Rroxscaffold_5G00358490

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018594
Physical Location & Seq
Reverse (-)
38554596 .. 38560506
5911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358490.1

Sequence Viewer

Length: 918 bp
ATGGGTAAAGGAAGACGAAGATGGGAGGACTTAGAAAGGGACTGCTTGGTGAATGTTTTCAGAAGAGTGGGTATGGAGTCACTGCTATTCGATGTGCCTTTCGTGTGCAAGTCATGGTTTACAGCAACCCTTGATCCTTCATGCTGGCAATATCTCATTTTTCCAGATATTCCATCTGATCTTGCTGACCGTTTGGACAATATATTTTCTTTTATTTATCTTAGTGATTCCATTGAGCTTTATCCTGATCACTTTGATCCCTTAATAAGAAGATATATAGGAGCATATCGATTTGGATCAAGCCACGTATCTATTACTGCTTTTGTTGAGTTTGTCCTTCGTCGGAGCAATGGAAATGTCGTGTTTCTGAAGGTACCTCGCCACTGTCCAAAAGCTGCTCTAAAGTCTGTAGCACATGCGTGTCCTGACCTGAAGGCTTTGGCTTTGCCGAGAGACGCGTTGAAATCAGATGTAGTTCCTGAATTGGTTGCCAGCTTGACAAGTTTGAGGTCGTTGTTGTTATTAGGAAGCTGCAATTATATTGAGAAAATTTTATTGCCAATCAGCGAGTACTGCAAGAAATTTCATGGTTTATGTTTTTATGATGCTTATATTACTGAAGAGGCCGCATCTGCGATTGTTAACTCATTGCCGAATATCAAGTACTTGATTCTGAGGAGCACTTTGATTAGACCGAATGGCTTAATCACATTGATGCGCGGCTGCAAACAGCTTGTGCTTTTGCATCTCAGTGAGTGTCCCTGTTTTCGGGTCAACGATGAGATACTGAATCTGGCATCTCGTATTAGCGACTTCAGATTTTCCAGTCATTTTGGAGGTTTTCAAGGTTACTATGTGGACGATGAGCTAGGCTATATTAATTTTGATGAAGGCACCAGTGACGACGACTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

305

Amino Acids

34.79

Weight (kDa)

