Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0018189

Physical Location & Seq

Genomic Coordinates Reverse (-)

71654111 .. 71654530

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG418900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGATGCTTGTTGCCGTATCAACATCCTTCGGTCCTGCAACGGCCTCTTGCTCTGCCAGTGTTTCTCCTGAGTCTGTTTATGTTCTCAATCCTACTACTAACCAATTCGAGAACGTTTCTTATCCTCATGATAACTCATCTAGTGAAGAACCATACGAATGGCTATATCGTTTGGCTTTTAAATCACCTTATTACAAGGTGGTATGCCTTGCATGCATGGCACCAAATCCGTATGTACTCCTCGAGTCCTCTCAGACTCGAACTTGGAGGCTTCTCGAGGAGGAGCCTAGAAAGTTAATTCCTACTTTCACCCCTATTGAGCAGTACACGCGCGGTCTACTGCATGCAGCGGAGCGCTTCACTGGATCAGGGGTAAACGCTCCGTTGACAATACCAAGTTGGTACACTTCAATAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

139

Amino Acids

15.61

Weight (kDa)

5.32

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018189)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0444981
rosa_laevigata	RLG00000005780
rosa_multiflora	Rmu_sc0011561.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385490
rosa_rugosa	Rorug04G0357000
rosa_samantha	Rh4AG418800 Rh4AG418900 Rh4BG430500 Rh4BG430600 Rh4DG426500 Rh5CG312200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AccI	GTMKAC	1 cut(s)	337
AccII	CGCG	2 cut(s)	331, 333
AciI	CCGC	2 cut(s)	333, 350
AclI	AACGTT	1 cut(s)	114
AclWI	GGATC	1 cut(s)	373
AfaI	GTAC	3 cut(s)	237, 326, 404
AfeI	AGCGCT	1 cut(s)	356
AgsI	TTSAA	1 cut(s)	411
AlwI	GGATC	1 cut(s)	373
Ama87I	CYCGRG	2 cut(s)	242, 275
Aor51HI	AGCGCT	1 cut(s)	356
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	347
AspLEI	GCGC	2 cut(s)	333, 357
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	177, 301
AvaI	CYCGRG	2 cut(s)	242, 275
AvaII	GGWCC	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	359
BceAI	ACGGC	1 cut(s)	57
BfaI	CTAG	3 cut(s)	141, 288, 418
BfoI	RGCGCY	1 cut(s)	358
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	32
BmeT110I	CYCGRG	2 cut(s)	242, 275
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	222, 285
Bse1I	ACTGG	2 cut(s)	57, 367
BseGI	GGATG	1 cut(s)	23
BseMII	CTCAG	2 cut(s)	60, 266
BseNI	ACTGG	2 cut(s)	57, 367
BseRI	GAGGAG	3 cut(s)	230, 293, 296
BseXI	GCAGC	1 cut(s)	359
Bsh1236I	CGCG	2 cut(s)	331, 333
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	1 cut(s)	220
BsiHKCI	CYCGRG	2 cut(s)	242, 275
BsnI	GGCC	1 cut(s)	44
BsoBI	CYCGRG	2 cut(s)	242, 275
Bsp143I	GATC	1 cut(s)	365
BspACI	CCGC	2 cut(s)	333, 350
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	61, 265
BspFNI	CGCG	2 cut(s)	331, 333
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	222, 285
BspPI	GGATC	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	57, 367
BssMI	GATC	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	214, 345
BstDEI	CTNAG	2 cut(s)	69, 252
BstF5I	GGATG	1 cut(s)	23
BstFNI	CGCG	2 cut(s)	331, 333
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	2 cut(s)	333, 357
BstKTI	GATC	1 cut(s)	368
BstMBI	GATC	1 cut(s)	365
BstMWI	GCNNNNNNNGC	3 cut(s)	213, 218, 328
BstNSI	RCATGY	2 cut(s)	216, 347
BstUI	CGCG	2 cut(s)	331, 333
BstV1I	GCAGC	1 cut(s)	359
BstXI	CCANNNNNNTGG	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	64, 360
Cac8I	GCNNGC	2 cut(s)	214, 345
CciI	TCATGA	1 cut(s)	127
CfoI	GCGC	2 cut(s)	333, 357
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	3 cut(s)	236, 325, 403
CviAII	CATG	4 cut(s)	128, 213, 217, 344
CviJI	RGCY	5 cut(s)	44, 163, 176, 271, 286
CviKI_1	RGCY	5 cut(s)	44, 163, 176, 271, 286
CviQI	GTAC	3 cut(s)	236, 325, 403
DdeI	CTNAG	2 cut(s)	69, 252
DpnI	GATC	1 cut(s)	367
