Rh4BG186800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0018594
Physical Location & Seq
Reverse (-)
32618439 .. 32619884
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG186800.1

Sequence Viewer

Length: 924 bp
ATGTTCTTTATGGGTAAAGGAAGACGAAGATGGGAGGACTTAGAGAGGGACTGCTTGGTGAATGTTTTCAGAAGAGTGGGTATGGAGTCACTGCTATTCGATGTGCCTTTCGTGTGCAAGTCATGGTTTACAGCAACCCTTGATCCTTCATGCTGGCAATATCTCATTTTTCCAGATATTCCATCTGATCTTGCTGACCGTTTGGACAATATATTTTCATTTATTTATCTTAGTGATTCCATTGAGCTTTATCCTGACTTTGATCCCTTAATAAGAAGATATATAGGAGCTTATCGATTTGGATCAAGCCACTTATCTATTACTGCTTTTGTTGAGTTTGTCTTTCGTCGGAGCAATGGGAATGTCGTGTTTCTGAAGGTACCTCGCCACTGTCCAAAAGCTGCTCTAAAGTCTGTAGCATATGCGTGTCCTGACCTGAAGGCTTTGGCTTTGCCGAGAGACGCGTTGAAATCAGATGTAGTTCCTGAATTGGTTGCCAGCTTGACAAGTTTGAGGTCGTTGTTGTTATTAGGAAGCTGCAATTATATTGAGAAAATTTTATTACCAATCAGCAAGTACTGCAAGAAATTTCGTGGTTTATGTTTTTATGATGCTTATATTACTGAAGAGGCTGCATCTGCGATTGTTAACTCATTGCCGAATATCAAGTACTTGATTCTGAGGAGCACTTTGATTAGACCGGATGGCTTGATCACATTGCTGCGCGGCTGCAAACAGCTTGTGCTTTTGCATCTCAGTGAGTGTCCCTGTTTTCGGGTCAACGATGAGATACTGAACCTGGCATCTCGTATTAGCGACTTCAGATTTTCCAATCATTTTGGAGGTTTTCAAGGTTACTATGTGAACGATGAGCTAGGCTATATTAATTTTGATGAAGGCACCAGTGACGACGACTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

307

Amino Acids

35.18

Weight (kDa)

