RchiOBHm_Chr4g0443271

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0019230
Physical Location & Seq
Forward (+)
64472074 .. 64475033
2960 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 528 bp
ATGTTTTTGCAGAAGAATGACATGGTGGTACCACAATGGTTGAAAATTATGTACAGCACAGTATTCTTCGAGACTTGCATTACACACTCGGATGCAAAAAAGAACGATATAGATCATTTCTGCATTGATTGTCTTCAACCTATATGTCTGAACTGTCTTGCCCAGCATATGTTTCACAAGCACATTAAGATTCAGAGATATATTTACAGTGATGTGATTAATTGTCGAGACTTATGCAAGCTCTTCAACTGTTCTGGCATACAGACATATCAGACAAACAAAGCCAAAGTGGTATTCTTGAAGCAAAGGCATCAACCACAACAGCAAGAGCAACAGCGACAACATTATAATAAATCGGGGAGTATATGTGTACCACCTGCCACAAGAATTTGCAAGACAATTCCCTCTATTGCAGTGTTGCCTGCAAGGTTTCAGCAATACTTGGAAACGAATGCCAGAGAAAAACTATATGTGGTGGTCATAGTTTTGAAGATAATAATGAGAAAAAGGGAGGAAAAAAAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

175

Amino Acids

20.72

Weight (kDa)

9.4

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 66 - 123 1.5e-15 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g33741
rosa_chinensis RchiOBHm_Chr4g0443271
rosa_roxburghii Rroxscaffold_5G00383860
rosa_rugosa Rorug04G0345200.1
rosa_samantha Rh4AG400100 Rh4CG427100 Rh4DG407000
rosa_wichuraiana Rw4G034510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AarI CACCTGC 1 cut(s) 385
Acc36I ACCTGC 1 cut(s) 385
Acc65I GGTACC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 28
AcsI RAATTY 1 cut(s) 387
AfaI GTAC 3 cut(s) 30, 53, 372
AgsI TTSAA 5 cut(s) 43, 137, 247, 301, 490
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw26I GTCTC 2 cut(s) 65, 222
ApoI RAATTY 1 cut(s) 387
AseI ATTAAT 1 cut(s) 219
Asp718I GGTACC 1 cut(s) 28
BanI GGYRCC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 125
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BcoDI GTCTC 2 cut(s) 65, 222
BfaI CTAG 1 cut(s) 526
BfuAI ACCTGC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 30
BmsI GCATC 2 cut(s) 82, 319
BpiI GAAGAC 1 cut(s) 125
BsaBI GATNNNNATC 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bse8I GATNNNNATC 1 cut(s) 111
BseGI GGATG 1 cut(s) 97
BseJI GATNNNNATC 1 cut(s) 111
BseYI CCCAGC 1 cut(s) 162
BshNI GGYRCC 1 cut(s) 28
BsmAI GTCTC 2 cut(s) 65, 222
BsmI GAATGC 1 cut(s) 457
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 385
BspQI GCTCTTC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 28
BsrGI TGTACA 1 cut(s) 51
BssMI GATC 1 cut(s) 112
Bst4CI ACNGT 4 cut(s) 61, 155, 209, 251
Bst6I CTCTTC 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 239, 423
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 2 cut(s) 65, 222
BstMBI GATC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 2 cut(s) 214, 420
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 2 cut(s) 239, 423
Csp6I GTAC 3 cut(s) 29, 52, 371
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviAII CATG 1 cut(s) 22
CviJI RGCY 2 cut(s) 241, 284
CviKI_1 RGCY 2 cut(s) 241, 284
CviQI GTAC 3 cut(s) 29, 52, 371
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
FaeI CATG 1 cut(s) 25
FatI CATG 1 cut(s) 21
FauNDI CATATG 1 cut(s) 168
FokI GGATG 1 cut(s) 104
FspBI CTAG 1 cut(s) 526
GsaI CCCAGC 1 cut(s) 166
Hin1II CATG 1 cut(s) 25
HinfI GANTC 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 4 cut(s) 91, 150, 195, 273
Hpy188III TCNNGA 3 cut(s) 70, 227, 298
Hpy8I GTNNAC 1 cut(s) 371
HpyCH4III ACNGT 4 cut(s) 61, 155, 209, 251
HpyCH4V TGCA 8 cut(s) 10, 78, 95, 123, 237, 393, 413, 425
Hsp92II CATG 1 cut(s) 25
KpnI GGTACC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 112
LguI GCTCTTC 1 cut(s) 248
LpnPI CCDG 5 cut(s) 176, 240, 390, 435, 469
LweI GCATC 2 cut(s) 82, 319
MaeI CTAG 1 cut(s) 526
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 5 cut(s) 25, 58, 125, 235, 502
MluCI AATT 4 cut(s) 45, 220, 387, 399
MnlI CCTC 2 cut(s) 415, 505
MseI TTAA 2 cut(s) 186, 219
MslI CAYNNNNRTG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 457
NdeI CATATG 1 cut(s) 168
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 30
PaqCI CACCTGC 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 248
PctI GAATGC 1 cut(s) 457
PfeI GAWTC 1 cut(s) 190
PshBI ATTAAT 1 cut(s) 219
PsiI TTATAA 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 30
RsaI GTAC 3 cut(s) 30, 53, 372
RsaNI GTAC 3 cut(s) 29, 52, 371
RseI CAYNNNNRTG 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 2 cut(s) 186, 219
Sau3AI GATC 1 cut(s) 112
SetI ASST 4 cut(s) 142, 243, 379, 431
SfaNI GCATC 2 cut(s) 82, 319
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 4 cut(s) 45, 220, 387, 399
SspMI CTAG 1 cut(s) 526
TaaI ACNGT 4 cut(s) 61, 155, 209, 251
TaqI TCGA 2 cut(s) 69, 226
TasI AATT 4 cut(s) 45, 220, 387, 399
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 2 cut(s) 186, 219
Tru9I TTAA 2 cut(s) 186, 219
TscAI CASTG 2 cut(s) 214, 420
TspRI CASTG 2 cut(s) 214, 420
VspI ATTAAT 1 cut(s) 219
XapI RAATTY 1 cut(s) 387
XspI CTAG 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.