Rh4AG188100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0018594
Physical Location & Seq
Reverse (-)
46737137 .. 46739275
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG188100.1

Sequence Viewer

Length: 915 bp
ATGGGTAAAGGAAGACGAAGATGGGAGGACTTAGAAAGGGACTGCTTGGTGAATGTTTTCAGAAGAGTGGGTATGGAGTCACTGCTATTCGATGTGCCTTTCGTGTGCAAGTCATGGTTTACAGCAACCCTTGATCCTTCATGCTGGCAATATCTCATTTTTCCAGATATTCCATCTGATCTTGCTGACCGTTTGGACAATATATTTTCGTTTATTTATCTTAGTGAGTCCATTGAGCTTTATCCTGACTTTGATCCCTTAATAAGAAGATATATAGGAGCTTATCGATTTGGATCAAGCCACTTATCTATTACTGCTTTTGTTGAGTTTGTCTTTCGTCGGAGCAATGGGAATGTCGTGTTTCTGAAGGTACCTCGCCACTGTCCAAAAGCTGCTCTAAAGTCTGTAGCACATGCGTGTCCTGACCTGAAGGCTTTGGCTTTGCCGAGAGACGCGTTGAAATCAGATGTAGTTCCTGAATTGGTTGCCAGCTTGACAAGTTTGAGGTCGTTATTGTTATTAGGAAGCTGCAATTATATTGAGAAAATTTTATTACCAATCAGCAAGTACTGCAAGAAATTTCGTGGTTTATGTTTTTATGATGCTTATATTACTGAAGAGGCTGCATCTGCGATTGTTAACTCATTGCCGAATATCAAGTACTTGATTCTGAGGGGCACTTTGATTAGACCGAATGGCTTGATCACACTGCTGCGCGGCTGCAAACAGCTTGTGCTTTTGCATCTCAGTGAGTGTCCCTGTTTTCGGGTCAACGATGAGATACTGAATTTGGCATCTCATATTAGCGACTTCAGATTTTCCAATCATTTTGGAGGTTTTCAAGGTTACTATGTGGACGATGAGCTAGGCTATATTAATTTTGATGAAGGCACCAGTGACGACGACTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

304

Amino Acids

34.69

Weight (kDa)

