RLG00000005780

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018189
Physical Location & Seq
Forward (+)
1675123 .. 1676669
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005780

Sequence Viewer

Length: 648 bp
ATGCCCATGATCATCATCCCTCTAGGTAAAGCAATCCCATCTCGGATTAACCGGCCGAAAGCTCTGCCAGTCCGATGTTTCGATGATGCTTGTTGCCGTATCAACATCCTTCAGTCCTGCAACGGCCTCTTGCTCTGCCAGTCCGATGTTTCTCCTGAGTCTGTTTATGTTGTCAATCCTAGTACTACTAACCAATTCGAGAACGTTTCTTATCCTCATAACTCGTCTAGTGAAGAACCATACGAATGGCTATATGGTTTGGCTTTTGACCCTTCCAAATCACCTTATTACAAGGTGTACACGCGCGGTCTACTGCATGCAGCGGAGCGCTTCACTCTCAGGAATACCAAGTTGGTACACTTCTATAATCTAGATGAAGAGCGTTTGGGATCAGTCGCCGCTGTGAGTTACCACCGCCTTAATAAGGGGGAAATCGTCTATAGATATTTTGTCAAGTACCACGTTGATCACATTCCTACCATGGCTGGTTTTCCTGAGAGTAGTCTTTTCTGGTTCAATTGTGATTTTGTCGTCTTGTTACTTGCTGTAGATGAGCAGAAAGGACATCCAGCTGATGAGGAAGTGTTGATGTTGCATGTTCCTGCTAAATACATGCTGGTGGACAGAATTTTGATTGTTTGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

216

Amino Acids

24.64

Weight (kDa)

