RchiOBHm_Chr4g0444981

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018189
Physical Location & Seq
Reverse (-)
65595812 .. 65597002
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 831 bp
ATGCAGACTAAAATCTGTAGAATCGAATCATCTGCAGCAGAAACAATAGCCAACATAGAAGATCTCCTCACACAGATCCTCTTACGATTGCCGGCTCGATCTCCGATCCGTTTCCAATGTGTCTCCAAGCATTGGCTCTCTCTTATCTCCGACCCCAAATTCCGTCTACTCCACAACCTCCAAAACCCAAACCCCAAAATCTCTGGTTTGTTCCCTGACACTACAATCCCTGCAATGCCCATGATCATCATCCCTCTAGGTAAAGCAATCCCATCTCGGATTAACCGGCCGAAAGCTCTGCCAGTCCGATGTTTCGATGATGCTTGTTGCCGTATCAACATCCTTCGGTCCTGCAACGGCCTCTTGCTCTGCCAGTTACACGCGCGGTCTACTGCATGCAGCGGAGCGCTTCACTGGATCAGGGGTAAACGCTCCGTTGACAATACCAAGTTGGTACACTTCAATAATCTAGATGAAGAGCGTTTGGGATCAGTCGCCGCTGCGAGTTACCATCACCTTAGTAAGGGGGAAATCGTTTATAGATATTTTGGGGAGTCCGGCGGTCATCTGCATCTGATTGATACATACGAGTACTCGGGTAATGCTTTTGATGTGATGGAGATGGGGAGGGACTACTCCGGCTGGTTTGTCAAGTACCACAAAGGACATCCAGCTGATGAGGAAGTGTTGATGTTGCATGTTCCTGGTAAAGTTGTCTCTTATAATCTTAGGAGTAAGACTGTCACGACATCTTCTGAGTTAACCAGTAGAGATTACTTACTAATTAGGGATTGGTTACATCGAGAGCTTAGCTTGTGTGTGAGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

276

Amino Acids

31.3

Weight (kDa)