5.83

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018594)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0414691
rosa_laevigata RLG00000008123
rosa_multiflora Rmu_sc0001192.1_g000022 Rmu_sc0010606.1_g000002
rosa_roxburghii Rroxscaffold_5G00358490
rosa_rugosa Rorug04G0129600
rosa_samantha Rh4AG188100 Rh4BG186800 Rh4CG200200 Rh4DG186800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 373
AccB1I GGYRCC 2 cut(s) 373, 893
AccII CGCG 2 cut(s) 458, 720
AciI CCGC 2 cut(s) 627, 720
AclWI GGATC 3 cut(s) 128, 251, 304
AcsI RAATTY 2 cut(s) 549, 581
AcuI CTGAAG 4 cut(s) 389, 452, 639, 799
AfaI GTAC 3 cut(s) 375, 572, 665
AfiI CCNNNNNNNGG 1 cut(s) 768
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 2 cut(s) 463, 845
AleI CACNNNNGTG 1 cut(s) 418
AluBI AGCT 6 cut(s) 238, 395, 495, 531, 733, 868
AluI AGCT 6 cut(s) 238, 395, 495, 531, 733, 868
Alw21I GWGCWC 1 cut(s) 683
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 3 cut(s) 128, 251, 304
AoxI GGCC 1 cut(s) 624
ApeKI GCWGC 3 cut(s) 395, 531, 723
ApoI RAATTY 2 cut(s) 549, 581
AseI ATTAAT 1 cut(s) 879
Asp700I GAANNNNTTC 1 cut(s) 56
Asp718I GGTACC 1 cut(s) 373
AspLEI GCGC 1 cut(s) 720
AsuHPI GGTGA 1 cut(s) 61
BanI GGYRCC 2 cut(s) 373, 893
BbsI GAAGAC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 683
BbvI GCAGC 3 cut(s) 382, 518, 710
BccI CCATC 2 cut(s) 15, 181
BclI TGATCA 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 1 cut(s) 869
BfmI CTRYAG 1 cut(s) 408
BisI GCNGC 5 cut(s) 396, 532, 627, 721, 724
BlsI GCNGC 5 cut(s) 397, 533, 628, 722, 725
BmcAI AGTACT 2 cut(s) 572, 665
BmiI GGNNCC 2 cut(s) 375, 895
BmsI GCATC 5 cut(s) 595, 638, 705, 754, 806
BpiI GAAGAC 1 cut(s) 19
Bsa29I ATCGAT 1 cut(s) 289
BsaAI YACGTR 1 cut(s) 307
BsaBI GATNNNNATC 1 cut(s) 295
Bsc4I CCNNNNNNNGG 1 cut(s) 768
Bse1I ACTGG 2 cut(s) 825, 897
Bse3DI GCAATG 2 cut(s) 355, 647
Bse8I GATNNNNATC 1 cut(s) 295
BseCI ATCGAT 1 cut(s) 289
BseJI GATNNNNATC 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 768
BseMI GCAATG 2 cut(s) 355, 647
BseMII CTCAG 2 cut(s) 665, 763
BseNI ACTGG 2 cut(s) 825, 897
BseRI GAGGAG 1 cut(s) 691
BseXI GCAGC 3 cut(s) 382, 518, 710
Bsh1236I CGCG 2 cut(s) 458, 720
BshFI GGCC 1 cut(s) 626
BshNI GGYRCC 2 cut(s) 373, 893
BshVI ATCGAT 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 683
BslFI GGGAC 2 cut(s) 53, 744
BslI CCNNNNNNNGG 1 cut(s) 768
BsmAI GTCTC 1 cut(s) 447
BsmBI CGTCTC 1 cut(s) 447
BsmFI GGGAC 2 cut(s) 53, 744
BsnI GGCC 1 cut(s) 626
Bsp1286I GDGCHC 1 cut(s) 683
Bsp143I GATC 5 cut(s) 133, 178, 247, 256, 296
BspACI CCGC 2 cut(s) 627, 720
BspANI GGCC 1 cut(s) 626
BspCNI CTCAG 2 cut(s) 666, 762
BspDI ATCGAT 1 cut(s) 289
BspFNI CGCG 2 cut(s) 458, 720
BspLI GGNNCC 2 cut(s) 375, 895
BspPI GGATC 3 cut(s) 128, 251, 304
BspT107I GGYRCC 2 cut(s) 373, 893
BsrDI GCAATG 2 cut(s) 355, 647
BsrI ACTGG 2 cut(s) 825, 897
BssMI GATC 5 cut(s) 133, 178, 247, 256, 296
Bst4CI ACNGT 2 cut(s) 191, 386
Bst6I CTCTTC 2 cut(s) 58, 615
BstBAI YACGTR 1 cut(s) 307
BstC8I GCNNGC 2 cut(s) 146, 493
BstDEI CTNAG 4 cut(s) 31, 221, 674, 749
BstFNI CGCG 2 cut(s) 458, 720
BstHHI GCGC 1 cut(s) 720
BstKTI GATC 5 cut(s) 136, 181, 250, 259, 299
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 5 cut(s) 133, 178, 247, 256, 296
BstMWI GCNNNNNNNGC 2 cut(s) 573, 632
BstNSI RCATGY 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 408
BstUI CGCG 2 cut(s) 458, 720
BstV1I GCAGC 3 cut(s) 382, 518, 710
BstV2I GAAGAC 1 cut(s) 19
Bsu15I ATCGAT 1 cut(s) 289
BsuRI GGCC 1 cut(s) 626
BsuTUI ATCGAT 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 4 cut(s) 80, 382, 757, 904
Cac8I GCNNGC 2 cut(s) 146, 493
CfoI GCGC 1 cut(s) 720
ClaI ATCGAT 1 cut(s) 289
CseI GACGC 1 cut(s) 464
Csp6I GTAC 3 cut(s) 374, 571, 664
CviAII CATG 4 cut(s) 114, 141, 416, 587
CviQI GTAC 3 cut(s) 374, 571, 664
DdeI CTNAG 4 cut(s) 31, 221, 674, 749
DpnI GATC 5 cut(s) 135, 180, 249, 258, 298
DpnII GATC 5 cut(s) 133, 178, 247, 256, 296