6.23

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018189)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0444981
rosa_laevigata RLG00000005780
rosa_multiflora Rmu_sc0011561.1_g000009
rosa_roxburghii Rroxscaffold_5G00385490
rosa_rugosa Rorug04G0357000
rosa_samantha Rh4AG418800 Rh4AG418900 Rh4BG430500 Rh4BG430600 Rh4DG426500 Rh5CG312200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 310
AccII CGCG 2 cut(s) 304, 306
AciI CCGC 4 cut(s) 306, 323, 399, 415
AclI AACGTT 1 cut(s) 204
AclWI GGATC 1 cut(s) 397
AcoI YGGCCR 1 cut(s) 53
AcsI RAATTY 1 cut(s) 627
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 4 cut(s) 184, 299, 357, 458
AfeI AGCGCT 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 424
AgsI TTSAA 1 cut(s) 517
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 2 cut(s) 62, 572
AluI AGCT 2 cut(s) 62, 572
AlwI GGATC 1 cut(s) 397
Aor51HI AGCGCT 1 cut(s) 329
AoxI GGCC 2 cut(s) 53, 124
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 627
AspLEI GCGC 2 cut(s) 306, 330
AsuHPI GGTGA 1 cut(s) 273
BbvI GCAGC 1 cut(s) 332
BccI CCATC 1 cut(s) 46
BceAI ACGGC 2 cut(s) 81, 139
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BclI TGATCA 2 cut(s) 9, 466
BfaI CTAG 4 cut(s) 23, 180, 228, 371
BfmI CTRYAG 2 cut(s) 439, 546
BfoI RGCGCY 1 cut(s) 331
BisI GCNGC 2 cut(s) 321, 399
BlsI GCNGC 2 cut(s) 322, 400
BmcAI AGTACT 1 cut(s) 184
BmsI GCATC 1 cut(s) 76
BsaBI GATNNNNATC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 480
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 2 cut(s) 68, 139
Bse8I GATNNNNATC 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 3 cut(s) 15, 105, 565
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMII CTCAG 3 cut(s) 147, 352, 486
BseNI ACTGG 2 cut(s) 68, 139
BseX3I CGGCCG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 332
Bsh1236I CGCG 2 cut(s) 304, 306
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 2 cut(s) 55, 126
BsiEI CGRYCG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 424
BsnI GGCC 2 cut(s) 55, 126
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 3 cut(s) 9, 389, 466
Bsp19I CCATGG 1 cut(s) 480
BspACI CCGC 4 cut(s) 306, 323, 399, 415
BspANI GGCC 2 cut(s) 55, 126
BspCNI CTCAG 3 cut(s) 148, 351, 487
BspFNI CGCG 2 cut(s) 304, 306
BspPI GGATC 1 cut(s) 397
BspQI GCTCTTC 1 cut(s) 372
BsrFI RCCGGY 1 cut(s) 51
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 2 cut(s) 68, 139
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 3 cut(s) 9, 389, 466
BssT1I CCWWGG 1 cut(s) 480
Bst6I CTCTTC 1 cut(s) 372
BstAUI TGTACA 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 3 cut(s) 156, 338, 495
BstDSI CCRYGG 1 cut(s) 480
BstENI CCTNNNNNAGG 1 cut(s) 422
BstF5I GGATG 3 cut(s) 15, 105, 565
BstFNI CGCG 2 cut(s) 304, 306
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 2 cut(s) 306, 330
BstKTI GATC 3 cut(s) 12, 392, 469
BstMBI GATC 3 cut(s) 9, 389, 466
BstMCI CGRYCG 1 cut(s) 56
BstNSI RCATGY 3 cut(s) 320, 599, 616
BstSFI CTRYAG 2 cut(s) 439, 546
BstUI CGCG 2 cut(s) 304, 306
BstV1I GCAGC 1 cut(s) 332
BstXI CCANNNNNNTGG 1 cut(s) 246
BstZI CGGCCG 1 cut(s) 53
BsuRI GGCC 2 cut(s) 55, 126
BtgI CCRYGG 1 cut(s) 480
BtsCI GGATG 3 cut(s) 15, 105, 565
Cac8I GCNNGC 1 cut(s) 318
CfoI GCGC 2 cut(s) 306, 330
Cfr10I RCCGGY 1 cut(s) 51
Csp6I GTAC 4 cut(s) 183, 298, 356, 457
CviAII CATG 5 cut(s) 7, 317, 481, 596, 613
CviJI RGCY 7 cut(s) 55, 62, 126, 250, 263, 485, 572
CviKI_1 RGCY 7 cut(s) 55, 62, 126, 250, 263, 485, 572
CviQI GTAC 4 cut(s) 183, 298, 356, 457
DdeI CTNAG 3 cut(s) 156, 338, 495