9.05

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018189)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0444981
rosa_laevigata RLG00000005780
rosa_multiflora Rmu_sc0011561.1_g000009
rosa_roxburghii Rroxscaffold_5G00385490
rosa_rugosa Rorug04G0357000
rosa_samantha Rh4AG418800 Rh4AG418900 Rh4BG430500 Rh4BG430600 Rh4DG426500 Rh5CG312200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 723
AccB7I CCANNNNNTGG 1 cut(s) 132
AccI GTMKAC 2 cut(s) 166, 389
AccII CGCG 2 cut(s) 383, 385
AciI CCGC 4 cut(s) 385, 402, 498, 561
AclWI GGATC 4 cut(s) 70, 100, 425, 496
AcoI YGGCCR 1 cut(s) 287
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 3 cut(s) 456, 593, 656
AfeI AGCGCT 1 cut(s) 408
AfiI CCNNNNNNNGG 2 cut(s) 132, 523
AgsI TTSAA 1 cut(s) 463
AjnI CCWGG 1 cut(s) 703
AluBI AGCT 4 cut(s) 296, 674, 808, 813
AluI AGCT 4 cut(s) 296, 674, 808, 813
Alw26I GTCTC 2 cut(s) 127, 721
AlwI GGATC 4 cut(s) 70, 100, 425, 496
Ama87I CYCGRG 1 cut(s) 595
Aor51HI AGCGCT 1 cut(s) 408
AoxI GGCC 2 cut(s) 287, 358
ApeKI GCWGC 3 cut(s) 35, 399, 500
ApoI RAATTY 1 cut(s) 158
AspLEI GCGC 2 cut(s) 385, 409
AspS9I GGNCC 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 506
AvaI CYCGRG 1 cut(s) 595
AvaII GGWCC 1 cut(s) 348
BbvI GCAGC 3 cut(s) 47, 411, 487
BccI CCATC 4 cut(s) 280, 519, 610, 616
BceAI ACGGC 2 cut(s) 315, 373
BcgI CGANNNNNNTGC 4 cut(s) 14, 48, 280, 314
BciT130I CCWGG 1 cut(s) 705
BclI TGATCA 1 cut(s) 243
BcoDI GTCTC 2 cut(s) 127, 721
BfaI CTAG 2 cut(s) 257, 470
BfmI CTRYAG 2 cut(s) 16, 33
BfoI RGCGCY 1 cut(s) 410
BglII AGATCT 1 cut(s) 61
BisI GCNGC 4 cut(s) 36, 400, 498, 501
BlpI GCTNAGC 1 cut(s) 809
BlsI GCNGC 4 cut(s) 37, 401, 499, 502
BmcAI AGTACT 1 cut(s) 593
Bme1390I CCNGG 1 cut(s) 705
Bme18I GGWCC 1 cut(s) 348
BmeT110I CYCGRG 1 cut(s) 595
BmgT120I GGNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 705
BmsI GCATC 2 cut(s) 310, 580
Bpu1102I GCTNAGC 1 cut(s) 809
BsaBI GATNNNNATC 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 523
Bse118I RCCGGY 2 cut(s) 91, 285
Bse1I ACTGG 4 cut(s) 302, 373, 419, 765
Bse3DI GCAATG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 248
BseBI CCWGG 1 cut(s) 705
BseGI GGATG 3 cut(s) 249, 339, 667
BseJI GATNNNNATC 1 cut(s) 248
BseLI CCNNNNNNNGG 2 cut(s) 132, 523
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 747
BseNI ACTGG 4 cut(s) 302, 373, 419, 765
BseRI GAGGAG 1 cut(s) 56
BseX3I CGGCCG 1 cut(s) 287
BseXI GCAGC 3 cut(s) 47, 411, 487
Bsh1236I CGCG 2 cut(s) 383, 385
Bsh1285I CGRYCG 1 cut(s) 290
BshFI GGCC 2 cut(s) 289, 360
BsiEI CGRYCG 1 cut(s) 290
BsiHKCI CYCGRG 1 cut(s) 595
BsiSI CCGG 4 cut(s) 92, 286, 558, 639
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 2 cut(s) 132, 523
BsmAI GTCTC 2 cut(s) 127, 721
BsmFI GGGAC 1 cut(s) 644
BsnI GGCC 2 cut(s) 289, 360
BsoBI CYCGRG 1 cut(s) 595
Bsp143I GATC 7 cut(s) 61, 75, 98, 105, 243, 417, 488
Bsp1720I GCTNAGC 1 cut(s) 809
BspACI CCGC 4 cut(s) 385, 402, 498, 561
BspANI GGCC 2 cut(s) 289, 360
BspCNI CTCAG 1 cut(s) 748
BspFNI CGCG 2 cut(s) 383, 385
