RLG00000008123

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018594
Physical Location & Seq
Forward (+)
25952069 .. 25953659
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008123

Sequence Viewer

Length: 1029 bp
ATGAATCCAAAGCCAAACAACAAGCATCCCCAAGTGGAATCTGGAAAGCACAGGAGCAAGACTGAACCACTGAGGAAGAAGGAGAAGGAGGAGAAGAAGAAGGGTCACCCGAGCATTATGGGTAAAGGAAGACGAAGATGGGAGGACTTGGAAAGGGACTGCTTGGTGAATGTTTTCAGAAGAGTGGGTATGGAGTCACTGCTATTCGATGTGCCTTTCGTGTGCAAGTCATGGTTTACAGCAACCCTTGATCCTTCATGCTGGCAATATCTCATTTTTCCAGATATTCCATCTTATCTTGCTGACCGTTTGGACAATATATTTTCGTTTATTTATCTTAGTGATTCCACTGAGCATTATCCTGACTTTGATCCCATAATAAGAAGATATATAGGAGCTTATCGATTTGGATCAAGCCACTTATCTATTACTGCTTTTGTTGAGTTTGTCCTTCGTCGGAGCAATGGGAATGTCGTGTTTCTGAAGGTACCTCGCCACTGTCCAAAAGCTGTTCTAAAGTCTGTAGCACATGCGTGTCCTGACCTGAAAGCTTTGGCTTTGCCGAGAGACGCGTTGAAATCAGAAGTAGTTCCTGAATTGGTTGCCAGTTTGACAAGTTTGAGGTCATTGTTGTTATTGGGAAGCTGCAATTATATTGAGAAAATTTTATTACCAATCAGCAAGTACTGCAAGAGATTTCGTGGTTTATGTTTTTATGATGCTTATATTACTGAAGAGGCTGCATCTGCGATTGACTCATTGCCAAAGATCAAGTACTTGATTCTGAGGAGCACTTTGATTAGACCGGATGGTTTGATCACATTGCTGCGCCGCTGCAAACAGCTTGTGCTTTTGCATCTCAGTGAATGCCCCTGTTTTCGGGTCAACGATGAGATACTGAATCTGGCATCTCGTATTAGCGACTTCAGATTTTCCAATCATTTTGGAGGTTTTCAAGGTTACTATGTGGACGATGAGCTAGGCTATATTAATTTTGATGAAGGCACCAGTGACGACGACTATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

343

Amino Acids

39.43

Weight (kDa)

8.75

Isoelectric Point (pI)

