RchiOBHm_Chr4g0389721

E3 ubiquitin protein ligase DRIP2-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
4695808 .. 4699571
3764 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1290 bp
ATGATGACGACTAGCAGCAACCAAGTTGTGAAAGTTAAGAGGGAGAAGCTCGAGGCATGCATGACATGCCCCATGTGCAAAGGGCTATTCGAAGAAGCCACAACTATTTCTGAATGTCTTCACACATTTTGCAAGAAGTGCATATATGATAAAATAATCAATGAAGATTTGGATAGATGTCCAGTATGCAAGACAGATTTAGGGGTTGCTCCAATGGATAAGCTCAGGGCTGACAATAGTCTCGAAGACATAAGGGCGAAGCTCTTCCCTTCTGGAAGTAAAAAGGTCAAGGCACAAGCAGCGGACCGCAATCTGCAAGCTGTAGGCTCTGAAAAGGTCTTGCCTTCAGAAACAAGAAAAACCAAGGCACCTGAAGTTAATGTGCCCTCCATATTGTTACCAGGGAGAAGAAAGCAGAGATACCTCTCTTCATTAGGAACAAGCGCTCCTACAGTTACAACCAGGTCCTCTATGAAGTATTTTACCAGAAAGAGTTCAGCTCTTCAAGAGAGTCATCTTTCGACTGAAGAAGAGCCTGTTCACAAACATGAAGATTTTCCGGAGAGGGTTAAATCATCTGAGAACCTTAAAGAAGATGCAGCACATGCCAGACAGAATGCTACTGAGAAATTGTCTCAGAAAGATGGGGAGAATAATGGCAACGAGAACAAAGCACAACCAAGGTGGACAACTGGGCTGATGGAAGCTGAAAGAGAAGCTGCAAGAGTGCCAATAAGGCAAGTGTTCCTCAACCTCAACAATGAACCAGAAGAACTTCAACCCATTCAGGAACATGGCAATAATGGTGAATCTACTCCTGCACCATCAGTTTCAGTGCCAAGTGCCAAAGGCCAACGTGGCCGCAAAAGAAAAGCAGTATCAGAACCCGAGGAGTTAAAAACTCCAGCACAATCTGTGGTATCTGACGCAAACAATGAAGGTGAAACAATATTTAAACCAATCTGGTTCTCGTTGGAAGCTTATCCATGGGAAGGATATGCACCCTTGCCACAGATACCTTCATGTTACTTGAGAGTCAAAGATGGTAACTTACCCAGTTCTTTCATAAAGAAGTATCTGGTGAAAAAGCTGAATCTTCACAGCGAGGCGGAGGTGGAGATTCTATTGTGGGGTCGGCCGATACATCCCACATTGCAGCTGCATAACTTGGTGGATTTATGGTTACAGAAAATACCAGCATCACATAAGATAGAATCCTTTGTAGGCAGCTCGGCAAAGGAGTACGTGATGGTTATAACCTACTGTCGAAAAGTGCTACAGCACTGGTAG

Protein Analysis

429

Amino Acids

48.26

Weight (kDa)

8.74

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_2 PF13923 23 - 63 2.4e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 23 - 63 9.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 23 - 60 6.4e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1256
AccB1I GGYRCC 1 cut(s) 367
AccIII TCCGGA 1 cut(s) 559
AciI CCGC 4 cut(s) 302, 307, 862, 1109
AcoI YGGCCR 2 cut(s) 859, 1136
AcuI CTGAAG 3 cut(s) 330, 393, 546
AfaI GTAC 1 cut(s) 1244
AfeI AGCGCT 1 cut(s) 445
AfiI CCNNNNNNNGG 1 cut(s) 992
AgsI TTSAA 2 cut(s) 506, 779
AjnI CCWGG 2 cut(s) 400, 461
AloI GAACNNNNNNTCC 2 cut(s) 430, 462
Alw26I GTCTC 2 cut(s) 245, 639
Ama87I CYCGRG 2 cut(s) 50, 887
Aor13HI TCCGGA 1 cut(s) 559
Aor51HI AGCGCT 1 cut(s) 445
AoxI GGCC 3 cut(s) 850, 859, 1136
ApeKI GCWGC 7 cut(s) 15, 299, 599, 719, 1156, 1159, 1227
