RchiOBHm_Chr4g0414691

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018594
Physical Location & Seq
Reverse (-)
39233135 .. 39235239
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1065 bp
ATGCCAAAGGAATTAGCAAAAGAAACGCAGGTAATGAATCCAAAGCCAAACAACAAGCATCCCCAAGTGGAATCGGGAAAGCACAGGAGCAACACTGAACCACTGAAGAAGAAGGAGAAGGAGAAGAAGAAGAAGGGTCAGCCAAGCATTATGGGTAAAGGAAGACGAAGATGGGAGGACTTAGAAAGGGACTGCTTGGTGAATGTTTTCAGAAGAGTGGGTATGGAGTCACAGCTATTCGATGTGCCTTTCGTGTGCAAGTCATGGTTTACAGCAACCCTTGATCCTTCATGCTGGCAATATCTCATTTTTCCAGATATTCCATCTGATCTTGCTGACCGTTTGGACAATATATTTTCGTTTATTCATCTTAGTGATTCCATTGAGCTTTATCCTGACTTTGATCCCTTAATAAGAAGATATATAGGAGCTTATCGATTTGGATCAAGCCACTTATCTATTACTGCTTTTGTTGAGTTTGTCTTTCGTCGGAGCAATGGGAATGTCGTGTTTCTGAAGGTACCTCGCCACTGTCCAAAAGCTGCTCTAAAGTCTGTAGCACATGCGTGTCCTGACCTGAAGGCTTTGGCTTTGCCGAGAGACGCGTTGAAATCAGATGTAGTTCCTGAATTGGTTGCCAACTTGACAAGTTTGAGGTCGTTGTTGTTATTAGGAAGCTGCAATTATATTGAGAAAATTTTATTACCAATCAGCAAGTACTGCAAGAAATTTCGTGGTTTATGTTTTTATGATGCTTATATTACTGAAGAGGCTGCATCTGCTATTGTTAACTCATTGCCGAATATCAAGTACTTGATTCTGAGGAGCACTTTGATTAGACCGAATGGCTTGATCACACTGCTGCGCGGCTGCAAACAGCTTGTGCTTTTGCATCTCAGTGAGTGTCCCTGTTTTCGGGTCAACGATGAGATACTGAATCTGGCATCTCATATTAGCGACTTCAGATTTTCCAATCATTTTGGAGGTTTTCAAGGTTACTATGTGGACGATGAGCTAGGCTATATTAATTTTGATGAAGGCACCAGTGACGACGACTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

354

Amino Acids

40.47

Weight (kDa)