6.1

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018594)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0414691
rosa_laevigata RLG00000008123
rosa_multiflora Rmu_sc0001192.1_g000022 Rmu_sc0010606.1_g000002
rosa_roxburghii Rroxscaffold_5G00358490
rosa_rugosa Rorug04G0129600
rosa_samantha Rh4AG188100 Rh4BG186800 Rh4CG200200 Rh4DG186800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 370
AccB1I GGYRCC 2 cut(s) 370, 890
AccII CGCG 2 cut(s) 455, 717
AciI CCGC 1 cut(s) 717
AclWI GGATC 3 cut(s) 128, 248, 301
AcsI RAATTY 3 cut(s) 546, 578, 787
AcuI CTGAAG 4 cut(s) 386, 449, 636, 796
AfaI GTAC 3 cut(s) 372, 569, 662
AfiI CCNNNNNNNGG 1 cut(s) 765
AflIII ACRYGT 1 cut(s) 453
AgsI TTSAA 2 cut(s) 460, 842
AleI CACNNNNGTG 1 cut(s) 415
AluBI AGCT 7 cut(s) 238, 281, 392, 492, 528, 730, 865
AluI AGCT 7 cut(s) 238, 281, 392, 492, 528, 730, 865
Alw26I GTCTC 1 cut(s) 444
AlwI GGATC 3 cut(s) 128, 248, 301
ApeKI GCWGC 5 cut(s) 392, 528, 623, 712, 720
ApoI RAATTY 3 cut(s) 546, 578, 787
AseI ATTAAT 1 cut(s) 876
Asp700I GAANNNNTTC 1 cut(s) 56
Asp718I GGTACC 1 cut(s) 370
AspLEI GCGC 1 cut(s) 717
AsuHPI GGTGA 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 680
BanI GGYRCC 2 cut(s) 370, 890
BbsI GAAGAC 1 cut(s) 19
BbvI GCAGC 5 cut(s) 379, 515, 610, 699, 707
BccI CCATC 2 cut(s) 15, 181
BclI TGATCA 1 cut(s) 702
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 1 cut(s) 866
BfmI CTRYAG 1 cut(s) 405
BisI GCNGC 6 cut(s) 393, 529, 624, 713, 718, 721
BlsI GCNGC 6 cut(s) 394, 530, 625, 714, 719, 722
BmcAI AGTACT 2 cut(s) 569, 662
BmiI GGNNCC 2 cut(s) 372, 892
BmsI GCATC 4 cut(s) 592, 635, 751, 803
BpiI GAAGAC 1 cut(s) 19
Bsa29I ATCGAT 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 292
Bsc4I CCNNNNNNNGG 1 cut(s) 765
Bse1I ACTGG 1 cut(s) 894
Bse3DI GCAATG 2 cut(s) 352, 644
Bse8I GATNNNNATC 1 cut(s) 292
BseCI ATCGAT 1 cut(s) 286
BseJI GATNNNNATC 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 765
BseMI GCAATG 2 cut(s) 352, 644
BseMII CTCAG 2 cut(s) 662, 760
BseNI ACTGG 1 cut(s) 894
BseSI GKGCMC 1 cut(s) 680
BseXI GCAGC 5 cut(s) 379, 515, 610, 699, 707
Bsh1236I CGCG 2 cut(s) 455, 717
BshNI GGYRCC 2 cut(s) 370, 890
BshVI ATCGAT 1 cut(s) 286
BslFI GGGAC 2 cut(s) 53, 741
BslI CCNNNNNNNGG 1 cut(s) 765
BsmAI GTCTC 1 cut(s) 444
BsmBI CGTCTC 1 cut(s) 444
BsmFI GGGAC 2 cut(s) 53, 741
Bsp1286I GDGCHC 1 cut(s) 680
Bsp143I GATC 5 cut(s) 133, 178, 253, 293, 702
BspACI CCGC 1 cut(s) 717
BspCNI CTCAG 2 cut(s) 663, 759
BspDI ATCGAT 1 cut(s) 286
BspFNI CGCG 2 cut(s) 455, 717
BspLI GGNNCC 2 cut(s) 372, 892
BspPI GGATC 3 cut(s) 128, 248, 301
BspT107I GGYRCC 2 cut(s) 370, 890
BsrDI GCAATG 2 cut(s) 352, 644
BsrI ACTGG 1 cut(s) 894
BssMI GATC 5 cut(s) 133, 178, 253, 293, 702
Bst4CI ACNGT 2 cut(s) 191, 383
Bst6I CTCTTC 2 cut(s) 58, 612
BstAPI GCANNNNNTGC 1 cut(s) 570
BstC8I GCNNGC 2 cut(s) 146, 490
BstDEI CTNAG 4 cut(s) 31, 221, 671, 746
BstFNI CGCG 2 cut(s) 455, 717
BstHHI GCGC 1 cut(s) 717
BstKTI GATC 5 cut(s) 136, 181, 256, 296, 705
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 5 cut(s) 133, 178, 253, 293, 702
BstMWI GCNNNNNNNGC 2 cut(s) 570, 629
BstNSI RCATGY 1 cut(s) 416
BstSFI CTRYAG 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 680
BstUI CGCG 2 cut(s) 455, 717
BstV1I GCAGC 5 cut(s) 379, 515, 610, 699, 707
BstV2I GAAGAC 1 cut(s) 19
Bsu15I ATCGAT 1 cut(s) 286
BsuTUI ATCGAT 1 cut(s) 286
BtsI GCAGTG 2 cut(s) 80, 707
BtsIMutI CAGTG 5 cut(s) 80, 379, 707, 754, 901
Cac8I GCNNGC 2 cut(s) 146, 490
CfoI GCGC 1 cut(s) 717
ClaI ATCGAT 1 cut(s) 286
CseI GACGC 1 cut(s) 461
Csp6I GTAC 3 cut(s) 371, 568, 661
CviAII CATG 3 cut(s) 114, 141, 413
CviQI GTAC 3 cut(s) 371, 568, 661
DdeI CTNAG 4 cut(s) 31, 221, 671, 746
DpnI GATC 5 cut(s) 135, 180, 255, 295, 704
DpnII GATC 5 cut(s) 133, 178, 253, 293, 702
Eam1104I CTCTTC 2 cut(s) 58, 612