Asp700I GAANNNNTTC 5 cut(s) 117, 263, 493, 555, 774
AspLEI GCGC 1 cut(s) 446
AspS9I GGNCC 2 cut(s) 304, 465
AsuHPI GGTGA 3 cut(s) 818, 953, 1093
AsuII TTCGAA 1 cut(s) 90
AvaI CYCGRG 2 cut(s) 50, 887
AvaII GGWCC 2 cut(s) 304, 465
BaeGI GKGCMC 1 cut(s) 387
BanI GGYRCC 1 cut(s) 367
BbsI GAAGAC 2 cut(s) 110, 252
BbvI GCAGC 7 cut(s) 27, 311, 611, 706, 1146, 1168, 1239
BccI CCATC 5 cut(s) 638, 694, 832, 1037, 1243
BciT130I CCWGG 2 cut(s) 402, 463
BcoDI GTCTC 2 cut(s) 245, 639
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 3 cut(s) 321, 450, 1277
BfoI RGCGCY 1 cut(s) 447
BglI GCCNNNNNGGC 2 cut(s) 736, 858
BisI GCNGC 8 cut(s) 16, 300, 600, 720, 862, 1157, 1160, 1228
BlsI GCNGC 8 cut(s) 17, 301, 601, 721, 863, 1158, 1161, 1229
Bme1390I CCNGG 2 cut(s) 402, 463
Bme18I GGWCC 2 cut(s) 304, 465
BmeT110I CYCGRG 2 cut(s) 50, 887
BmgT120I GGNCC 2 cut(s) 304, 465
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 2 cut(s) 402, 463
BmrI ACTGGG 2 cut(s) 702, 1050
BmsI GCATC 2 cut(s) 586, 1208
BmuI ACTGGG 2 cut(s) 702, 1050
BoxI GACNNNNGTC 1 cut(s) 237
BpiI GAAGAC 2 cut(s) 110, 252
BplI GAGNNNNNCTC 2 cut(s) 484, 516
BpmI CTGGAG 1 cut(s) 888
Bpu10I CCTNAGC 1 cut(s) 224
Bpu14I TTCGAA 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 1051
BsaAI YACGTR 1 cut(s) 1246
BsaJI CCNNGG 5 cut(s) 363, 401, 680, 888, 986
BsaWI WCCGGW 1 cut(s) 559
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 1 cut(s) 992
Bse1I ACTGG 4 cut(s) 182, 697, 1056, 1289
Bse3DI GCAATG 1 cut(s) 1151
BseAI TCCGGA 1 cut(s) 559
BseBI CCWGG 2 cut(s) 402, 463
BseDI CCNNGG 5 cut(s) 363, 401, 680, 888, 986
BseGI GGATG 1 cut(s) 1144
BseLI CCNNNNNNNGG 1 cut(s) 992
BseMI GCAATG 1 cut(s) 1151
BseMII CTCAG 4 cut(s) 238, 570, 615, 650
BseNI ACTGG 4 cut(s) 182, 697, 1056, 1289
BseRI GAGGAG 1 cut(s) 905
BseSI GKGCMC 1 cut(s) 387
BseX3I CGGCCG 1 cut(s) 1136
BseXI GCAGC 7 cut(s) 27, 311, 611, 706, 1146, 1168, 1239
BsgI GTGCAG 1 cut(s) 804
Bsh1285I CGRYCG 1 cut(s) 1139
BshFI GGCC 3 cut(s) 852, 861, 1138
BshNI GGYRCC 1 cut(s) 367
BsiEI CGRYCG 1 cut(s) 1139
BsiHKCI CYCGRG 2 cut(s) 50, 887
BsiSI CCGG 1 cut(s) 560
BslI CCNNNNNNNGG 1 cut(s) 992
BsmAI GTCTC 2 cut(s) 245, 639
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 3 cut(s) 852, 861, 1138
BsoBI CYCGRG 2 cut(s) 50, 887
Bsp119I TTCGAA 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 387