6.13

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018594)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0414691
rosa_laevigata RLG00000008123
rosa_multiflora Rmu_sc0001192.1_g000022 Rmu_sc0010606.1_g000002
rosa_roxburghii Rroxscaffold_5G00358490
rosa_rugosa Rorug04G0129600
rosa_samantha Rh4AG188100 Rh4BG186800 Rh4CG200200 Rh4DG186800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 379
AccB1I GGYRCC 2 cut(s) 379, 899
AccII CGCG 2 cut(s) 464, 726
AciI CCGC 1 cut(s) 726
AclWI GGATC 3 cut(s) 137, 257, 310
AcsI RAATTY 2 cut(s) 555, 587
AcuI CTGAAG 4 cut(s) 395, 458, 645, 805
AfaI GTAC 3 cut(s) 381, 578, 671
AfiI CCNNNNNNNGG 1 cut(s) 774
AflIII ACRYGT 1 cut(s) 462
AgsI TTSAA 2 cut(s) 469, 851
AjnI CCWGG 1 cut(s) 798
AluBI AGCT 7 cut(s) 247, 290, 401, 501, 537, 739, 874
AluI AGCT 7 cut(s) 247, 290, 401, 501, 537, 739, 874
Alw21I GWGCWC 1 cut(s) 689
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 3 cut(s) 137, 257, 310
ApeKI GCWGC 5 cut(s) 401, 537, 632, 721, 729
ApoI RAATTY 2 cut(s) 555, 587
AseI ATTAAT 1 cut(s) 885
Asp700I GAANNNNTTC 1 cut(s) 65
Asp718I GGTACC 1 cut(s) 379
AspLEI GCGC 1 cut(s) 726
AsuHPI GGTGA 1 cut(s) 70
BanI GGYRCC 2 cut(s) 379, 899
BbsI GAAGAC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 689
BbvI GCAGC 5 cut(s) 388, 524, 619, 708, 716
BccI CCATC 3 cut(s) 24, 190, 698
BciT130I CCWGG 1 cut(s) 800
BclI TGATCA 1 cut(s) 711
BcoDI GTCTC 1 cut(s) 453
BfaI CTAG 1 cut(s) 875
BfmI CTRYAG 1 cut(s) 414
BisI GCNGC 6 cut(s) 402, 538, 633, 722, 727, 730
BlsI GCNGC 6 cut(s) 403, 539, 634, 723, 728, 731
BmcAI AGTACT 2 cut(s) 578, 671
Bme1390I CCNGG 1 cut(s) 800
BmiI GGNNCC 2 cut(s) 381, 901
BmrFI CCNGG 1 cut(s) 800
BmsI GCATC 4 cut(s) 601, 644, 760, 812
BpiI GAAGAC 1 cut(s) 28
Bsa29I ATCGAT 1 cut(s) 295
BsaBI GATNNNNATC 1 cut(s) 301
BsaWI WCCGGW 1 cut(s) 700
Bsc4I CCNNNNNNNGG 1 cut(s) 774
Bse1I ACTGG 1 cut(s) 903
Bse3DI GCAATG 3 cut(s) 361, 653, 716
Bse8I GATNNNNATC 1 cut(s) 301
BseBI CCWGG 1 cut(s) 800
BseCI ATCGAT 1 cut(s) 295
BseGI GGATG 1 cut(s) 709
BseJI GATNNNNATC 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 774
BseMI GCAATG 3 cut(s) 361, 653, 716
BseMII CTCAG 2 cut(s) 671, 769
BseNI ACTGG 1 cut(s) 903
BseRI GAGGAG 1 cut(s) 697
BseXI GCAGC 5 cut(s) 388, 524, 619, 708, 716
Bsh1236I CGCG 2 cut(s) 464, 726
BshNI GGYRCC 2 cut(s) 379, 899
BshVI ATCGAT 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 689
BsiSI CCGG 1 cut(s) 701
BslFI GGGAC 2 cut(s) 62, 750
BslI CCNNNNNNNGG 1 cut(s) 774
BsmAI GTCTC 1 cut(s) 453
BsmBI CGTCTC 1 cut(s) 453
BsmFI GGGAC 2 cut(s) 62, 750
Bsp1286I GDGCHC 1 cut(s) 689
Bsp143I GATC 5 cut(s) 142, 187, 262, 302, 711
BspACI CCGC 1 cut(s) 726