DpnI GATC 3 cut(s) 11, 391, 468
DpnII GATC 3 cut(s) 9, 389, 466
EaeI YGGCCR 1 cut(s) 53
EagI CGGCCG 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EclXI CGGCCG 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 480
Eco47III AGCGCT 1 cut(s) 329
Eco52I CGGCCG 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 5 cut(s) 10, 320, 484, 599, 616
FatI CATG 5 cut(s) 6, 316, 480, 595, 612
FbaI TGATCA 2 cut(s) 9, 466
FblI GTMKAC 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 321, 399
FokI GGATG 3 cut(s) 2, 92, 552
Fsp4HI GCNGC 2 cut(s) 321, 399
FspBI CTAG 4 cut(s) 23, 180, 228, 371
GlaI GCGC 2 cut(s) 305, 329
GluI GCNGC 2 cut(s) 321, 399
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 2 cut(s) 55, 126
HapII CCGG 1 cut(s) 52
HhaI GCGC 2 cut(s) 306, 330
Hin1II CATG 5 cut(s) 10, 320, 484, 599, 616
Hin6I GCGC 2 cut(s) 304, 328
HinP1I GCGC 2 cut(s) 304, 328
HinfI GANTC 1 cut(s) 158
HpaII CCGG 1 cut(s) 52
HphI GGTGA 1 cut(s) 273
Hpy166II GTNNAC 5 cut(s) 298, 300, 311, 358, 622
Hpy188I TCNGA 3 cut(s) 45, 74, 145
Hpy188III TCNNGA 5 cut(s) 155, 199, 340, 371, 494
Hpy8I GTNNAC 5 cut(s) 298, 300, 311, 358, 622
HpyAV CCTTC 2 cut(s) 119, 282
HpyCH4IV ACGT 2 cut(s) 204, 462
HpyCH4V TGCA 4 cut(s) 120, 316, 320, 595
HpyF3I CTNAG 3 cut(s) 156, 338, 495
HpySE526I ACGT 2 cut(s) 204, 462
Hsp92II CATG 5 cut(s) 10, 320, 484, 599, 616
HspAI GCGC 2 cut(s) 304, 328
Ksp22I TGATCA 2 cut(s) 9, 466
Kzo9I GATC 3 cut(s) 9, 389, 466
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 325
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 1 cut(s) 76
MaeI CTAG 4 cut(s) 23, 180, 228, 371
MaeII ACGT 2 cut(s) 204, 462
MaeIII GTNAC 2 cut(s) 407, 537
MalI GATC 3 cut(s) 11, 391, 468
MboI GATC 3 cut(s) 9, 389, 466
MboII GAAGA 2 cut(s) 245, 389
MfeI CAATTG 1 cut(s) 517
MluCI AATT 3 cut(s) 194, 517, 627
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 4 cut(s) 30, 137, 225, 571
MseI TTAA 2 cut(s) 48, 420
MslI CAYNNNNRTG 2 cut(s) 244, 617
MspA1I CMGCKG 3 cut(s) 323, 401, 572
MspI CCGG 1 cut(s) 52
MunI CAATTG 1 cut(s) 517
MvnI CGCG 2 cut(s) 304, 306
NcoI CCATGG 1 cut(s) 480
NdeII GATC 3 cut(s) 9, 389, 466
NlaIII CATG 5 cut(s) 10, 320, 484, 599, 616
NspI RCATGY 3 cut(s) 320, 599, 616
PaeI GCATGC 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 372
PkrI GCNGC 2 cut(s) 322, 400
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp1406I AACGTT 1 cut(s) 204
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 4 cut(s) 184, 299, 357, 458
RsaNI GTAC 4 cut(s) 183, 298, 356, 457
RseI CAYNNNNRTG 2 cut(s) 244, 617
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 2 cut(s) 48, 420
SatI GCNGC 2 cut(s) 321, 399
Sau3AI GATC 3 cut(s) 9, 389, 466
ScaI AGTACT 1 cut(s) 184
SchI GAGTC 1 cut(s) 167
SetI ASST 7 cut(s) 28, 64, 207, 286, 297, 465, 574
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 2 cut(s) 439, 546
SmiMI CAYNNNNRTG 2 cut(s) 244, 617
SphI GCATGC 1 cut(s) 320
Sse9I AATT 3 cut(s) 194, 517, 627
SsiI CCGC 4 cut(s) 306, 323, 399, 415
SspMI CTAG 4 cut(s) 23, 180, 228, 371
StyI CCWWGG 1 cut(s) 480
TaiI ACGT 2 cut(s) 207, 465
TaqI TCGA 2 cut(s) 81, 198
TasI AATT 3 cut(s) 194, 517, 627
TatI WGTACW 2 cut(s) 182, 297
TauI GCSGC 1 cut(s) 401
Tru1I TTAA 2 cut(s) 48, 420
Tru9I TTAA 2 cut(s) 48, 420
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 390
XagI CCTNNNNNAGG 1 cut(s) 422
XapI RAATTY 1 cut(s) 627
XbaI TCTAGA 1 cut(s) 370
XceI RCATGY 3 cut(s) 320, 599, 616
XmiI GTMKAC 1 cut(s) 310
XspI CTAG 4 cut(s) 23, 180, 228, 371
ZrmI AGTACT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.