Rmu_sc0011561.1_g000009

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011561.1
OG0018189
Physical Location & Seq
Reverse (-)
42589 .. 48433
5845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011561.1_g000009.1.cds

Sequence Viewer

Length: 1674 bp
atgccttcatggcaccaaatccgtatgtactcgtctcagactcgaacttggaggcttctcgaggaggagcctagaaagttaattcctactttcacccctattgagcagtacacgcgcggtctactgcatgcagcggagcgcttcactggatcagggatatttggggagtccggtggtcatctgcatctgattgatacatacgagtactcgggtaatgcttttgatgtgatggagatggggagggactactccggctggtttgtcaagtaccacgttgatctcattcctaccatggctggttttcctgaaagtagtcttttctggtacaattgtgattttgtcgtcttgttacttgctctagatgagcagaaaggacatccagctgatgaggaagtgttgatgttgcatgttcctggtaaagttgtctcttataatcttaggagtaagactgtcacgacatcttctgagttaaccagtagagattacttactaattagggattgtcctgcaacggcttcttgctctgccagtgtttctcctgagtctgtttatgttgtcaatcctaccactaaccaattcgagaacgtttcttatccccatgataactcgtctagtgaagaaccatacgaatggctatatcgtttggcttttaaatcaccttattacaaggtggtatgccttcatggcaccaaatccgtatgtactcgtctcagactcgaacttggaggcttctcgaggaggagcctagaaaatgaagagcgtttgggatcagtcgccgctgcgagttaccatcaccttaataagggggaaatcgtttatagatattttggggagtccggtggtcatctgcatctgattgatacatacgagtactcgggtaatgcttttgatgtgatggagatggggagggactactccggctggtttgtcaagtaccacgttgatctcattcctaccatggctggttttcctgaaagtagtcttttctggtacaattgtgattttgtcgtcttgttacttgctctagatgagcagaaaggacatccagctgatgaggaagtgttgatgttgcatgttcctgtttacccaagaagtgaatgtgataaaagatcccggtcaaaattgacgcctaaccgaagtccttacaatcacttgaaagcagtcagatacaagcgcaaatcatatctaaacctcgctaggccaataggccacgagttggcacgcccgcattatttcagaagcacgattcaaccacaggttattaatccctacaaaactctcaaccagaattcagttgatccacatgcctccacctgctggatccttcagtcctacaatggcctcctcctctgcatggcatatggtagagaacgggaaagacctcctcttgccataagtatagatatttcggagagtctgattgacatttataggaattccgttactcaatttgatgtgatagagatggggaaggactattctggctggtttgtcaagtaccgtgtcgatcttgatatggtagcggctgtcttcccagatattcttcatcagttttgttataactctgttatcttgttagttactccagaggaaaaagaagatgatccagaggaggaggattcgtctccgcatttggtattgcatattcttggtaagcttagtcttctaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

557

Amino Acids

63.98

Weight (kDa)