8.53

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018594)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0414691
rosa_laevigata RLG00000008123
rosa_multiflora Rmu_sc0001192.1_g000022 Rmu_sc0010606.1_g000002
rosa_roxburghii Rroxscaffold_5G00358490
rosa_rugosa Rorug04G0129600
rosa_samantha Rh4AG188100 Rh4BG186800 Rh4CG200200 Rh4DG186800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 19
Acc65I GGTACC 1 cut(s) 520
AccB1I GGYRCC 2 cut(s) 520, 1040
AccII CGCG 2 cut(s) 605, 867
AciI CCGC 1 cut(s) 867
AclWI GGATC 3 cut(s) 278, 398, 451
AcsI RAATTY 2 cut(s) 696, 728
AcuI CTGAAG 5 cut(s) 125, 536, 599, 786, 946
AfaI GTAC 3 cut(s) 522, 719, 812
AfiI CCNNNNNNNGG 1 cut(s) 915
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 2 cut(s) 610, 992
AleI CACNNNNGTG 1 cut(s) 565
AluBI AGCT 7 cut(s) 235, 388, 431, 542, 678, 880, 1015
AluI AGCT 7 cut(s) 235, 388, 431, 542, 678, 880, 1015
Alw21I GWGCWC 1 cut(s) 830
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 3 cut(s) 278, 398, 451
ApeKI GCWGC 5 cut(s) 542, 678, 773, 862, 870
ApoI RAATTY 2 cut(s) 696, 728
AseI ATTAAT 1 cut(s) 1026
Asp700I GAANNNNTTC 1 cut(s) 206
Asp718I GGTACC 1 cut(s) 520
AspLEI GCGC 1 cut(s) 867
AsuHPI GGTGA 1 cut(s) 211
BanI GGYRCC 2 cut(s) 520, 1040
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 830
BbvI GCAGC 5 cut(s) 529, 665, 760, 849, 857
BccI CCATC 2 cut(s) 165, 331
BclI TGATCA 1 cut(s) 852
BcoDI GTCTC 1 cut(s) 594
BfaI CTAG 1 cut(s) 1016
BfmI CTRYAG 1 cut(s) 555
BfuAI ACCTGC 1 cut(s) 19
BisI GCNGC 6 cut(s) 543, 679, 774, 863, 868, 871
BlsI GCNGC 6 cut(s) 544, 680, 775, 864, 869, 872
BmcAI AGTACT 2 cut(s) 719, 812
BmiI GGNNCC 2 cut(s) 522, 1042
BmsI GCATC 5 cut(s) 67, 742, 785, 901, 953
BpiI GAAGAC 1 cut(s) 169
Bsa29I ATCGAT 1 cut(s) 436
BsaBI GATNNNNATC 1 cut(s) 442
Bsc4I CCNNNNNNNGG 1 cut(s) 915
Bse1I ACTGG 1 cut(s) 1044
Bse3DI GCAATG 2 cut(s) 502, 794
Bse8I GATNNNNATC 1 cut(s) 442
BseCI ATCGAT 1 cut(s) 436
BseGI GGATG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 442
BseLI CCNNNNNNNGG 1 cut(s) 915
BseMI GCAATG 2 cut(s) 502, 794
BseMII CTCAG 2 cut(s) 812, 910
BseNI ACTGG 1 cut(s) 1044
BseRI GAGGAG 1 cut(s) 838
BseXI GCAGC 5 cut(s) 529, 665, 760, 849, 857
Bsh1236I CGCG 2 cut(s) 605, 867
BshNI GGYRCC 2 cut(s) 520, 1040
BshVI ATCGAT 1 cut(s) 436
BsiHKAI GWGCWC 1 cut(s) 830
BslFI GGGAC 2 cut(s) 203, 891
BslI CCNNNNNNNGG 1 cut(s) 915
BsmAI GTCTC 1 cut(s) 594
BsmBI CGTCTC 1 cut(s) 594
BsmFI GGGAC 2 cut(s) 203, 891
Bsp1286I GDGCHC 1 cut(s) 830
Bsp143I GATC 5 cut(s) 283, 328, 403, 443, 852
BspACI CCGC 1 cut(s) 867
BspCNI CTCAG 2 cut(s) 813, 909
BspDI ATCGAT 1 cut(s) 436
BspFNI CGCG 2 cut(s) 605, 867