EarI CTCTTC 2 cut(s) 58, 612
Eco57I CTGAAG 4 cut(s) 386, 449, 636, 796
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 3 cut(s) 117, 144, 416
FaqI GGGAC 2 cut(s) 53, 741
FatI CATG 3 cut(s) 113, 140, 412
FbaI TGATCA 1 cut(s) 702
Fnu4HI GCNGC 6 cut(s) 393, 529, 624, 713, 718, 721
Fsp4HI GCNGC 6 cut(s) 393, 529, 624, 713, 718, 721
FspBI CTAG 1 cut(s) 866
GlaI GCGC 1 cut(s) 716
GluI GCNGC 6 cut(s) 393, 529, 624, 713, 718, 721
HgaI GACGC 1 cut(s) 461
HhaI GCGC 1 cut(s) 717
Hin1II CATG 3 cut(s) 117, 144, 416
Hin6I GCGC 1 cut(s) 715
HinP1I GCGC 1 cut(s) 715
HincII GTYRAC 2 cut(s) 640, 772
HindII GTYRAC 2 cut(s) 640, 772
HinfI GANTC 3 cut(s) 77, 227, 667
HpaI GTTAAC 1 cut(s) 640
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 4 cut(s) 120, 640, 772, 856
Hpy188I TCNGA 7 cut(s) 62, 178, 342, 366, 466, 672, 815
Hpy188III TCNNGA 4 cut(s) 164, 245, 422, 476
Hpy8I GTNNAC 4 cut(s) 120, 640, 772, 856
Hpy99I CGWCG 2 cut(s) 342, 905
HpyAV CCTTC 4 cut(s) 147, 361, 424, 881
HpyCH4III ACNGT 2 cut(s) 191, 383
HpyCH4V TGCA 6 cut(s) 108, 531, 573, 626, 723, 742
HpyF10VI GCNNNNNNNGC 2 cut(s) 570, 629
HpyF3I CTNAG 4 cut(s) 31, 221, 671, 746
Hsp92II CATG 3 cut(s) 117, 144, 416
HspAI GCGC 1 cut(s) 715
KpnI GGTACC 1 cut(s) 374
Ksp22I TGATCA 1 cut(s) 702
KspAI GTTAAC 1 cut(s) 640
Kzo9I GATC 5 cut(s) 133, 178, 253, 293, 702
LmnI GCTCC 2 cut(s) 278, 342
LpnPI CCDG 9 cut(s) 130, 177, 258, 435, 440, 489, 502, 772, 907
Lsp1109I GCAGC 5 cut(s) 379, 515, 610, 699, 707
LweI GCATC 4 cut(s) 592, 635, 751, 803
MaeI CTAG 1 cut(s) 866
MaeIII GTNAC 3 cut(s) 78, 845, 896
MalI GATC 5 cut(s) 135, 180, 255, 295, 704
MboI GATC 5 cut(s) 133, 178, 253, 293, 702
MboII GAAGA 5 cut(s) 24, 30, 75, 279, 629
MhlI GDGCHC 1 cut(s) 680
MluCI AATT 6 cut(s) 479, 532, 546, 578, 787, 877
MluI ACGCGT 1 cut(s) 453
MlyI GAGTC 2 cut(s) 86, 236
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 6 cut(s) 19, 384, 498, 613, 666, 827
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 4 cut(s) 260, 639, 876, 913
MslI CAYNNNNRTG 2 cut(s) 415, 747
MvnI CGCG 2 cut(s) 455, 717
MwoI GCNNNNNNNGC 2 cut(s) 570, 629
NdeII GATC 5 cut(s) 133, 178, 253, 293, 702
NlaIII CATG 3 cut(s) 117, 144, 416
NlaIV GGNNCC 2 cut(s) 372, 892
NmeAIII GCCGAG 1 cut(s) 471
NmuCI GTSAC 2 cut(s) 78, 896
NspI RCATGY 1 cut(s) 416
OliI CACNNNNGTG 1 cut(s) 415
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 667
PkrI GCNGC 6 cut(s) 394, 530, 625, 714, 719, 722
PleI GAGTC 2 cut(s) 85, 235
PpsI GAGTC 2 cut(s) 85, 235
PshBI ATTAAT 1 cut(s) 876
PspN4I GGNNCC 2 cut(s) 372, 892
RsaI GTAC 3 cut(s) 372, 569, 662
RsaNI GTAC 3 cut(s) 371, 568, 661
RseI CAYNNNNRTG 2 cut(s) 415, 747
SaqAI TTAA 4 cut(s) 260, 639, 876, 913
SatI GCNGC 6 cut(s) 393, 529, 624, 713, 718, 721
Sau3AI GATC 5 cut(s) 133, 178, 253, 293, 702
ScaI AGTACT 2 cut(s) 569, 662
SchI GAGTC 2 cut(s) 86, 236
SduI GDGCHC 1 cut(s) 680
SfaNI GCATC 4 cut(s) 592, 635, 751, 803
SfcI CTRYAG 1 cut(s) 405
SmiMI CAYNNNNRTG 2 cut(s) 415, 747
Sse9I AATT 6 cut(s) 479, 532, 546, 578, 787, 877
SsiI CCGC 1 cut(s) 717
SspMI CTAG 1 cut(s) 866
TaaI ACNGT 2 cut(s) 191, 383
TaqI TCGA 2 cut(s) 90, 286
TaqII GACCGA 1 cut(s) 706
TasI AATT 6 cut(s) 479, 532, 546, 578, 787, 877
TatI WGTACW 2 cut(s) 567, 660
TauI GCSGC 1 cut(s) 720
TfiI GAWTC 1 cut(s) 667
Tru1I TTAA 4 cut(s) 260, 639, 876, 913
Tru9I TTAA 4 cut(s) 260, 639, 876, 913
TscAI CASTG 5 cut(s) 87, 386, 714, 754, 901
TseFI GTSAC 2 cut(s) 78, 896
TseI GCWGC 5 cut(s) 392, 528, 623, 712, 720
Tsp45I GTSAC 2 cut(s) 78, 896
TspDTI ATGAA 2 cut(s) 129, 900
TspRI CASTG 5 cut(s) 87, 386, 714, 754, 901
VspI ATTAAT 1 cut(s) 876
XapI RAATTY 3 cut(s) 546, 578, 787
XceI RCATGY 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 1 cut(s) 866
ZrmI AGTACT 2 cut(s) 569, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.