BspMAI CTGCAG 1 cut(s) 37
BspPI GGATC 4 cut(s) 70, 100, 425, 496
BspQI GCTCTTC 1 cut(s) 471
BsrDI GCAATG 1 cut(s) 240
BsrFI RCCGGY 2 cut(s) 91, 285
BsrI ACTGG 4 cut(s) 302, 373, 419, 765
BssAI RCCGGY 2 cut(s) 91, 285
BssMI GATC 7 cut(s) 61, 75, 98, 105, 243, 417, 488
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 1 cut(s) 742
Bst6I CTCTTC 1 cut(s) 471
BstC8I GCNNGC 2 cut(s) 93, 397
BstDEI CTNAG 4 cut(s) 518, 728, 756, 809
BstENI CCTNNNNNAGG 1 cut(s) 521
BstF5I GGATG 3 cut(s) 249, 339, 667
BstFNI CGCG 2 cut(s) 383, 385
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 2 cut(s) 385, 409
BstKTI GATC 7 cut(s) 64, 78, 101, 108, 246, 420, 491
BstMAI GTCTC 2 cut(s) 127, 721
BstMBI GATC 7 cut(s) 61, 75, 98, 105, 243, 417, 488
BstMCI CGRYCG 1 cut(s) 290
BstNI CCWGG 1 cut(s) 705
BstNSI RCATGY 2 cut(s) 399, 701
BstSCI CCNGG 1 cut(s) 703
BstSFI CTRYAG 2 cut(s) 16, 33
BstUI CGCG 2 cut(s) 383, 385
BstV1I GCAGC 3 cut(s) 47, 411, 487
BstX2I RGATCY 2 cut(s) 61, 75
BstYI RGATCY 2 cut(s) 61, 75
BstZI CGGCCG 1 cut(s) 287
BsuRI GGCC 2 cut(s) 289, 360
BtsCI GGATG 3 cut(s) 249, 339, 667
BtsIMutI CAGTG 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 93, 397
CfoI GCGC 2 cut(s) 385, 409
Cfr10I RCCGGY 2 cut(s) 91, 285
Cfr13I GGNCC 1 cut(s) 348
Csp6I GTAC 3 cut(s) 455, 592, 655
CviAII CATG 3 cut(s) 241, 396, 698
CviQI GTAC 3 cut(s) 455, 592, 655
DdeI CTNAG 4 cut(s) 518, 728, 756, 809
DpnI GATC 7 cut(s) 63, 77, 100, 107, 245, 419, 490
DpnII GATC 7 cut(s) 61, 75, 98, 105, 243, 417, 488
EaeI YGGCCR 1 cut(s) 287
EagI CGGCCG 1 cut(s) 287
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
EclXI CGGCCG 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 348
Eco47III AGCGCT 1 cut(s) 408
Eco52I CGGCCG 1 cut(s) 287
Eco88I CYCGRG 1 cut(s) 595
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 703
FaeI CATG 3 cut(s) 244, 399, 701
FaiI YATR 8 cut(s) 56, 242, 397, 540, 586, 699, 723, 829
FaqI GGGAC 1 cut(s) 644
FatI CATG 3 cut(s) 240, 395, 697
FbaI TGATCA 1 cut(s) 243
FblI GTMKAC 2 cut(s) 166, 389
Fnu4HI GCNGC 4 cut(s) 36, 400, 498, 501
FokI GGATG 3 cut(s) 236, 326, 654
Fsp4HI GCNGC 4 cut(s) 36, 400, 498, 501
FspBI CTAG 2 cut(s) 257, 470
GlaI GCGC 2 cut(s) 384, 408
GluI GCNGC 4 cut(s) 36, 400, 498, 501
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 2 cut(s) 289, 360
HapII CCGG 4 cut(s) 92, 286, 558, 639
HhaI GCGC 2 cut(s) 385, 409
Hin1II CATG 3 cut(s) 244, 399, 701
Hin6I GCGC 2 cut(s) 383, 407
HinP1I GCGC 2 cut(s) 383, 407
HincII GTYRAC 2 cut(s) 439, 762
HindII GTYRAC 2 cut(s) 439, 762
HinfI GANTC 3 cut(s) 21, 26, 554
HpaI GTTAAC 1 cut(s) 762
HpaII CCGG 4 cut(s) 92, 286, 558, 639
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 6 cut(s) 167, 390, 428, 439, 457, 762
Hpy188I TCNGA 6 cut(s) 105, 151, 279, 308, 576, 757
Hpy188III TCNNGA 3 cut(s) 470, 745, 803
Hpy8I GTNNAC 6 cut(s) 167, 390, 428, 439, 457, 762
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 742
HpyCH4V TGCA 8 cut(s) 4, 35, 233, 354, 395, 399, 571, 697
HpyF3I CTNAG 4 cut(s) 518, 728, 756, 809