56.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018594)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0414691
rosa_laevigata RLG00000008123
rosa_multiflora Rmu_sc0001192.1_g000022 Rmu_sc0010606.1_g000002
rosa_roxburghii Rroxscaffold_5G00358490
rosa_rugosa Rorug04G0129600
rosa_samantha Rh4AG188100 Rh4BG186800 Rh4CG200200 Rh4DG186800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 487
AccB1I GGYRCC 2 cut(s) 487, 1004
AccII CGCG 1 cut(s) 572
AciI CCGC 1 cut(s) 832
AclWI GGATC 3 cut(s) 245, 365, 418
AcsI RAATTY 1 cut(s) 663
AcuI CTGAAG 3 cut(s) 503, 753, 910
AfaI GTAC 3 cut(s) 489, 686, 776
AfiI CCNNNNNNNGG 1 cut(s) 879
AflIII ACRYGT 1 cut(s) 570
AgsI TTSAA 2 cut(s) 577, 956
AleI CACNNNNGTG 1 cut(s) 532
AluBI AGCT 6 cut(s) 398, 509, 551, 645, 844, 979
AluI AGCT 6 cut(s) 398, 509, 551, 645, 844, 979
Alw21I GWGCWC 1 cut(s) 794
Alw26I GTCTC 1 cut(s) 561
AlwI GGATC 3 cut(s) 245, 365, 418
Ama87I CYCGRG 1 cut(s) 109
ApeKI GCWGC 4 cut(s) 645, 740, 826, 834
ApoI RAATTY 1 cut(s) 663
AseI ATTAAT 1 cut(s) 990
Asp700I GAANNNNTTC 2 cut(s) 173, 588
Asp718I GGTACC 1 cut(s) 487
AspLEI GCGC 1 cut(s) 831
AsuHPI GGTGA 2 cut(s) 98, 178
AvaI CYCGRG 1 cut(s) 109
BanI GGYRCC 2 cut(s) 487, 1004
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 794
BbvI GCAGC 4 cut(s) 632, 727, 813, 821
BccI CCATC 3 cut(s) 132, 298, 803
BclI TGATCA 1 cut(s) 816
BcoDI GTCTC 1 cut(s) 561
BfaI CTAG 1 cut(s) 980
BfmI CTRYAG 1 cut(s) 522
BisI GCNGC 5 cut(s) 646, 741, 827, 832, 835
BlsI GCNGC 5 cut(s) 647, 742, 828, 833, 836
BmcAI AGTACT 2 cut(s) 686, 776
BmeT110I CYCGRG 1 cut(s) 109
BmiI GGNNCC 2 cut(s) 489, 1006
BmsI GCATC 5 cut(s) 34, 709, 752, 865, 917
BpiI GAAGAC 1 cut(s) 136
Bsa29I ATCGAT 1 cut(s) 403
BsaBI GATNNNNATC 1 cut(s) 409
BsaWI WCCGGW 1 cut(s) 805
Bsc4I CCNNNNNNNGG 1 cut(s) 879
Bse1I ACTGG 2 cut(s) 606, 1008
Bse3DI GCAATG 3 cut(s) 469, 758, 821
Bse8I GATNNNNATC 1 cut(s) 409
BseCI ATCGAT 1 cut(s) 403
BseGI GGATG 2 cut(s) 25, 814
BseJI GATNNNNATC 1 cut(s) 409
BseLI CCNNNNNNNGG 1 cut(s) 879
BseMI GCAATG 3 cut(s) 469, 758, 821
BseMII CTCAG 4 cut(s) 62, 342, 776, 874
BseNI ACTGG 2 cut(s) 606, 1008
BseRI GAGGAG 2 cut(s) 104, 802
BseXI GCAGC 4 cut(s) 632, 727, 813, 821
Bsh1236I CGCG 1 cut(s) 572
BshNI GGYRCC 2 cut(s) 487, 1004
BshVI ATCGAT 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 794
BsiHKCI CYCGRG 1 cut(s) 109
BsiSI CCGG 1 cut(s) 806
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 879
BsmAI GTCTC 1 cut(s) 561
BsmBI CGTCTC 1 cut(s) 561
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 872
BsoBI CYCGRG 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 794
Bsp143I GATC 5 cut(s) 250, 370, 410, 768, 816
BspACI CCGC 1 cut(s) 832
BspCNI CTCAG 4 cut(s) 63, 343, 777, 873