BspCNI CTCAG 2 cut(s) 672, 768
BspDI ATCGAT 1 cut(s) 295
BspFNI CGCG 2 cut(s) 464, 726
BspLI GGNNCC 2 cut(s) 381, 901
BspPI GGATC 3 cut(s) 137, 257, 310
BspT107I GGYRCC 2 cut(s) 379, 899
BsrDI GCAATG 3 cut(s) 361, 653, 716
BsrI ACTGG 1 cut(s) 903
BssMI GATC 5 cut(s) 142, 187, 262, 302, 711
Bst2UI CCWGG 1 cut(s) 800
Bst4CI ACNGT 2 cut(s) 200, 392
Bst6I CTCTTC 2 cut(s) 67, 621
BstAPI GCANNNNNTGC 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 155, 499
BstDEI CTNAG 4 cut(s) 40, 230, 680, 755
BstF5I GGATG 1 cut(s) 709
BstFNI CGCG 2 cut(s) 464, 726
BstHHI GCGC 1 cut(s) 726
BstKTI GATC 5 cut(s) 145, 190, 265, 305, 714
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 5 cut(s) 142, 187, 262, 302, 711
BstMWI GCNNNNNNNGC 2 cut(s) 579, 638
BstNI CCWGG 1 cut(s) 800
BstSCI CCNGG 1 cut(s) 798
BstSFI CTRYAG 1 cut(s) 414
BstUI CGCG 2 cut(s) 464, 726
BstV1I GCAGC 5 cut(s) 388, 524, 619, 708, 716
BstV2I GAAGAC 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 295
BsuTUI ATCGAT 1 cut(s) 295
BtsCI GGATG 1 cut(s) 709
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 4 cut(s) 89, 388, 763, 910
Cac8I GCNNGC 2 cut(s) 155, 499
CfoI GCGC 1 cut(s) 726
ClaI ATCGAT 1 cut(s) 295
CseI GACGC 1 cut(s) 470
Csp6I GTAC 3 cut(s) 380, 577, 670
CviAII CATG 2 cut(s) 123, 150
CviQI GTAC 3 cut(s) 380, 577, 670
DdeI CTNAG 4 cut(s) 40, 230, 680, 755
DpnI GATC 5 cut(s) 144, 189, 264, 304, 713
DpnII GATC 5 cut(s) 142, 187, 262, 302, 711
Eam1104I CTCTTC 2 cut(s) 67, 621
EarI CTCTTC 2 cut(s) 67, 621
Eco57I CTGAAG 4 cut(s) 395, 458, 645, 805
EcoRII CCWGG 1 cut(s) 798
Esp3I CGTCTC 1 cut(s) 453
FaeI CATG 2 cut(s) 126, 153
FaqI GGGAC 2 cut(s) 62, 750
FatI CATG 2 cut(s) 122, 149
FauNDI CATATG 1 cut(s) 421
FbaI TGATCA 1 cut(s) 711
Fnu4HI GCNGC 6 cut(s) 402, 538, 633, 722, 727, 730
FokI GGATG 1 cut(s) 716
Fsp4HI GCNGC 6 cut(s) 402, 538, 633, 722, 727, 730
FspBI CTAG 1 cut(s) 875
GlaI GCGC 1 cut(s) 725
GluI GCNGC 6 cut(s) 402, 538, 633, 722, 727, 730
HapII CCGG 1 cut(s) 701
HgaI GACGC 1 cut(s) 470
HhaI GCGC 1 cut(s) 726
Hin1II CATG 2 cut(s) 126, 153
Hin6I GCGC 1 cut(s) 724
HinP1I GCGC 1 cut(s) 724
HincII GTYRAC 2 cut(s) 649, 781
HindII GTYRAC 2 cut(s) 649, 781
HinfI GANTC 3 cut(s) 86, 236, 676
HpaI GTTAAC 1 cut(s) 649
HpaII CCGG 1 cut(s) 701
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 4 cut(s) 129, 649, 781, 865
Hpy188I TCNGA 7 cut(s) 71, 187, 351, 375, 475, 681, 824
Hpy188III TCNNGA 4 cut(s) 173, 254, 431, 485
Hpy8I GTNNAC 4 cut(s) 129, 649, 781, 865
Hpy99I CGWCG 2 cut(s) 351, 914
HpyAV CCTTC 4 cut(s) 156, 370, 433, 890
HpyCH4III ACNGT 2 cut(s) 200, 392
HpyCH4V TGCA 6 cut(s) 117, 540, 582, 635, 732, 751
HpyF10VI GCNNNNNNNGC 2 cut(s) 579, 638
