Rroxscaffold_5G00385490

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018189
Physical Location & Seq
Reverse (-)
64554886 .. 64555538
653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385490.1

Sequence Viewer

Length: 447 bp
ATGGCTATACTCGAACTTGAAGGCTTCTCGAGGAGGAGCCTAGAAAGTTCCTACTTTCACCCTATTGAGCAGTACACGCGCGATCTACTGCATGCAGCGGAGCGCTTCACTGGATCAGGGATATTTTGGGAGTCCGGTGGTCATCTGCATCTGATTGATACACACGAGTACTCCGGTAATGCTTTTGATGTGATGGAGATGGAGATGGAGATGGGGAGGGACTACTCCGGCTGGTTTGTCAAGTACCAAGTTGATCTCATTCCTACCATGGCTGGTTTTCCTGAGAGTAGTCTTTTCTGGTACAATTGTGATTTTGTCGTCTTATTACTTGCTCTAGATGAGCAGAAAGGACATCCAGCTGATGAGGAAGTGTTGATGTTGCATGTTCCTGGTAAAGTTGTCTCTTATAATCTTAGGAGTAAGACTGTCACGACATCTTCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

148

Amino Acids

16.96

Weight (kDa)

4.79

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018189)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0444981
rosa_laevigata RLG00000005780
rosa_multiflora Rmu_sc0011561.1_g000009
rosa_roxburghii Rroxscaffold_5G00385490
rosa_rugosa Rorug04G0357000
rosa_samantha Rh4AG418800 Rh4AG418900 Rh4BG430500 Rh4BG430600 Rh4DG426500 Rh5CG312200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccII CGCG 2 cut(s) 79, 81
AciI CCGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 121
AfaI GTAC 4 cut(s) 74, 170, 245, 302
AfeI AGCGCT 1 cut(s) 104
AgsI TTSAA 1 cut(s) 20
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
Alw26I GTCTC 1 cut(s) 406
AlwI GGATC 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 28
Aor51HI AGCGCT 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 95
AspLEI GCGC 2 cut(s) 81, 105
AsuHPI GGTGA 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 28
BaeI ACNNNNGTAYC 2 cut(s) 292, 325
BauI CACGAG 1 cut(s) 164
BbvI GCAGC 1 cut(s) 107
BccI CCATC 4 cut(s) 187, 193, 199, 205
BciT130I CCWGG 1 cut(s) 390
BcoDI GTCTC 1 cut(s) 406
BfaI CTAG 2 cut(s) 41, 335
BfoI RGCGCY 1 cut(s) 106
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 390
BmeT110I CYCGRG 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 2 cut(s) 134, 173
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bse1I ACTGG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 352
BseMII CTCAG 2 cut(s) 273, 432
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 2 cut(s) 46, 49
BseXI GCAGC 1 cut(s) 107
Bsh1236I CGCG 2 cut(s) 79, 81
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 3 cut(s) 135, 174, 228
BslFI GGGAC 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 406
BsmFI GGGAC 1 cut(s) 233
BsoBI CYCGRG 1 cut(s) 28
Bsp143I GATC 3 cut(s) 82, 113, 253
Bsp19I CCATGG 1 cut(s) 267
BspACI CCGC 1 cut(s) 98
BspCNI CTCAG 2 cut(s) 274, 433
BspFNI CGCG 2 cut(s) 79, 81
BspLI GGNNCC 1 cut(s) 38
BspPI GGATC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 3 cut(s) 82, 113, 253
BssSI CACGAG 1 cut(s) 164
BssT1I CCWWGG 1 cut(s) 267
Bst2BI CACGAG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 1 cut(s) 427
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 3 cut(s) 282, 413, 441
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 2 cut(s) 79, 81
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 2 cut(s) 81, 105
BstKTI GATC 3 cut(s) 85, 116, 256
BstMAI GTCTC 1 cut(s) 406
BstMBI GATC 3 cut(s) 82, 113, 253