BspDI ATCGAT 1 cut(s) 403
BspFNI CGCG 1 cut(s) 572
BspLI GGNNCC 2 cut(s) 489, 1006
BspPI GGATC 3 cut(s) 245, 365, 418
BspT107I GGYRCC 2 cut(s) 487, 1004
BsrDI GCAATG 3 cut(s) 469, 758, 821
BsrI ACTGG 2 cut(s) 606, 1008
BssMI GATC 5 cut(s) 250, 370, 410, 768, 816
Bst4CI ACNGT 2 cut(s) 308, 500
Bst6I CTCTTC 2 cut(s) 175, 729
BstAPI GCANNNNNTGC 1 cut(s) 687
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 5 cut(s) 71, 338, 351, 785, 860
BstEII GGTNACC 1 cut(s) 104
BstF5I GGATG 2 cut(s) 25, 814
BstFNI CGCG 1 cut(s) 572
BstHHI GCGC 1 cut(s) 831
BstKTI GATC 5 cut(s) 253, 373, 413, 771, 819
BstMAI GTCTC 1 cut(s) 561
BstMBI GATC 5 cut(s) 250, 370, 410, 768, 816
BstMWI GCNNNNNNNGC 2 cut(s) 687, 746
BstNSI RCATGY 1 cut(s) 533
BstPI GGTNACC 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 522
BstUI CGCG 1 cut(s) 572
BstV1I GCAGC 4 cut(s) 632, 727, 813, 821
BstV2I GAAGAC 1 cut(s) 136
Bsu15I ATCGAT 1 cut(s) 403
BsuTUI ATCGAT 1 cut(s) 403
BtsCI GGATG 2 cut(s) 25, 814
BtsI GCAGTG 1 cut(s) 197
BtsIMutI CAGTG 6 cut(s) 68, 197, 348, 496, 868, 1015
Cac8I GCNNGC 1 cut(s) 263
CfoI GCGC 1 cut(s) 831
ClaI ATCGAT 1 cut(s) 403
CseI GACGC 1 cut(s) 578
Csp6I GTAC 3 cut(s) 488, 685, 775
CviAII CATG 3 cut(s) 231, 258, 530
CviQI GTAC 3 cut(s) 488, 685, 775
DdeI CTNAG 5 cut(s) 71, 338, 351, 785, 860
DpnI GATC 5 cut(s) 252, 372, 412, 770, 818
DpnII GATC 5 cut(s) 250, 370, 410, 768, 816
Eam1104I CTCTTC 2 cut(s) 175, 729
EarI CTCTTC 2 cut(s) 175, 729
Eco57I CTGAAG 3 cut(s) 503, 753, 910
Eco88I CYCGRG 1 cut(s) 109
Eco91I GGTNACC 1 cut(s) 104
EcoO65I GGTNACC 1 cut(s) 104
Esp3I CGTCTC 1 cut(s) 561
FaeI CATG 3 cut(s) 234, 261, 533
FaqI GGGAC 1 cut(s) 170
FatI CATG 3 cut(s) 230, 257, 529
FbaI TGATCA 1 cut(s) 816
Fnu4HI GCNGC 5 cut(s) 646, 741, 827, 832, 835
FokI GGATG 2 cut(s) 12, 821
Fsp4HI GCNGC 5 cut(s) 646, 741, 827, 832, 835
FspBI CTAG 1 cut(s) 980
GlaI GCGC 1 cut(s) 830
GluI GCNGC 5 cut(s) 646, 741, 827, 832, 835
HapII CCGG 1 cut(s) 806
HgaI GACGC 1 cut(s) 578
HhaI GCGC 1 cut(s) 831
Hin1II CATG 3 cut(s) 234, 261, 533
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HincII GTYRAC 1 cut(s) 886
HindII GTYRAC 1 cut(s) 886
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 7 cut(s) 4, 38, 194, 344, 755, 781, 901
HpaII CCGG 1 cut(s) 806
HphI GGTGA 2 cut(s) 98, 178
Hpy166II GTNNAC 3 cut(s) 237, 886, 970
Hpy188I TCNGA 6 cut(s) 179, 459, 483, 583, 786, 929
Hpy188III TCNNGA 5 cut(s) 42, 281, 362, 539, 593
Hpy8I GTNNAC 3 cut(s) 237, 886, 970
Hpy99I CGWCG 2 cut(s) 459, 1019
HpyAV CCTTC 7 cut(s) 73, 79, 94, 264, 461, 478, 995
HpyCH4III ACNGT 2 cut(s) 308, 500
HpyCH4V TGCA 6 cut(s) 225, 648, 690, 743, 837, 856
HpyF10VI GCNNNNNNNGC 2 cut(s) 687, 746
HpyF3I CTNAG 5 cut(s) 71, 338, 351, 785, 860