5.69

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018189)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0444981
rosa_laevigata RLG00000005780
rosa_multiflora Rmu_sc0011561.1_g000009
rosa_roxburghii Rroxscaffold_5G00385490
rosa_rugosa Rorug04G0357000
rosa_samantha Rh4AG418800 Rh4AG418900 Rh4BG430500 Rh4BG430600 Rh4DG426500 Rh5CG312200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 432, 1560
AarI CACCTGC 1 cut(s) 1322
Acc36I ACCTGC 1 cut(s) 1322
AccB1I GGYRCC 2 cut(s) 12, 686
AccB7I CCANNNNNTGG 2 cut(s) 1216, 1317
AccI GTMKAC 1 cut(s) 121
AccII CGCG 2 cut(s) 115, 117
AciI CCGC 6 cut(s) 117, 134, 777, 1226, 1523, 1628
AclI AACGTT 1 cut(s) 585
AclWI GGATC 7 cut(s) 157, 775, 1104, 1292, 1315, 1328, 1598
AcsI RAATTY 2 cut(s) 1288, 1435
AcuI CTGAAG 1 cut(s) 1310
AcyI GRCGYC 1 cut(s) 1127
AfeI AGCGCT 1 cut(s) 140
AfiI CCNNNNNNNGG 4 cut(s) 802, 1216, 1317, 1354
AgsI TTSAA 2 cut(s) 1156, 1250
AjnI CCWGG 1 cut(s) 412
AluBI AGCT 3 cut(s) 383, 1049, 1657
AluI AGCT 3 cut(s) 383, 1049, 1657
Alw26I GTCTC 4 cut(s) 39, 430, 713, 1629
AlwI GGATC 7 cut(s) 157, 775, 1104, 1292, 1315, 1328, 1598
Ama87I CYCGRG 4 cut(s) 59, 208, 733, 874
Aor51HI AGCGCT 1 cut(s) 140
AoxI GGCC 3 cut(s) 1199, 1207, 1339
ApeKI GCWGC 2 cut(s) 131, 779
ApoI RAATTY 2 cut(s) 1288, 1435
AseI ATTAAT 1 cut(s) 1263
AspLEI GCGC 3 cut(s) 117, 141, 1176
AsuC2I CCSGG 1 cut(s) 1114
AsuHPI GGTGA 3 cut(s) 85, 648, 785
AvaI CYCGRG 4 cut(s) 59, 208, 733, 874
BaeI ACNNNNGTAYC 4 cut(s) 316, 349, 982, 1015
BamHI GGATCC 1 cut(s) 1320
BanI GGYRCC 2 cut(s) 12, 686
BauI CACGAG 1 cut(s) 1211
BbsI GAAGAC 2 cut(s) 1522, 1655
BbvI GCAGC 2 cut(s) 143, 766
BccI CCATC 6 cut(s) 223, 229, 798, 889, 895, 1459
BceAI ACGGC 1 cut(s) 528
BciT130I CCWGG 1 cut(s) 414
BcnI CCSGG 1 cut(s) 1114
BcoDI GTCTC 4 cut(s) 39, 430, 713, 1629
BfaI CTAG 6 cut(s) 72, 359, 612, 746, 1025, 1197
BfoI RGCGCY 1 cut(s) 142
BfuAI ACCTGC 1 cut(s) 1322
BglI GCCNNNNNGGC 2 cut(s) 10, 684
BisI GCNGC 4 cut(s) 132, 777, 780, 1524
BlsI GCNGC 4 cut(s) 133, 778, 781, 1525
BmcAI AGTACT 2 cut(s) 206, 872
Bme1390I CCNGG 2 cut(s) 414, 1114
BmeT110I CYCGRG 4 cut(s) 59, 208, 733, 874
BmiI GGNNCC 5 cut(s) 14, 69, 688, 743, 1322
BmrFI CCNGG 2 cut(s) 414, 1114
BmsI GCATC 2 cut(s) 193, 859
BpiI GAAGAC 2 cut(s) 1522, 1655
BpmI CTGGAG 1 cut(s) 1569
BpuMI CCSGG 1 cut(s) 1114
BsaHI GRCGYC 1 cut(s) 1127
BsaJI CCNNGG 2 cut(s) 291, 957
BsaWI WCCGGW 2 cut(s) 170, 836
BsaXI ACNNNNNCTCC 2 cut(s) 1607, 1637
Bsc4I CCNNNNNNNGG 4 cut(s) 802, 1216, 1317, 1354
Bse1I ACTGG 3 cut(s) 151, 474, 528
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 291, 957
BseGI GGATG 2 cut(s) 376, 1042
BseLI CCNNNNNNNGG 4 cut(s) 802, 1216, 1317, 1354