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 390
BstNSI RCATGY 2 cut(s) 95, 386
BstSCI CCNGG 1 cut(s) 388
BstUI CGCG 2 cut(s) 79, 81
BstV1I GCAGC 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 2 cut(s) 81, 105
Csp6I GTAC 4 cut(s) 73, 169, 244, 301
CviAII CATG 3 cut(s) 92, 268, 383
CviJI RGCY 6 cut(s) 5, 24, 39, 231, 272, 359
CviKI_1 RGCY 6 cut(s) 5, 24, 39, 231, 272, 359
CviQI GTAC 4 cut(s) 73, 169, 244, 301
DdeI CTNAG 3 cut(s) 282, 413, 441
DpnI GATC 3 cut(s) 84, 115, 255
DpnII GATC 3 cut(s) 82, 113, 253
Eco130I CCWWGG 1 cut(s) 267
Eco47III AGCGCT 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 3 cut(s) 95, 271, 386
FaiI YATR 5 cut(s) 8, 93, 269, 384, 408
FaqI GGGAC 1 cut(s) 233
FatI CATG 3 cut(s) 91, 267, 382
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 2 cut(s) 41, 335
GlaI GCGC 2 cut(s) 80, 104
GluI GCNGC 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 106
HapII CCGG 3 cut(s) 135, 174, 228
HhaI GCGC 2 cut(s) 81, 105
Hin1II CATG 3 cut(s) 95, 271, 386
Hin6I GCGC 2 cut(s) 79, 103
HinP1I GCGC 2 cut(s) 79, 103
HinfI GANTC 1 cut(s) 131
HpaII CCGG 3 cut(s) 135, 174, 228
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 2 cut(s) 153, 442
Hpy188III TCNNGA 4 cut(s) 28, 281, 335, 430
Hpy8I GTNNAC 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4V TGCA 4 cut(s) 91, 95, 148, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 3 cut(s) 282, 413, 441
Hsp92II CATG 3 cut(s) 95, 271, 386
HspAI GCGC 2 cut(s) 79, 103
Kzo9I GATC 3 cut(s) 82, 113, 253
LmnI GCTCC 2 cut(s) 36, 100
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 1 cut(s) 157
MaeI CTAG 2 cut(s) 41, 335
MaeIII GTNAC 1 cut(s) 427
MalI GATC 3 cut(s) 84, 115, 255
MboI GATC 3 cut(s) 82, 113, 253
MboII GAAGA 1 cut(s) 429
MfeI CAATTG 1 cut(s) 304
MluCI AATT 1 cut(s) 304
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 4 cut(s) 24, 27, 210, 358
MspA1I CMGCKG 2 cut(s) 98, 359
MspI CCGG 3 cut(s) 135, 174, 228
MspR9I CCNGG 1 cut(s) 390
MunI CAATTG 1 cut(s) 304
MvaI CCWGG 1 cut(s) 390
MvnI CGCG 2 cut(s) 79, 81
MwoI GCNNNNNNNGC 1 cut(s) 76
NcoI CCATGG 1 cut(s) 267
NdeII GATC 3 cut(s) 82, 113, 253
NlaIII CATG 3 cut(s) 95, 271, 386
NlaIV GGNNCC 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 427
NspI RCATGY 2 cut(s) 95, 386
PaeI GCATGC 1 cut(s) 95
PaeR7I CTCGAG 1 cut(s) 28
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PsiI TTATAA 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 4 cut(s) 74, 170, 245, 302
RsaNI GTAC 4 cut(s) 73, 169, 244, 301
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 3 cut(s) 82, 113, 253
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 390
SetI ASST 1 cut(s) 361
SfaNI GCATC 1 cut(s) 157
Sfr274I CTCGAG 1 cut(s) 28
SlaI CTCGAG 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
SphI GCATGC 1 cut(s) 95
Sse9I AATT 1 cut(s) 304
SsiI CCGC 1 cut(s) 98
SspMI CTAG 2 cut(s) 41, 335
StyD4I CCNGG 1 cut(s) 388
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 427
TaqI TCGA 2 cut(s) 12, 29
TasI AATT 1 cut(s) 304
TatI WGTACW 2 cut(s) 72, 168
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 427
TspRI CASTG 1 cut(s) 115
XbaI TCTAGA 1 cut(s) 334
XceI RCATGY 2 cut(s) 95, 386
XhoI CTCGAG 1 cut(s) 28
XspI CTAG 2 cut(s) 41, 335
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.