Hsp92II CATG 3 cut(s) 234, 261, 533
HspAI GCGC 1 cut(s) 829
KpnI GGTACC 1 cut(s) 491
Ksp22I TGATCA 1 cut(s) 816
Kzo9I GATC 5 cut(s) 250, 370, 410, 768, 816
LmnI GCTCC 4 cut(s) 54, 395, 459, 789
Lsp1109I GCAGC 4 cut(s) 632, 727, 813, 821
LweI GCATC 5 cut(s) 34, 709, 752, 865, 917
MaeI CTAG 1 cut(s) 980
MaeIII GTNAC 4 cut(s) 104, 195, 959, 1010
MalI GATC 5 cut(s) 252, 372, 412, 770, 818
MboI GATC 5 cut(s) 250, 370, 410, 768, 816
MboII GAAGA 8 cut(s) 88, 106, 109, 141, 147, 192, 396, 746
MhlI GDGCHC 1 cut(s) 794
MluCI AATT 4 cut(s) 596, 649, 663, 991
MluI ACGCGT 1 cut(s) 570
MlyI GAGTC 2 cut(s) 203, 749
MmeI TCCRAC 1 cut(s) 437
MnlI CCTC 8 cut(s) 66, 82, 136, 501, 615, 730, 780, 941
MroXI GAANNNNTTC 2 cut(s) 173, 588
MseI TTAA 2 cut(s) 990, 1027
MslI CAYNNNNRTG 2 cut(s) 532, 861
MspA1I CMGCKG 1 cut(s) 834
MspI CCGG 1 cut(s) 806
Mva1269I GAATGC 1 cut(s) 872
MvnI CGCG 1 cut(s) 572
MwoI GCNNNNNNNGC 2 cut(s) 687, 746
NdeII GATC 5 cut(s) 250, 370, 410, 768, 816
NlaIII CATG 3 cut(s) 234, 261, 533
NlaIV GGNNCC 2 cut(s) 489, 1006
NmeAIII GCCGAG 1 cut(s) 588
NmuCI GTSAC 3 cut(s) 104, 195, 1010
NspI RCATGY 1 cut(s) 533
OliI CACNNNNGTG 1 cut(s) 532
PctI GAATGC 1 cut(s) 872
PdmI GAANNNNTTC 2 cut(s) 173, 588
PfeI GAWTC 5 cut(s) 4, 38, 344, 781, 901
PkrI GCNGC 5 cut(s) 647, 742, 828, 833, 836
PleI GAGTC 2 cut(s) 202, 749
PpsI GAGTC 2 cut(s) 202, 749
PshBI ATTAAT 1 cut(s) 990
PspEI GGTNACC 1 cut(s) 104
PspN4I GGNNCC 2 cut(s) 489, 1006
RsaI GTAC 3 cut(s) 489, 686, 776
RsaNI GTAC 3 cut(s) 488, 685, 775
RseI CAYNNNNRTG 2 cut(s) 532, 861
SaqAI TTAA 2 cut(s) 990, 1027
SatI GCNGC 5 cut(s) 646, 741, 827, 832, 835
Sau3AI GATC 5 cut(s) 250, 370, 410, 768, 816
ScaI AGTACT 2 cut(s) 686, 776
SchI GAGTC 2 cut(s) 203, 749
SduI GDGCHC 1 cut(s) 794
SfaNI GCATC 5 cut(s) 34, 709, 752, 865, 917
SfcI CTRYAG 1 cut(s) 522
SmiMI CAYNNNNRTG 2 cut(s) 532, 861
Sse9I AATT 4 cut(s) 596, 649, 663, 991
SsiI CCGC 1 cut(s) 832
SspMI CTAG 1 cut(s) 980
TaaI ACNGT 2 cut(s) 308, 500
TaqI TCGA 2 cut(s) 207, 403
TasI AATT 4 cut(s) 596, 649, 663, 991
TatI WGTACW 2 cut(s) 684, 774
TauI GCSGC 1 cut(s) 834
TfiI GAWTC 5 cut(s) 4, 38, 344, 781, 901
Tru1I TTAA 2 cut(s) 990, 1027
Tru9I TTAA 2 cut(s) 990, 1027
TscAI CASTG 6 cut(s) 75, 204, 355, 503, 868, 1015
TseFI GTSAC 3 cut(s) 104, 195, 1010
TseI GCWGC 4 cut(s) 645, 740, 826, 834
Tsp45I GTSAC 3 cut(s) 104, 195, 1010
TspDTI ATGAA 3 cut(s) 17, 246, 1014
TspRI CASTG 6 cut(s) 75, 204, 355, 503, 868, 1015
VspI ATTAAT 1 cut(s) 990
XapI RAATTY 1 cut(s) 663
XceI RCATGY 1 cut(s) 533
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
XmnI GAANNNNTTC 2 cut(s) 173, 588
XspI CTAG 1 cut(s) 980
ZrmI AGTACT 2 cut(s) 686, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.