BseMII CTCAG 4 cut(s) 50, 456, 531, 724
BseNI ACTGG 3 cut(s) 151, 474, 528
BseRI GAGGAG 9 cut(s) 77, 80, 751, 754, 1334, 1337, 1374, 1625, 1628
BseXI GCAGC 2 cut(s) 143, 766
Bsh1236I CGCG 2 cut(s) 115, 117
BshFI GGCC 3 cut(s) 1201, 1209, 1341
BshNI GGYRCC 2 cut(s) 12, 686
BsiHKCI CYCGRG 4 cut(s) 59, 208, 733, 874
BsiSI CCGG 5 cut(s) 171, 252, 837, 918, 1114
BslFI GGGAC 2 cut(s) 257, 923
BslI CCNNNNNNNGG 4 cut(s) 802, 1216, 1317, 1354
BsmAI GTCTC 4 cut(s) 39, 430, 713, 1629
BsmBI CGTCTC 3 cut(s) 39, 713, 1629
BsmFI GGGAC 2 cut(s) 257, 923
BsnI GGCC 3 cut(s) 1201, 1209, 1341
BsoBI CYCGRG 4 cut(s) 59, 208, 733, 874
Bsp143I GATC 9 cut(s) 149, 277, 767, 943, 1109, 1297, 1320, 1507, 1603
Bsp19I CCATGG 2 cut(s) 291, 957
BspACI CCGC 6 cut(s) 117, 134, 777, 1226, 1523, 1628
BspANI GGCC 3 cut(s) 1201, 1209, 1341
BspCNI CTCAG 4 cut(s) 49, 457, 532, 723
BspFNI CGCG 2 cut(s) 115, 117
BspLI GGNNCC 5 cut(s) 14, 69, 688, 743, 1322
BspMI ACCTGC 1 cut(s) 1322
BspPI GGATC 7 cut(s) 157, 775, 1104, 1292, 1315, 1328, 1598
BspQI GCTCTTC 1 cut(s) 750
BspT107I GGYRCC 2 cut(s) 12, 686
BsrI ACTGG 3 cut(s) 151, 474, 528
BssECI CCNNGG 2 cut(s) 291, 957
BssMI GATC 9 cut(s) 149, 277, 767, 943, 1109, 1297, 1320, 1507, 1603
BssNI GRCGYC 1 cut(s) 1127
BssSI CACGAG 1 cut(s) 1211
BssT1I CCWWGG 2 cut(s) 291, 957
Bst2BI CACGAG 1 cut(s) 1211
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 2 cut(s) 451, 1502
Bst6I CTCTTC 1 cut(s) 750
BstACI GRCGYC 1 cut(s) 1127
BstC8I GCNNGC 3 cut(s) 129, 1222, 1226
BstDEI CTNAG 6 cut(s) 36, 437, 465, 540, 710, 1658
BstDSI CCRYGG 2 cut(s) 291, 957
BstENI CCTNNNNNAGG 1 cut(s) 800
BstF5I GGATG 2 cut(s) 376, 1042
BstFNI CGCG 2 cut(s) 115, 117
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 3 cut(s) 117, 141, 1176
BstKTI GATC 9 cut(s) 152, 280, 770, 946, 1112, 1300, 1323, 1510, 1606
BstMAI GTCTC 4 cut(s) 39, 430, 713, 1629
BstMBI GATC 9 cut(s) 149, 277, 767, 943, 1109, 1297, 1320, 1507, 1603
BstMWI GCNNNNNNNGC 3 cut(s) 10, 112, 684
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 4 cut(s) 131, 410, 1076, 1307
BstSCI CCNGG 2 cut(s) 412, 1112
BstUI CGCG 2 cut(s) 115, 117
BstV1I GCAGC 2 cut(s) 143, 766
BstV2I GAAGAC 2 cut(s) 1522, 1655
BstX2I RGATCY 2 cut(s) 1109, 1320
BstXI CCANNNNNNTGG 1 cut(s) 630
BstYI RGATCY 2 cut(s) 1109, 1320
BsuRI GGCC 3 cut(s) 1201, 1209, 1341
BtgI CCRYGG 2 cut(s) 291, 957
BtsCI GGATG 2 cut(s) 376, 1042
BtsIMutI CAGTG 2 cut(s) 144, 535
BveI ACCTGC 1 cut(s) 1322
Cac8I GCNNGC 3 cut(s) 129, 1222, 1226
CfoI GCGC 3 cut(s) 117, 141, 1176
CseI GACGC 1 cut(s) 1135
DdeI CTNAG 6 cut(s) 36, 437, 465, 540, 710, 1658
DpnI GATC 9 cut(s) 151, 279, 769, 945, 1111, 1299, 1322, 1509, 1605
DpnII GATC 9 cut(s) 149, 277, 767, 943, 1109, 1297, 1320, 1507, 1603
