Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0019015

Physical Location & Seq

Genomic Coordinates Forward (+)

66640927 .. 66641363

Gene Structure 437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG477300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGATGAGGGCAAGAAGGGTCGTCTCGACATAGATTGCAATGCGAAGGAGGCCTTGTTTGTTGTAGCCCACAGCAGCTCTTGCATCAATGACTTCAGCGATTTTGCACCCACTCCCAACTTCGGGAGAAGGTTCCTCCCTACTGTTGATTATTCCGGCGGGATATCTTCTTATCCTCTGTTGCTGGTACATATCACATATTTAAAATGCAGTGGAGTGGCACTTGGTGTTCACAGAGACCATCACTTAGCAGATGGATTATCTGCTCTTCACTTTATAAATACATGGTCTGATATGGCTCGTGGTCTGGACCTTGCAATCCCACCAACGATCGATAGGACATTACTTCGTGCTCGATCGAGACCCACCTCAGACTTTACTCAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

129

Amino Acids

14.2

Weight (kDa)

6.57

Isoelectric Point (pI)

28.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	6 - 127	3.9e-28	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019015)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0066671
rosa_multiflora	Rmu_sc0000605.1_g000046 Rmu_sc0013613.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014510
rosa_samantha	Rh5BG454300 Rh5BG455200 Rh5CG476600 Rh5CG477300 Rh5DG468900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AciI	CCGC	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	79
AdeI	CACNNNGTG	1 cut(s)	227
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	122, 123
AluBI	AGCT	1 cut(s)	78
AluI	AGCT	1 cut(s)	78
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	3 cut(s)	29, 231, 355
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	248, 249
BcoDI	GTCTC	3 cut(s)	29, 231, 355
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	134
BmsI	GCATC	1 cut(s)	93
Bsa29I	ATCGAT	1 cut(s)	333
BsaI	GGTCTC	2 cut(s)	231, 355
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 123
Bse3DI	GCAATG	1 cut(s)	46
BseCI	ATCGAT	1 cut(s)	333
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	122, 123
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	87
Bsh1285I	CGRYCG	2 cut(s)	333, 359
BshFI	GGCC	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	333
BsiEI	CGRYCG	2 cut(s)	333, 359
BsiHKAI	GWGCWC	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	122, 123
BsmAI	GTCTC	3 cut(s)	29, 231, 355
BsmBI	CGTCTC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	53
Bso31I	GGTCTC	2 cut(s)	231, 355
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	330, 356
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	383
BspDI	ATCGAT	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	134
BspQI	GCTCTTC	1 cut(s)	273
BspTNI	GGTCTC	2 cut(s)	231, 355
BsrDI	GCAATG	1 cut(s)	46
BssMI	GATC	2 cut(s)	330, 356
BssSI	CACGAG	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	273
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	247, 370
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	333, 359
BstMAI	GTCTC	3 cut(s)	29, 231, 355
BstMBI	GATC	2 cut(s)	330, 356
BstMCI	CGRYCG	2 cut(s)	333, 359
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 81
BstV1I	GCAGC	1 cut(s)	87
Bsu15I	ATCGAT	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	53
BsuTUI	ATCGAT	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	310
ClaI	ATCGAT	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	1 cut(s)	285
CviJI	RGCY	4 cut(s)	53, 68, 78, 299
CviKI_1	RGCY	4 cut(s)	53, 68, 78, 299
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	2 cut(s)	247, 370
DpnI	GATC	2 cut(s)	332, 358
DpnII	GATC	2 cut(s)	330, 356
DraI	TTTAAA	1 cut(s)	204
DraIII	CACNNNGTG	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco147I	AGGCCT	1 cut(s)	53
Eco31I	GGTCTC	2 cut(s)	231, 355
Eco32I	GATATC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	79
EcoRV	GATATC	1 cut(s)	165
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	1 cut(s)	288
FaiI	YATR	7 cut(s)	32, 192, 199, 278, 286, 296, 388
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	1 cut(s)	284
FauI	CCCGC	1 cut(s)	152
Fnu4HI	GCNGC	1 cut(s)	76
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	76
GluI	GCNGC	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	156
Hin1II	CATG	1 cut(s)	288
HpaII	CCGG	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	292, 373
Hpy188III	TCNNGA	4 cut(s)	26, 124, 308, 360
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	3 cut(s)	10, 40, 123
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	5 cut(s)	39, 84, 107, 210, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 81
HpyF3I	CTNAG	2 cut(s)	247, 370
Hsp92II	CATG	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	330, 356
LguI	GCTCTTC	1 cut(s)	273
LpnPI	CCDG	3 cut(s)	169, 170, 293
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	1 cut(s)	93
MalI	GATC	2 cut(s)	332, 358
MboI	GATC	2 cut(s)	330, 356
MboII	GAAGA	2 cut(s)	159, 260
MhlI	GDGCHC	1 cut(s)	355
MnlI	CCTC	4 cut(s)	43, 146, 186, 379
MseI	TTAA	1 cut(s)	203
MspI	CCGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	50, 81
NdeII	GATC	2 cut(s)	330, 356
NlaIII	CATG	1 cut(s)	288
NlaIV	GGNNCC	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	273
PkrI	GCNGC	1 cut(s)	77
Ple19I	CGATCG	2 cut(s)	333, 359
PsiI	TTATAA	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	310
PvuI	CGATCG	2 cut(s)	333, 359
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	1 cut(s)	76
Sau3AI	GATC	2 cut(s)	330, 356
Sau96I	GGNCC	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	4 cut(s)	80, 134, 315, 371
SfaNI	GCATC	1 cut(s)	93
SinI	GGWCC	1 cut(s)	310
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	4 cut(s)	27, 333, 355, 359
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	75
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.