Bsp13I TCCGGA 1 cut(s) 559
Bsp19I CCATGG 1 cut(s) 986
BspACI CCGC 4 cut(s) 302, 307, 862, 1109
BspANI GGCC 3 cut(s) 852, 861, 1138
BspCNI CTCAG 4 cut(s) 237, 571, 616, 649
BspEI TCCGGA 1 cut(s) 559
BspLI GGNNCC 1 cut(s) 369
BspQI GCTCTTC 3 cut(s) 269, 507, 525
BspT104I TTCGAA 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 1151
BsrI ACTGG 4 cut(s) 182, 697, 1056, 1289
BssECI CCNNGG 5 cut(s) 363, 401, 680, 888, 986
BssT1I CCWWGG 3 cut(s) 363, 680, 986
Bst2UI CCWGG 2 cut(s) 402, 463
Bst4CI ACNGT 2 cut(s) 454, 1265
Bst6I CTCTTC 4 cut(s) 269, 433, 507, 525
BstAPI GCANNNNNTGC 3 cut(s) 66, 138, 605
BstBAI YACGTR 1 cut(s) 1246
BstBI TTCGAA 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 58, 318
BstDEI CTNAG 4 cut(s) 224, 579, 624, 636
BstDSI CCRYGG 1 cut(s) 986
BstF5I GGATG 1 cut(s) 1144
BstH2I RGCGCY 1 cut(s) 447
BstHHI GCGC 1 cut(s) 446
BstMAI GTCTC 2 cut(s) 245, 639
BstMCI CGRYCG 1 cut(s) 1139
BstMWI GCNNNNNNNGC 7 cut(s) 66, 75, 138, 299, 605, 736, 858
BstNI CCWGG 2 cut(s) 402, 463
BstNSI RCATGY 3 cut(s) 60, 69, 608
BstPAI GACNNNNGTC 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 400, 461
BstSFI CTRYAG 3 cut(s) 321, 450, 1277
BstSLI GKGCMC 1 cut(s) 387
BstV1I GCAGC 7 cut(s) 27, 311, 611, 706, 1146, 1168, 1239
BstV2I GAAGAC 2 cut(s) 110, 252
BstZI CGGCCG 1 cut(s) 1136
BsuRI GGCC 3 cut(s) 852, 861, 1138
BtgI CCRYGG 1 cut(s) 986
BtsCI GGATG 1 cut(s) 1144
BtsIMutI CAGTG 2 cut(s) 840, 1282
Cac8I GCNNGC 2 cut(s) 58, 318
CfoI GCGC 1 cut(s) 446
Cfr13I GGNCC 2 cut(s) 304, 465
CpoI CGGWCCG 1 cut(s) 304
CseI GACGC 1 cut(s) 935
CsiI ACCWGGT 1 cut(s) 461
Csp6I GTAC 1 cut(s) 1243
CspCI CAANNNNNGTGG 2 cut(s) 665, 700
CspI CGGWCCG 1 cut(s) 304
CviAII CATG 9 cut(s) 57, 61, 66, 73, 548, 605, 794, 987, 1023
CviQI GTAC 1 cut(s) 1243
DdeI CTNAG 4 cut(s) 224, 579, 624, 636
DraI TTTAAA 1 cut(s) 955
EaeI YGGCCR 2 cut(s) 859, 1136
EagI CGGCCG 1 cut(s) 1136
Eam1104I CTCTTC 4 cut(s) 269, 433, 507, 525
EarI CTCTTC 4 cut(s) 269, 433, 507, 525
EciI GGCGGA 1 cut(s) 1124
EclXI CGGCCG 1 cut(s) 1136
Eco130I CCWWGG 3 cut(s) 363, 680, 986
Eco47I GGWCC 2 cut(s) 304, 465
Eco47III AGCGCT 1 cut(s) 445
Eco52I CGGCCG 1 cut(s) 1136
Eco57I CTGAAG 3 cut(s) 330, 393, 546
Eco88I CYCGRG 2 cut(s) 50, 887
EcoO109I RGGNCCY 1 cut(s) 465
EcoRII CCWGG 2 cut(s) 400, 461
EcoT14I CCWWGG 3 cut(s) 363, 680, 986
EcoT22I ATGCAT 1 cut(s) 62
ErhI CCWWGG 3 cut(s) 363, 680, 986