BspLI GGNNCC 2 cut(s) 522, 1042
BspMI ACCTGC 1 cut(s) 19
BspPI GGATC 3 cut(s) 278, 398, 451
BspT107I GGYRCC 2 cut(s) 520, 1040
BsrDI GCAATG 2 cut(s) 502, 794
BsrI ACTGG 1 cut(s) 1044
BssMI GATC 5 cut(s) 283, 328, 403, 443, 852
Bst4CI ACNGT 2 cut(s) 341, 533
Bst6I CTCTTC 2 cut(s) 208, 762
BstAPI GCANNNNNTGC 1 cut(s) 720
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 4 cut(s) 181, 371, 821, 896
BstF5I GGATG 1 cut(s) 58
BstFNI CGCG 2 cut(s) 605, 867
BstHHI GCGC 1 cut(s) 867
BstKTI GATC 5 cut(s) 286, 331, 406, 446, 855
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 5 cut(s) 283, 328, 403, 443, 852
BstMWI GCNNNNNNNGC 2 cut(s) 720, 779
BstNSI RCATGY 1 cut(s) 566
BstSFI CTRYAG 1 cut(s) 555
BstUI CGCG 2 cut(s) 605, 867
BstV1I GCAGC 5 cut(s) 529, 665, 760, 849, 857
BstV2I GAAGAC 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 436
BsuTUI ATCGAT 1 cut(s) 436
BtsCI GGATG 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 857
BtsIMutI CAGTG 6 cut(s) 93, 101, 529, 857, 904, 1051
BveI ACCTGC 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 296
CfoI GCGC 1 cut(s) 867
ClaI ATCGAT 1 cut(s) 436
CseI GACGC 1 cut(s) 611
Csp6I GTAC 3 cut(s) 521, 718, 811
CviAII CATG 3 cut(s) 264, 291, 563
CviQI GTAC 3 cut(s) 521, 718, 811
DdeI CTNAG 4 cut(s) 181, 371, 821, 896
DpnI GATC 5 cut(s) 285, 330, 405, 445, 854
DpnII GATC 5 cut(s) 283, 328, 403, 443, 852
Eam1104I CTCTTC 2 cut(s) 208, 762
EarI CTCTTC 2 cut(s) 208, 762
Eco57I CTGAAG 5 cut(s) 125, 536, 599, 786, 946
Esp3I CGTCTC 1 cut(s) 594
FaeI CATG 3 cut(s) 267, 294, 566
FaqI GGGAC 2 cut(s) 203, 891
FatI CATG 3 cut(s) 263, 290, 562
FbaI TGATCA 1 cut(s) 852
Fnu4HI GCNGC 6 cut(s) 543, 679, 774, 863, 868, 871
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 6 cut(s) 543, 679, 774, 863, 868, 871
FspBI CTAG 1 cut(s) 1016
GlaI GCGC 1 cut(s) 866
GluI GCNGC 6 cut(s) 543, 679, 774, 863, 868, 871
HgaI GACGC 1 cut(s) 611
HhaI GCGC 1 cut(s) 867
Hin1II CATG 3 cut(s) 267, 294, 566
Hin6I GCGC 1 cut(s) 865
HinP1I GCGC 1 cut(s) 865
HincII GTYRAC 2 cut(s) 790, 922
HindII GTYRAC 2 cut(s) 790, 922
HinfI GANTC 6 cut(s) 37, 71, 227, 377, 817, 937
HpaI GTTAAC 1 cut(s) 790
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 4 cut(s) 270, 790, 922, 1006
Hpy188I TCNGA 7 cut(s) 212, 328, 492, 516, 616, 822, 965
Hpy188III TCNNGA 5 cut(s) 75, 314, 395, 572, 626
Hpy8I GTNNAC 4 cut(s) 270, 790, 922, 1006
Hpy99I CGWCG 2 cut(s) 492, 1055
HpyAV CCTTC 7 cut(s) 106, 112, 127, 297, 511, 574, 1031
HpyCH4III ACNGT 2 cut(s) 341, 533
HpyCH4V TGCA 6 cut(s) 258, 681, 723, 776, 873, 892
HpyF10VI GCNNNNNNNGC 2 cut(s) 720, 779
HpyF3I CTNAG 4 cut(s) 181, 371, 821, 896