Hsp92II CATG 3 cut(s) 244, 399, 701
HspAI GCGC 2 cut(s) 383, 407
KroI GCCGGC 1 cut(s) 91
KroNI GCCGGC 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 243
KspAI GTTAAC 1 cut(s) 762
Kzo9I GATC 7 cut(s) 61, 75, 98, 105, 243, 417, 488
LguI GCTCTTC 1 cut(s) 471
LmnI GCTCC 2 cut(s) 404, 437
Lsp1109I GCAGC 3 cut(s) 47, 411, 487
LweI GCATC 2 cut(s) 310, 580
MaeI CTAG 2 cut(s) 257, 470
MaeIII GTNAC 4 cut(s) 375, 506, 742, 795
MalI GATC 7 cut(s) 63, 77, 100, 107, 245, 419, 490
MboI GATC 7 cut(s) 61, 75, 98, 105, 243, 417, 488
MboII GAAGA 3 cut(s) 71, 488, 744
MflI RGATCY 2 cut(s) 61, 75
MluCI AATT 2 cut(s) 158, 783
MlyI GAGTC 1 cut(s) 563
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 7 cut(s) 77, 89, 188, 264, 371, 621, 673
MroNI GCCGGC 1 cut(s) 91
MseI TTAA 2 cut(s) 282, 761
MspA1I CMGCKG 3 cut(s) 402, 500, 674
MspI CCGG 4 cut(s) 92, 286, 558, 639
MspR9I CCNGG 1 cut(s) 705
MvaI CCWGG 1 cut(s) 705
MvnI CGCG 2 cut(s) 383, 385
NaeI GCCGGC 1 cut(s) 93
NdeII GATC 7 cut(s) 61, 75, 98, 105, 243, 417, 488
NgoMIV GCCGGC 1 cut(s) 91
NlaIII CATG 3 cut(s) 244, 399, 701
NmuCI GTSAC 1 cut(s) 742
NspI RCATGY 2 cut(s) 399, 701
PaeI GCATGC 1 cut(s) 399
PciSI GCTCTTC 1 cut(s) 471
PdiI GCCGGC 1 cut(s) 93
PfeI GAWTC 2 cut(s) 21, 26
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 4 cut(s) 37, 401, 499, 502
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
PsiI TTATAA 1 cut(s) 723
Psp6I CCWGG 1 cut(s) 703
PspGI CCWGG 1 cut(s) 703
PspPI GGNCC 1 cut(s) 348
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 2 cut(s) 61, 75
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 3 cut(s) 456, 593, 656
RsaNI GTAC 3 cut(s) 455, 592, 655
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 2 cut(s) 282, 761
SatI GCNGC 4 cut(s) 36, 400, 498, 501
Sau3AI GATC 7 cut(s) 61, 75, 98, 105, 243, 417, 488
Sau96I GGNCC 1 cut(s) 348
ScaI AGTACT 1 cut(s) 593
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 1 cut(s) 705
SetI ASST 7 cut(s) 180, 262, 298, 519, 676, 810, 815
SfaNI GCATC 2 cut(s) 310, 580
SfcI CTRYAG 2 cut(s) 16, 33
SinI GGWCC 1 cut(s) 348
SphI GCATGC 1 cut(s) 399
Sse9I AATT 2 cut(s) 158, 783
SsiI CCGC 4 cut(s) 385, 402, 498, 561
SspMI CTAG 2 cut(s) 257, 470
StyD4I CCNGG 1 cut(s) 703
TaaI ACNGT 1 cut(s) 742
TaqI TCGA 4 cut(s) 24, 97, 315, 802
TaqII GACCGA 1 cut(s) 336
TasI AATT 2 cut(s) 158, 783
TatI WGTACW 1 cut(s) 591
TauI GCSGC 1 cut(s) 500
TfiI GAWTC 2 cut(s) 21, 26
Tru1I TTAA 2 cut(s) 282, 761
Tru9I TTAA 2 cut(s) 282, 761
TscAI CASTG 1 cut(s) 419
TseFI GTSAC 1 cut(s) 742
TseI GCWGC 3 cut(s) 35, 399, 500
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 1 cut(s) 489
TspGWI ACGGA 3 cut(s) 98, 152, 424
TspRI CASTG 1 cut(s) 419
Van91I CCANNNNNTGG 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 348
XagI CCTNNNNNAGG 1 cut(s) 521
XapI RAATTY 1 cut(s) 158
XbaI TCTAGA 1 cut(s) 469
XceI RCATGY 2 cut(s) 399, 701
XmiI GTMKAC 2 cut(s) 166, 389
XspI CTAG 2 cut(s) 257, 470
ZrmI AGTACT 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.