RchiOBHm_Chr5g0078161

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
84091112 .. 84092256
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGTTTTTGGGGATCAACAAAATCAAAATGGGGCATAGCAAGCTAGCTCTTAACTGGGTTTCAATCTTGGTTCTTGTTCTAATGGTGGCTTCAATCCCATTTGTCCAATCTTCTCGCACCTGTCTCCAAGTAAGAACAACAACCATCTCAGAAAACAGAGGAACACAGGGGATTCAAATCAAGGAGGCTGATAAAGCATTTGGGAATGGAGCTAAGGTTCTCGGCAGTGTGGAAAACTCAGAGAGGCTAGTTCCAACTGGACCTGACCCCCTTCACCATAACAACAACCCCATTAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.87

Weight (kDa)

9.9

Isoelectric Point (pI)

21.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017261)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 20
AgsI TTSAA 3 cut(s) 63, 93, 176
AloI GAACNNNNNNTCC 2 cut(s) 201, 233
AluBI AGCT 3 cut(s) 43, 47, 212
AluI AGCT 3 cut(s) 43, 47, 212
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 266
AsuNHI GCTAGC 1 cut(s) 43
AvaII GGWCC 1 cut(s) 260
BccI CCATC 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 2 cut(s) 44, 248
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmrI ACTGGG 1 cut(s) 64
BmtI GCTAGC 1 cut(s) 47
BmuI ACTGGG 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bse1I ACTGG 2 cut(s) 59, 262
Bse8I GATNNNNATC 1 cut(s) 176
BseJI GATNNNNATC 1 cut(s) 176
BseMII CTCAG 2 cut(s) 162, 252
BseNI ACTGG 2 cut(s) 59, 262
BsmAI GTCTC 1 cut(s) 128
Bsp143I GATC 1 cut(s) 12
BspCNI CTCAG 2 cut(s) 161, 251
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 1 cut(s) 20
BsrI ACTGG 2 cut(s) 59, 262
BssMI GATC 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 41, 45
BstDEI CTNAG 3 cut(s) 148, 213, 238
BstKTI GATC 1 cut(s) 15
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 2 cut(s) 40, 194
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 2 cut(s) 41, 45
Cfr13I GGNCC 1 cut(s) 260
CviJI RGCY 6 cut(s) 43, 47, 89, 188, 212, 247
CviKI_1 RGCY 6 cut(s) 43, 47, 89, 188, 212, 247
DdeI CTNAG 3 cut(s) 148, 213, 238
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 260
FaiI YATR 2 cut(s) 36, 279
FspBI CTAG 2 cut(s) 44, 248
HinfI GANTC 1 cut(s) 172
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 2 cut(s) 151, 241
HpyAV CCTTC 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 194
HpyF3I CTNAG 3 cut(s) 148, 213, 238
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 5 cut(s) 40, 133, 152, 243, 276
MaeI CTAG 2 cut(s) 44, 248
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 3 cut(s) 152, 178, 237
MseI TTAA 2 cut(s) 51, 294
MwoI GCNNNNNNNGC 2 cut(s) 40, 194
NdeII GATC 1 cut(s) 12
NheI GCTAGC 1 cut(s) 43
NmeAIII GCCGAG 1 cut(s) 201
PfeI GAWTC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 260
SaqAI TTAA 2 cut(s) 51, 294
Sau3AI GATC 1 cut(s) 12
Sau96I GGNCC 1 cut(s) 260
SetI ASST 6 cut(s) 45, 49, 122, 214, 219, 265
SinI GGWCC 1 cut(s) 260
SspMI CTAG 2 cut(s) 44, 248
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 2 cut(s) 51, 294
Tru9I TTAA 2 cut(s) 51, 294
TscAI CASTG 1 cut(s) 232
TspRI CASTG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 260
XspI CTAG 2 cut(s) 44, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.