DraI TTTAAA 1 cut(s) 652
Eam1104I CTCTTC 1 cut(s) 750
EarI CTCTTC 1 cut(s) 750
Eco130I CCWWGG 2 cut(s) 291, 957
Eco47III AGCGCT 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 1310
Eco88I CYCGRG 4 cut(s) 59, 208, 733, 874
EcoNI CCTNNNNNAGG 1 cut(s) 800
EcoRI GAATTC 2 cut(s) 1288, 1435
EcoRII CCWGG 1 cut(s) 412
EcoT14I CCWWGG 2 cut(s) 291, 957
ErhI CCWWGG 2 cut(s) 291, 957
Esp3I CGTCTC 3 cut(s) 39, 713, 1629
FaqI GGGAC 2 cut(s) 257, 923
FauI CCCGC 1 cut(s) 1233
FauNDI CATATG 1 cut(s) 1360
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 4 cut(s) 132, 777, 780, 1524
FokI GGATG 2 cut(s) 363, 1029
Fsp4HI GCNGC 4 cut(s) 132, 777, 780, 1524
FspBI CTAG 6 cut(s) 72, 359, 612, 746, 1025, 1197
GlaI GCGC 3 cut(s) 116, 140, 1175
GluI GCNGC 4 cut(s) 132, 777, 780, 1524
GsuI CTGGAG 1 cut(s) 1569
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 3 cut(s) 1201, 1209, 1341
HapII CCGG 5 cut(s) 171, 252, 837, 918, 1114
HgaI GACGC 1 cut(s) 1135
HhaI GCGC 3 cut(s) 117, 141, 1176
Hin1I GRCGYC 1 cut(s) 1127
Hin6I GCGC 3 cut(s) 115, 139, 1174
HinP1I GCGC 3 cut(s) 115, 139, 1174
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HindIII AAGCTT 1 cut(s) 1655
HinfI GANTC 8 cut(s) 40, 167, 542, 714, 833, 1246, 1414, 1619
HpaI GTTAAC 1 cut(s) 471
HpaII CCGG 5 cut(s) 171, 252, 837, 918, 1114
HphI GGTGA 3 cut(s) 85, 648, 785
Hpy166II GTNNAC 4 cut(s) 111, 122, 471, 1084
Hpy188I TCNGA 9 cut(s) 39, 189, 466, 713, 855, 1166, 1238, 1411, 1419
Hpy8I GTNNAC 4 cut(s) 111, 122, 471, 1084
HpyAV CCTTC 4 cut(s) 15, 689, 1334, 1465
HpyCH4III ACNGT 2 cut(s) 451, 1502
HpyCH4IV ACGT 3 cut(s) 273, 585, 939
HpyCH4V TGCA 9 cut(s) 127, 131, 184, 406, 509, 850, 1072, 1353, 1642
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 112, 684
HpyF3I CTNAG 6 cut(s) 36, 437, 465, 540, 710, 1658
HpySE526I ACGT 3 cut(s) 273, 585, 939
Hsp92I GRCGYC 1 cut(s) 1127
HspAI GCGC 3 cut(s) 115, 139, 1174
KspAI GTTAAC 1 cut(s) 471
Kzo9I GATC 9 cut(s) 149, 277, 767, 943, 1109, 1297, 1320, 1507, 1603
LguI GCTCTTC 1 cut(s) 750
LmnI GCTCC 3 cut(s) 67, 136, 741
Lsp1109I GCAGC 2 cut(s) 143, 766
LweI GCATC 2 cut(s) 193, 859
MaeI CTAG 6 cut(s) 72, 359, 612, 746, 1025, 1197
MaeII ACGT 3 cut(s) 273, 585, 939
MaeIII GTNAC 6 cut(s) 348, 451, 785, 1014, 1441, 1579
MalI GATC 9 cut(s) 151, 279, 769, 945, 1111, 1299, 1322, 1509, 1605
MboI GATC 9 cut(s) 149, 277, 767, 943, 1109, 1297, 1320, 1507, 1603
MboII GAAGA 7 cut(s) 453, 629, 767, 1522, 1535, 1610, 1655
MfeI CAATTG 2 cut(s) 328, 994
MflI RGATCY 2 cut(s) 1109, 1320
MlyI GAGTC 6 cut(s) 34, 176, 551, 708, 842, 1423
MseI TTAA 6 cut(s) 80, 470, 651, 798, 1263, 1672
MslI CAYNNNNRTG 1 cut(s) 628