DpnII	GATC	1 cut(s)	365
DraI	TTTAAA	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	32
Eco47III	AGCGCT	1 cut(s)	356
Eco88I	CYCGRG	2 cut(s)	242, 275
EcoT22I	ATGCAT	1 cut(s)	218
FaeI	CATG	4 cut(s)	131, 216, 220, 347
FaiI	YATR	9 cut(s)	81, 129, 154, 166, 205, 214, 218, 234, 345
FatI	CATG	4 cut(s)	127, 212, 216, 343
FblI	GTMKAC	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	1 cut(s)	10
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	3 cut(s)	141, 288, 418
GlaI	GCGC	2 cut(s)	332, 356
GluI	GCNGC	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	1 cut(s)	44
HhaI	GCGC	2 cut(s)	333, 357
Hin1II	CATG	4 cut(s)	131, 216, 220, 347
Hin6I	GCGC	2 cut(s)	331, 355
HinP1I	GCGC	2 cut(s)	331, 355
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HinfI	GANTC	3 cut(s)	71, 245, 256
HphI	GGTGA	2 cut(s)	177, 301
Hpy166II	GTNNAC	5 cut(s)	327, 338, 376, 387, 405
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	4 cut(s)	68, 109, 128, 275
Hpy8I	GTNNAC	5 cut(s)	327, 338, 376, 387, 405
HpyAV	CCTTC	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	5 cut(s)	38, 212, 216, 343, 347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	213, 218, 328
HpyF3I	CTNAG	2 cut(s)	69, 252
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	131, 216, 220, 347
HspAI	GCGC	2 cut(s)	331, 355
Kzo9I	GATC	1 cut(s)	365
LmnI	GCTCC	3 cut(s)	283, 352, 385
LpnPI	CCDG	5 cut(s)	48, 70, 81, 348, 354
Lsp1109I	GCAGC	1 cut(s)	359
MaeI	CTAG	3 cut(s)	141, 288, 418
MaeII	ACGT	1 cut(s)	114
MalI	GATC	1 cut(s)	367
MboI	GATC	1 cut(s)	365
MboII	GAAGA	1 cut(s)	158
MluCI	AATT	2 cut(s)	104, 297
MlyI	GAGTC	3 cut(s)	80, 250, 254
MnlI	CCTC	7 cut(s)	55, 135, 251, 259, 261, 271, 274
Mph1103I	ATGCAT	1 cut(s)	218
MseI	TTAA	2 cut(s)	180, 296
MslI	CAYNNNNRTG	1 cut(s)	157
MspA1I	CMGCKG	1 cut(s)	350
MvnI	CGCG	2 cut(s)	331, 333
MwoI	GCNNNNNNNGC	3 cut(s)	213, 218, 328
NdeII	GATC	1 cut(s)	365
NlaIII	CATG	4 cut(s)	131, 216, 220, 347
NlaIV	GGNNCC	2 cut(s)	222, 285
NsiI	ATGCAT	1 cut(s)	218
NspI	RCATGY	2 cut(s)	216, 347
PaeI	GCATGC	2 cut(s)	216, 347
PaeR7I	CTCGAG	2 cut(s)	242, 275
PagI	TCATGA	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	3 cut(s)	79, 250, 253
PpsI	GAGTC	3 cut(s)	79, 250, 253
Psp1406I	AACGTT	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	222, 285
PspPI	GGNCC	1 cut(s)	32
PspXI	VCTCGAGB	1 cut(s)	242
RsaI	GTAC	3 cut(s)	237, 326, 404
RsaNI	GTAC	3 cut(s)	236, 325, 403
RseI	CAYNNNNRTG	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	180, 296
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	365
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	3 cut(s)	80, 250, 254
SetI	ASST	3 cut(s)	117, 190, 201
Sfr274I	CTCGAG	2 cut(s)	242, 275
SinI	GGWCC	1 cut(s)	32
SlaI	CTCGAG	2 cut(s)	242, 275
SmiMI	CAYNNNNRTG	1 cut(s)	157
SmlI	CTYRAG	2 cut(s)	242, 275
SmoI	CTYRAG	2 cut(s)	242, 275
SphI	GCATGC	2 cut(s)	216, 347
Sse9I	AATT	2 cut(s)	104, 297
SsiI	CCGC	2 cut(s)	333, 350
SspMI	CTAG	3 cut(s)	141, 288, 418
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	4 cut(s)	108, 243, 259, 276
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	104, 297
TatI	WGTACW	2 cut(s)	235, 324
Tru1I	TTAA	2 cut(s)	180, 296
Tru9I	TTAA	2 cut(s)	180, 296
TscAI	CASTG	2 cut(s)	64, 367
TseI	GCWGC	1 cut(s)	347
TspGWI	ACGGA	2 cut(s)	219, 372
TspRI	CASTG	2 cut(s)	64, 367
VpaK11BI	GGWCC	1 cut(s)	32
XceI	RCATGY	2 cut(s)	216, 347
XhoI	CTCGAG	2 cut(s)	242, 275
XmiI	GTMKAC	1 cut(s)	337
XspI	CTAG	3 cut(s)	141, 288, 418
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.