FaeI CATG 9 cut(s) 60, 64, 69, 76, 551, 608, 797, 990, 1026
FatI CATG 9 cut(s) 56, 60, 65, 72, 547, 604, 793, 986, 1022
Fnu4HI GCNGC 8 cut(s) 16, 300, 600, 720, 862, 1157, 1160, 1228
FokI GGATG 1 cut(s) 1131
Fsp4HI GCNGC 8 cut(s) 16, 300, 600, 720, 862, 1157, 1160, 1228
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 445
GluI GCNGC 8 cut(s) 16, 300, 600, 720, 862, 1157, 1160, 1228
GsuI CTGGAG 1 cut(s) 888
HaeII RGCGCY 1 cut(s) 447
HaeIII GGCC 3 cut(s) 852, 861, 1138
HapII CCGG 1 cut(s) 560
HgaI GACGC 1 cut(s) 935
HhaI GCGC 1 cut(s) 446
Hin1II CATG 9 cut(s) 60, 64, 69, 76, 551, 608, 797, 990, 1026
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HindIII AAGCTT 1 cut(s) 978
HinfI GANTC 6 cut(s) 511, 809, 1035, 1093, 1120, 1214
HpaII CCGG 1 cut(s) 560
HphI GGTGA 3 cut(s) 818, 953, 1093
Hpy166II GTNNAC 2 cut(s) 541, 687
Hpy188I TCNGA 7 cut(s) 112, 331, 349, 580, 639, 883, 925
Hpy188III TCNNGA 5 cut(s) 242, 273, 506, 560, 788
Hpy8I GTNNAC 2 cut(s) 541, 687
HpyAV CCTTC 5 cut(s) 279, 354, 932, 986, 1029
HpyCH4III ACNGT 2 cut(s) 454, 1265
HpyCH4IV ACGT 2 cut(s) 856, 1245
HpyF10VI GCNNNNNNNGC 7 cut(s) 66, 75, 138, 299, 605, 736, 858
HpyF3I CTNAG 4 cut(s) 224, 579, 624, 636
HpySE526I ACGT 2 cut(s) 856, 1245
Hsp92II CATG 9 cut(s) 60, 64, 69, 76, 551, 608, 797, 990, 1026
HspAI GCGC 1 cut(s) 444
Kpn2I TCCGGA 1 cut(s) 559
LguI GCTCTTC 3 cut(s) 269, 507, 525
LmnI GCTCC 2 cut(s) 214, 451
Lsp1109I GCAGC 7 cut(s) 27, 311, 611, 706, 1146, 1168, 1239
LweI GCATC 2 cut(s) 586, 1208
MabI ACCWGGT 1 cut(s) 461
MaeI CTAG 1 cut(s) 12
MaeII ACGT 2 cut(s) 856, 1245
MaeIII GTNAC 5 cut(s) 396, 454, 1025, 1046, 1182
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 1 cut(s) 629
MlyI GAGTC 2 cut(s) 520, 1044
MmeI TCCRAC 1 cut(s) 954
Mph1103I ATGCAT 1 cut(s) 62
MroI TCCGGA 1 cut(s) 559
MroXI GAANNNNTTC 5 cut(s) 117, 263, 493, 555, 774
MseI TTAA 6 cut(s) 36, 378, 570, 588, 896, 954
MslI CAYNNNNRTG 1 cut(s) 546
MspA1I CMGCKG 2 cut(s) 302, 1159
MspI CCGG 1 cut(s) 560
MspR9I CCNGG 2 cut(s) 402, 463
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 2 cut(s) 402, 463
MwoI GCNNNNNNNGC 7 cut(s) 66, 75, 138, 299, 605, 736, 858
NcoI CCATGG 1 cut(s) 986
NlaIII CATG 9 cut(s) 60, 64, 69, 76, 551, 608, 797, 990, 1026
NlaIV GGNNCC 1 cut(s) 369
NmeAIII GCCGAG 1 cut(s) 1211
NsiI ATGCAT 1 cut(s) 62
NspI RCATGY 3 cut(s) 60, 69, 608