Hsp92II CATG 3 cut(s) 267, 294, 566
HspAI GCGC 1 cut(s) 865
KpnI GGTACC 1 cut(s) 524
Ksp22I TGATCA 1 cut(s) 852
KspAI GTTAAC 1 cut(s) 790
Kzo9I GATC 5 cut(s) 283, 328, 403, 443, 852
LmnI GCTCC 4 cut(s) 87, 428, 492, 825
Lsp1109I GCAGC 5 cut(s) 529, 665, 760, 849, 857
LweI GCATC 5 cut(s) 67, 742, 785, 901, 953
MaeI CTAG 1 cut(s) 1016
MaeIII GTNAC 3 cut(s) 228, 995, 1046
MalI GATC 5 cut(s) 285, 330, 405, 445, 854
MboI GATC 5 cut(s) 283, 328, 403, 443, 852
MhlI GDGCHC 1 cut(s) 830
MluCI AATT 6 cut(s) 11, 629, 682, 696, 728, 1027
MluI ACGCGT 1 cut(s) 603
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 470
MnlI CCTC 6 cut(s) 169, 534, 648, 763, 816, 977
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 4 cut(s) 410, 789, 1026, 1063
MslI CAYNNNNRTG 3 cut(s) 372, 565, 897
MvnI CGCG 2 cut(s) 605, 867
MwoI GCNNNNNNNGC 2 cut(s) 720, 779
NdeII GATC 5 cut(s) 283, 328, 403, 443, 852
NlaIII CATG 3 cut(s) 267, 294, 566
NlaIV GGNNCC 2 cut(s) 522, 1042
NmeAIII GCCGAG 1 cut(s) 621
NmuCI GTSAC 2 cut(s) 228, 1046
NspI RCATGY 1 cut(s) 566
OliI CACNNNNGTG 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 5 cut(s) 37, 71, 377, 817, 937
PkrI GCNGC 6 cut(s) 544, 680, 775, 864, 869, 872
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PshBI ATTAAT 1 cut(s) 1026
PspN4I GGNNCC 2 cut(s) 522, 1042
RsaI GTAC 3 cut(s) 522, 719, 812
RsaNI GTAC 3 cut(s) 521, 718, 811
RseI CAYNNNNRTG 3 cut(s) 372, 565, 897
SaqAI TTAA 4 cut(s) 410, 789, 1026, 1063
SatI GCNGC 6 cut(s) 543, 679, 774, 863, 868, 871
Sau3AI GATC 5 cut(s) 283, 328, 403, 443, 852
ScaI AGTACT 2 cut(s) 719, 812
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 1 cut(s) 830
SfaNI GCATC 5 cut(s) 67, 742, 785, 901, 953
SfcI CTRYAG 1 cut(s) 555
SmiMI CAYNNNNRTG 3 cut(s) 372, 565, 897
Sse9I AATT 6 cut(s) 11, 629, 682, 696, 728, 1027
SsiI CCGC 1 cut(s) 867
SspMI CTAG 1 cut(s) 1016
TaaI ACNGT 2 cut(s) 341, 533
TaqI TCGA 2 cut(s) 240, 436
TaqII GACCGA 1 cut(s) 856
TasI AATT 6 cut(s) 11, 629, 682, 696, 728, 1027
TatI WGTACW 2 cut(s) 717, 810
TauI GCSGC 1 cut(s) 870
TfiI GAWTC 5 cut(s) 37, 71, 377, 817, 937
Tru1I TTAA 4 cut(s) 410, 789, 1026, 1063
Tru9I TTAA 4 cut(s) 410, 789, 1026, 1063
TscAI CASTG 6 cut(s) 100, 108, 536, 864, 904, 1051
TseFI GTSAC 2 cut(s) 228, 1046
TseI GCWGC 5 cut(s) 542, 678, 773, 862, 870
Tsp45I GTSAC 2 cut(s) 228, 1046
TspDTI ATGAA 4 cut(s) 50, 279, 356, 1050
TspRI CASTG 6 cut(s) 100, 108, 536, 864, 904, 1051
VspI ATTAAT 1 cut(s) 1026
XapI RAATTY 2 cut(s) 696, 728
XceI RCATGY 1 cut(s) 566
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 1 cut(s) 1016
ZrmI AGTACT 2 cut(s) 719, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.