Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000605.1

Orthogroup ID

OG0019015

Physical Location & Seq

Genomic Coordinates Forward (+)

184693 .. 185106

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000605.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgcatgtcttcaaagacgcgctcggcaaggcccttgtgcccttttaccctttggtcggccgcctgaagcgaaaaataatggatgagggcaagaagggttgtctcgacatagattgcaatgcgaagggggccttgtttgttgtagcccacagcagctgttgcatcgatgacttcagcgattttgcacccactcccaacttcgggatagggttcctccctactgttgattattccggcgggatatcttcttatcctctgttgctggtacagatcacatatttaaaatgtagtggagtggcacttggtgttcacatagaccatcacttagcagatggattatctgctcttcactttataaatacatggtctgatatggctcgtggtctggaccttgcaatcccttacatttgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

137

Amino Acids

14.85

Weight (kDa)

6.26

Isoelectric Point (pI)

22.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019015)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0066671
rosa_multiflora	Rmu_sc0000605.1_g000046 Rmu_sc0013613.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014510
rosa_samantha	Rh5BG454300 Rh5BG455200 Rh5CG476600 Rh5CG477300 Rh5DG468900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AccII	CGCG	1 cut(s)	20
AciI	CCGC	2 cut(s)	61, 237
AcoI	YGGCCR	1 cut(s)	58
AcuI	CTGAAG	2 cut(s)	86, 157
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	3 cut(s)	56, 200, 201
AgsI	TTSAA	1 cut(s)	13
AluBI	AGCT	1 cut(s)	156
AluI	AGCT	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	107
AlwNI	CAGNNNCTG	1 cut(s)	156
AoxI	GGCC	3 cut(s)	30, 58, 129
ApeKI	GCWGC	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	3 cut(s)	31, 129, 388
AvaII	GGWCC	1 cut(s)	388
BaeGI	GKGCMC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	2 cut(s)	326, 327
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	412
BisI	GCNGC	2 cut(s)	61, 154
BlsI	GCNGC	2 cut(s)	62, 155
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	3 cut(s)	31, 129, 388
BmiI	GGNNCC	2 cut(s)	130, 212
BmsI	GCATC	1 cut(s)	171
Bsa29I	ATCGAT	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 200, 201
Bse3DI	GCAATG	1 cut(s)	124
BseCI	ATCGAT	1 cut(s)	165
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	3 cut(s)	56, 200, 201
BseMI	GCAATG	1 cut(s)	124
BseSI	GKGCMC	1 cut(s)	42
BseX3I	CGGCCG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	20
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	3 cut(s)	32, 60, 131
BshVI	ATCGAT	1 cut(s)	165
BsiEI	CGRYCG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	3 cut(s)	56, 200, 201
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	3 cut(s)	32, 60, 131
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	270
BspACI	CCGC	2 cut(s)	61, 237
BspANI	GGCC	3 cut(s)	32, 60, 131
BspDI	ATCGAT	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	130, 212
BspQI	GCTCTTC	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	124
BssMI	GATC	1 cut(s)	270
BssSI	CACGAG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	351
BstAPI	GCANNNNNTGC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	270
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 159
BstNSI	RCATGY	1 cut(s)	8
BstSLI	GKGCMC	1 cut(s)	42
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	165
BstZI	CGGCCG	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	32, 60, 131
BsuTUI	ATCGAT	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	88
CaiI	CAGNNNCTG	1 cut(s)	156
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	3 cut(s)	31, 129, 388
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	2 cut(s)	5, 363
CviJI	RGCY	6 cut(s)	32, 60, 131, 146, 156, 377
CviKI_1	RGCY	6 cut(s)	32, 60, 131, 146, 156, 377
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	1 cut(s)	325
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
DraI	TTTAAA	1 cut(s)	282
DraIII	CACNNNGTG	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	58
EagI	CGGCCG	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
EclXI	CGGCCG	1 cut(s)	58
Eco32I	GATATC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	388
Eco52I	CGGCCG	1 cut(s)	58
Eco57I	CTGAAG	2 cut(s)	86, 157
EcoO109I	RGGNCCY	2 cut(s)	31, 129
EcoRV	GATATC	1 cut(s)	243
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 366
FaiI	YATR	7 cut(s)	6, 110, 277, 314, 356, 364, 374
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FatI	CATG	2 cut(s)	4, 362
FauI	CCCGC	1 cut(s)	230
Fnu4HI	GCNGC	2 cut(s)	61, 154
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	61, 154
FspBI	CTAG	1 cut(s)	412
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	2 cut(s)	61, 154
HaeIII	GGCC	3 cut(s)	32, 60, 131
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	8, 366
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	234
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	3 cut(s)	104, 202, 386
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	88, 118
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	5 cut(s)	4, 117, 162, 185, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 159
HpyF3I	CTNAG	1 cut(s)	325
Hsp92II	CATG	2 cut(s)	8, 366
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	270
LguI	GCTCTTC	1 cut(s)	351
LpnPI	CCDG	4 cut(s)	77, 247, 248, 371
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	1 cut(s)	412
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	2 cut(s)	237, 338
MhlI	GDGCHC	1 cut(s)	42
MnlI	CCTC	3 cut(s)	79, 224, 264
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	128, 159
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	2 cut(s)	8, 366
NlaIV	GGNNCC	2 cut(s)	130, 212
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	351
PkrI	GCNGC	2 cut(s)	62, 155
PsiI	TTATAA	1 cut(s)	356
PspN4I	GGNNCC	2 cut(s)	130, 212
PspPI	GGNCC	3 cut(s)	31, 129, 388
PstNI	CAGNNNCTG	1 cut(s)	156
PvuII	CAGCTG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	2 cut(s)	61, 154
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	3 cut(s)	31, 129, 388
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	2 cut(s)	158, 393
SfaNI	GCATC	1 cut(s)	171
SinI	GGWCC	1 cut(s)	388
SsiI	CCGC	2 cut(s)	61, 237
SspMI	CTAG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	105, 165
TauI	GCSGC	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseI	GCWGC	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	388
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	1 cut(s)	412
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.