MspA1I CMGCKG 4 cut(s) 134, 383, 779, 1049
MspI CCGG 5 cut(s) 171, 252, 837, 918, 1114
MspR9I CCNGG 2 cut(s) 414, 1114
MunI CAATTG 2 cut(s) 328, 994
MvaI CCWGG 1 cut(s) 414
MvnI CGCG 2 cut(s) 115, 117
MwoI GCNNNNNNNGC 3 cut(s) 10, 112, 684
NciI CCSGG 1 cut(s) 1114
NcoI CCATGG 2 cut(s) 291, 957
NdeI CATATG 1 cut(s) 1360
NdeII GATC 9 cut(s) 149, 277, 767, 943, 1109, 1297, 1320, 1507, 1603
NlaIV GGNNCC 5 cut(s) 14, 69, 688, 743, 1322
NmuCI GTSAC 1 cut(s) 451
NspI RCATGY 4 cut(s) 131, 410, 1076, 1307
PaeI GCATGC 1 cut(s) 131
PaeR7I CTCGAG 2 cut(s) 59, 733
PaqCI CACCTGC 1 cut(s) 1322
PciSI GCTCTTC 1 cut(s) 750
PfeI GAWTC 2 cut(s) 1246, 1619
PflMI CCANNNNNTGG 2 cut(s) 1216, 1317
PkrI GCNGC 4 cut(s) 133, 778, 781, 1525
PleI GAGTC 6 cut(s) 34, 175, 550, 708, 841, 1422
PpsI GAGTC 6 cut(s) 34, 175, 550, 708, 841, 1422
PshBI ATTAAT 1 cut(s) 1263
PsiI TTATAA 2 cut(s) 432, 1560
Psp1406I AACGTT 1 cut(s) 585
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 5 cut(s) 14, 69, 688, 743, 1322
PsuI RGATCY 2 cut(s) 1109, 1320
PvuII CAGCTG 2 cut(s) 383, 1049
RseI CAYNNNNRTG 1 cut(s) 628
SapI GCTCTTC 1 cut(s) 750
SaqAI TTAA 6 cut(s) 80, 470, 651, 798, 1263, 1672
SatI GCNGC 4 cut(s) 132, 777, 780, 1524
Sau3AI GATC 9 cut(s) 149, 277, 767, 943, 1109, 1297, 1320, 1507, 1603
ScaI AGTACT 2 cut(s) 206, 872
SchI GAGTC 6 cut(s) 34, 176, 551, 708, 842, 1423
ScrFI CCNGG 2 cut(s) 414, 1114
SfaNI GCATC 2 cut(s) 193, 859
Sfr274I CTCGAG 2 cut(s) 59, 733
SlaI CTCGAG 2 cut(s) 59, 733
SmiMI CAYNNNNRTG 1 cut(s) 628
SmlI CTYRAG 2 cut(s) 59, 733
SmoI CTYRAG 2 cut(s) 59, 733
SphI GCATGC 1 cut(s) 131
SsiI CCGC 6 cut(s) 117, 134, 777, 1226, 1523, 1628
SspMI CTAG 6 cut(s) 72, 359, 612, 746, 1025, 1197
StyD4I CCNGG 2 cut(s) 412, 1112
StyI CCWWGG 2 cut(s) 291, 957
TaaI ACNGT 2 cut(s) 451, 1502
TaiI ACGT 3 cut(s) 276, 588, 942
TaqI TCGA 6 cut(s) 43, 60, 579, 717, 734, 1506
TatI WGTACW 5 cut(s) 27, 108, 204, 701, 870
TauI GCSGC 2 cut(s) 779, 1526
TfiI GAWTC 2 cut(s) 1246, 1619
Tru1I TTAA 6 cut(s) 80, 470, 651, 798, 1263, 1672
Tru9I TTAA 6 cut(s) 80, 470, 651, 798, 1263, 1672
TscAI CASTG 2 cut(s) 151, 535
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 2 cut(s) 131, 779
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 3 cut(s) 671, 768, 1535
TspGWI ACGGA 3 cut(s) 11, 685, 1429
TspRI CASTG 2 cut(s) 151, 535
Van91I CCANNNNNTGG 2 cut(s) 1216, 1317
VspI ATTAAT 1 cut(s) 1263
XagI CCTNNNNNAGG 1 cut(s) 800
XapI RAATTY 2 cut(s) 1288, 1435
XbaI TCTAGA 2 cut(s) 358, 1024
XceI RCATGY 4 cut(s) 131, 410, 1076, 1307
XhoI CTCGAG 2 cut(s) 59, 733
XmiI GTMKAC 1 cut(s) 121
XspI CTAG 6 cut(s) 72, 359, 612, 746, 1025, 1197
ZrmI AGTACT 2 cut(s) 206, 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.