NspV TTCGAA 1 cut(s) 90
PaeI GCATGC 1 cut(s) 60
PaeR7I CTCGAG 1 cut(s) 50
PciSI GCTCTTC 3 cut(s) 269, 507, 525
PctI GAATGC 1 cut(s) 622
PdmI GAANNNNTTC 5 cut(s) 117, 263, 493, 555, 774
PfeI GAWTC 4 cut(s) 809, 1093, 1120, 1214
PkrI GCNGC 8 cut(s) 17, 301, 601, 721, 863, 1158, 1161, 1229
PleI GAGTC 2 cut(s) 519, 1043
PpsI GAGTC 2 cut(s) 519, 1043
Ppu21I YACGTR 1 cut(s) 1246
PpuMI RGGWCCY 1 cut(s) 465
PshAI GACNNNNGTC 1 cut(s) 237
PsiI TTATAA 1 cut(s) 1256
Psp5II RGGWCCY 1 cut(s) 465
Psp6I CCWGG 2 cut(s) 400, 461
PspGI CCWGG 2 cut(s) 400, 461
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 2 cut(s) 304, 465
PspPPI RGGWCCY 1 cut(s) 465
PspXI VCTCGAGB 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 1159
RsaI GTAC 1 cut(s) 1244
RsaNI GTAC 1 cut(s) 1243
RseI CAYNNNNRTG 1 cut(s) 546
Rsr2I CGGWCCG 1 cut(s) 304
RsrII CGGWCCG 1 cut(s) 304
SapI GCTCTTC 3 cut(s) 269, 507, 525
SaqAI TTAA 6 cut(s) 36, 378, 570, 588, 896, 954
SatI GCNGC 8 cut(s) 16, 300, 600, 720, 862, 1157, 1160, 1228
Sau96I GGNCC 2 cut(s) 304, 465
SchI GAGTC 2 cut(s) 520, 1044
ScrFI CCNGG 2 cut(s) 402, 463
SduI GDGCHC 1 cut(s) 387
SexAI ACCWGGT 1 cut(s) 461
SfaNI GCATC 2 cut(s) 586, 1208
SfcI CTRYAG 3 cut(s) 321, 450, 1277
SfiI GGCCNNNNNGGCC 1 cut(s) 858
Sfr274I CTCGAG 1 cut(s) 50
SfuI TTCGAA 1 cut(s) 90
SinI GGWCC 2 cut(s) 304, 465
SlaI CTCGAG 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 546
SmlI CTYRAG 2 cut(s) 50, 1030
SmoI CTYRAG 2 cut(s) 50, 1030
SphI GCATGC 1 cut(s) 60
Sse9I AATT 1 cut(s) 629
SsiI CCGC 4 cut(s) 302, 307, 862, 1109
SspI AATATT 1 cut(s) 951
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 400, 461
StyI CCWWGG 3 cut(s) 363, 680, 986
TaaI ACNGT 2 cut(s) 454, 1265
TaiI ACGT 2 cut(s) 859, 1248
TaqI TCGA 5 cut(s) 51, 90, 243, 521, 1267
TasI AATT 1 cut(s) 629
TauI GCSGC 1 cut(s) 864
TfiI GAWTC 4 cut(s) 809, 1093, 1120, 1214
Tru1I TTAA 6 cut(s) 36, 378, 570, 588, 896, 954
Tru9I TTAA 6 cut(s) 36, 378, 570, 588, 896, 954
TscAI CASTG 2 cut(s) 840, 1289
TseI GCWGC 7 cut(s) 15, 299, 599, 719, 1156, 1159, 1227
TspDTI ATGAA 8 cut(s) 177, 420, 488, 564, 777, 951, 1011, 1054
TspRI CASTG 2 cut(s) 840, 1289
VpaK11BI GGWCC 2 cut(s) 304, 465
XceI RCATGY 3 cut(s) 60, 69, 608
XhoI CTCGAG 1 cut(s) 50
XmnI GAANNNNTTC 5 cut(s) 117, 263, 493, 555, 774
XspI CTAG 1 cut(s) 12
Zsp2I ATGCAT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.