut(s) 63
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TscAI CASTG 1 cut(s) 295
TseI GCWGC 1 cut(s) 153
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 388
XceI RCATGY 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.