HpyF3I CTNAG 4 cut(s) 40, 230, 680, 755
Hsp92II CATG 2 cut(s) 126, 153
HspAI GCGC 1 cut(s) 724
KpnI GGTACC 1 cut(s) 383
Ksp22I TGATCA 1 cut(s) 711
KspAI GTTAAC 1 cut(s) 649
Kzo9I GATC 5 cut(s) 142, 187, 262, 302, 711
LmnI GCTCC 3 cut(s) 287, 351, 684
Lsp1109I GCAGC 5 cut(s) 388, 524, 619, 708, 716
LweI GCATC 4 cut(s) 601, 644, 760, 812
MaeI CTAG 1 cut(s) 875
MaeIII GTNAC 3 cut(s) 87, 854, 905
MalI GATC 5 cut(s) 144, 189, 264, 304, 713
MboI GATC 5 cut(s) 142, 187, 262, 302, 711
MboII GAAGA 5 cut(s) 33, 39, 84, 288, 638
MhlI GDGCHC 1 cut(s) 689
MluCI AATT 5 cut(s) 488, 541, 555, 587, 886
MluI ACGCGT 1 cut(s) 462
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 7 cut(s) 28, 39, 393, 507, 622, 675, 836
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 4 cut(s) 269, 648, 885, 922
MslI CAYNNNNRTG 2 cut(s) 424, 756
MspI CCGG 1 cut(s) 701
MspR9I CCNGG 1 cut(s) 800
MvaI CCWGG 1 cut(s) 800
MvnI CGCG 2 cut(s) 464, 726
MwoI GCNNNNNNNGC 2 cut(s) 579, 638
NdeI CATATG 1 cut(s) 421
NdeII GATC 5 cut(s) 142, 187, 262, 302, 711
NlaIII CATG 2 cut(s) 126, 153
NlaIV GGNNCC 2 cut(s) 381, 901
NmeAIII GCCGAG 1 cut(s) 480
NmuCI GTSAC 2 cut(s) 87, 905
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 2 cut(s) 236, 676
PkrI GCNGC 6 cut(s) 403, 539, 634, 723, 728, 731
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 885
Psp6I CCWGG 1 cut(s) 798
PspGI CCWGG 1 cut(s) 798
PspN4I GGNNCC 2 cut(s) 381, 901
RsaI GTAC 3 cut(s) 381, 578, 671
RsaNI GTAC 3 cut(s) 380, 577, 670
RseI CAYNNNNRTG 2 cut(s) 424, 756
SaqAI TTAA 4 cut(s) 269, 648, 885, 922
SatI GCNGC 6 cut(s) 402, 538, 633, 722, 727, 730
Sau3AI GATC 5 cut(s) 142, 187, 262, 302, 711
ScaI AGTACT 2 cut(s) 578, 671
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 800
SduI GDGCHC 1 cut(s) 689
SfaNI GCATC 4 cut(s) 601, 644, 760, 812
SfcI CTRYAG 1 cut(s) 414
SmiMI CAYNNNNRTG 2 cut(s) 424, 756
Sse9I AATT 5 cut(s) 488, 541, 555, 587, 886
SsiI CCGC 1 cut(s) 726
SspMI CTAG 1 cut(s) 875
StyD4I CCNGG 1 cut(s) 798
TaaI ACNGT 2 cut(s) 200, 392
TaqI TCGA 2 cut(s) 99, 295
TasI AATT 5 cut(s) 488, 541, 555, 587, 886
TatI WGTACW 2 cut(s) 576, 669
TauI GCSGC 1 cut(s) 729
TfiI GAWTC 2 cut(s) 236, 676
Tru1I TTAA 4 cut(s) 269, 648, 885, 922
Tru9I TTAA 4 cut(s) 269, 648, 885, 922
TscAI CASTG 4 cut(s) 96, 395, 763, 910
TseFI GTSAC 2 cut(s) 87, 905
TseI GCWGC 5 cut(s) 401, 537, 632, 721, 729
Tsp45I GTSAC 2 cut(s) 87, 905
TspDTI ATGAA 3 cut(s) 138, 207, 909
TspRI CASTG 4 cut(s) 96, 395, 763, 910
VspI ATTAAT 1 cut(s) 885
XapI RAATTY 2 cut(s) 555, 587
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 875
ZrmI AGTACT 2 cut(s) 578, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.