Eam1104I CTCTTC 2 cut(s) 58, 615
EarI CTCTTC 2 cut(s) 58, 615
Eco57I CTGAAG 4 cut(s) 389, 452, 639, 799
Esp3I CGTCTC 1 cut(s) 447
FaeI CATG 4 cut(s) 117, 144, 419, 590
FaqI GGGAC 2 cut(s) 53, 744
FatI CATG 4 cut(s) 113, 140, 415, 586
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 5 cut(s) 396, 532, 627, 721, 724
Fsp4HI GCNGC 5 cut(s) 396, 532, 627, 721, 724
FspBI CTAG 1 cut(s) 869
GlaI GCGC 1 cut(s) 719
GluI GCNGC 5 cut(s) 396, 532, 627, 721, 724
HaeIII GGCC 1 cut(s) 626
HgaI GACGC 1 cut(s) 464
HhaI GCGC 1 cut(s) 720
Hin1II CATG 4 cut(s) 117, 144, 419, 590
Hin6I GCGC 1 cut(s) 718
HinP1I GCGC 1 cut(s) 718
HincII GTYRAC 2 cut(s) 643, 775
HindII GTYRAC 2 cut(s) 643, 775
HinfI GANTC 4 cut(s) 77, 227, 670, 790
HpaI GTTAAC 1 cut(s) 643
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 4 cut(s) 120, 643, 775, 859
Hpy188I TCNGA 7 cut(s) 62, 178, 345, 369, 469, 675, 818
Hpy188III TCNNGA 4 cut(s) 164, 245, 425, 479
Hpy8I GTNNAC 4 cut(s) 120, 643, 775, 859
Hpy99I CGWCG 2 cut(s) 345, 908
HpyAV CCTTC 5 cut(s) 147, 347, 364, 427, 884
HpyCH4III ACNGT 2 cut(s) 191, 386
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 5 cut(s) 108, 534, 576, 726, 745
HpyF10VI GCNNNNNNNGC 2 cut(s) 573, 632
HpyF3I CTNAG 4 cut(s) 31, 221, 674, 749
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 4 cut(s) 117, 144, 419, 590
HspAI GCGC 1 cut(s) 718
KpnI GGTACC 1 cut(s) 377
Ksp22I TGATCA 1 cut(s) 247
KspAI GTTAAC 1 cut(s) 643
Kzo9I GATC 5 cut(s) 133, 178, 247, 256, 296
LmnI GCTCC 3 cut(s) 281, 345, 678
Lsp1109I GCAGC 3 cut(s) 382, 518, 710
LweI GCATC 5 cut(s) 595, 638, 705, 754, 806
MaeI CTAG 1 cut(s) 869
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 3 cut(s) 78, 848, 899
MalI GATC 5 cut(s) 135, 180, 249, 258, 298
MboI GATC 5 cut(s) 133, 178, 247, 256, 296
MboII GAAGA 5 cut(s) 24, 30, 75, 282, 632
MhlI GDGCHC 1 cut(s) 683
MluCI AATT 5 cut(s) 482, 535, 549, 581, 880
MluI ACGCGT 1 cut(s) 456
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 6 cut(s) 19, 387, 501, 616, 669, 830
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 4 cut(s) 263, 642, 704, 879
MslI CAYNNNNRTG 3 cut(s) 418, 713, 750
MvnI CGCG 2 cut(s) 458, 720
MwoI GCNNNNNNNGC 2 cut(s) 573, 632
NdeII GATC 5 cut(s) 133, 178, 247, 256, 296
NlaIII CATG 4 cut(s) 117, 144, 419, 590
NlaIV GGNNCC 2 cut(s) 375, 895
NmeAIII GCCGAG 1 cut(s) 474
NmuCI GTSAC 2 cut(s) 78, 899
NspI RCATGY 1 cut(s) 419
OliI CACNNNNGTG 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 3 cut(s) 227, 670, 790
PkrI GCNGC 5 cut(s) 397, 533, 628, 722, 725
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 307
PshBI ATTAAT 1 cut(s) 879
PspN4I GGNNCC 2 cut(s) 375, 895
RsaI GTAC 3 cut(s) 375, 572, 665
RsaNI GTAC 3 cut(s) 374, 571, 664
RseI CAYNNNNRTG 3 cut(s) 418, 713, 750
SaqAI TTAA 4 cut(s) 263, 642, 704, 879
SatI GCNGC 5 cut(s) 396, 532, 627, 721, 724
Sau3AI GATC 5 cut(s) 133, 178, 247, 256, 296
ScaI AGTACT 2 cut(s) 572, 665
SchI GAGTC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 683
SfaNI GCATC 5 cut(s) 595, 638, 705, 754, 806
SfcI CTRYAG 1 cut(s) 408
SmiMI CAYNNNNRTG 3 cut(s) 418, 713, 750
Sse9I AATT 5 cut(s) 482, 535, 549, 581, 880
SsiI CCGC 2 cut(s) 627, 720
SspMI CTAG 1 cut(s) 869
TaaI ACNGT 2 cut(s) 191, 386
TaiI ACGT 1 cut(s) 309
TaqI TCGA 2 cut(s) 90, 289
TaqII GACCGA 1 cut(s) 709
TasI AATT 5 cut(s) 482, 535, 549, 581, 880
TatI WGTACW 2 cut(s) 570, 663
TauI GCSGC 2 cut(s) 629, 723
TfiI GAWTC 3 cut(s) 227, 670, 790
Tru1I TTAA 4 cut(s) 263, 642, 704, 879
Tru9I TTAA 4 cut(s) 263, 642, 704, 879
TscAI CASTG 4 cut(s) 87, 389, 757, 904
TseFI GTSAC 2 cut(s) 78, 899
TseI GCWGC 3 cut(s) 395, 531, 723
Tsp45I GTSAC 2 cut(s) 78, 899
TspDTI ATGAA 3 cut(s) 129, 575, 903
TspRI CASTG 4 cut(s) 87, 389, 757, 904
VspI ATTAAT 1 cut(s) 879
XapI RAATTY 2 cut(s) 549, 581
XceI RCATGY 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 1 cut(s) 869
ZrmI AGTACT 2 cut(s) 572, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.