RchiOBHm_Chr3g0453021

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017322
Physical Location & Seq
Forward (+)
3557396 .. 3558744
1349 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGGTGTTAGATGTTATTCGGATTCTCATTGAAAGAAAGCAACTGATAGAGGCTGTTAGATTTATAGGCACCTTCAAGTTAACTGACAAGTTCCCCCCTGCACCACTCTTAAACGAGTATGTGGAGGATGCAGAGAAGTGGTGGAGTGAAACTTTCAGTCAAAAGAAATCACTTGATAAAAAGGAAAATGCTGTAGATGACCGGATAACTAATCTAAGAGTTGTGGTTCAATGTGTTGAAGAATACAACCTACAGTCTGAGTATTCACTAGTAGACATTATCAATGACATTTTGGAGCTTGAAAAACTAAAGGAGAATCTGCATTCGGTGGCATCTCTCGACATTATGATGAAAACTAAAGGCCCTGGGAAACTAAAGGAGAAAAGGGAGGTGGTGCTATGTCTTCCATCCTATGATGATAAACAAGAGAAGGAAATCTGGAGGAAACGAAGATTTCGCACATATCGCCGTTGCAGAAAAAAATGTAATCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

164

Amino Acids

19.55

Weight (kDa)

8.96

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 3 - 109 2.8e-25 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 68
AccI GTMKAC 1 cut(s) 273
AgsI TTSAA 5 cut(s) 32, 76, 230, 239, 302
AhlI ACTAGT 1 cut(s) 268
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 1 cut(s) 298
AluI AGCT 1 cut(s) 298
AoxI GGCC 1 cut(s) 361
AspS9I GGNCC 1 cut(s) 362
BanI GGYRCC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 395
BccI CCATC 1 cut(s) 415
BceAI ACGGC 1 cut(s) 453
BciT130I CCWGG 1 cut(s) 366
BcuI ACTAGT 1 cut(s) 268
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 2 cut(s) 192, 251
Bme1390I CCNGG 1 cut(s) 366
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 2 cut(s) 118, 341
BpiI GAAGAC 1 cut(s) 395
BpmI CTGGAG 1 cut(s) 460
BsaJI CCNNGG 2 cut(s) 364, 365
BsaWI WCCGGW 1 cut(s) 201
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 2 cut(s) 364, 365
BseGI GGATG 2 cut(s) 133, 407
BseMII CTCAG 1 cut(s) 249
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 1 cut(s) 363
BshNI GGYRCC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 202
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 1 cut(s) 363
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 70
BspT107I GGYRCC 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 364, 365
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 255
BstDEI CTNAG 2 cut(s) 215, 258
BstF5I GGATG 2 cut(s) 133, 407
BstMWI GCNNNNNNNGC 1 cut(s) 465
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 2 cut(s) 192, 251
BstV2I GAAGAC 1 cut(s) 395
BsuRI GGCC 1 cut(s) 363
BtsCI GGATG 2 cut(s) 133, 407
Cfr13I GGNCC 1 cut(s) 362
CviJI RGCY 3 cut(s) 53, 298, 363
CviKI_1 RGCY 3 cut(s) 53, 298, 363
DdeI CTNAG 2 cut(s) 215, 258
EcoO109I RGGNCCY 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 364
FaiI YATR 6 cut(s) 65, 120, 347, 400, 414, 463
FblI GTMKAC 1 cut(s) 273
FokI GGATG 2 cut(s) 140, 394
FspBI CTAG 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 460
HaeIII GGCC 1 cut(s) 363
HapII CCGG 1 cut(s) 202
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 2 cut(s) 22, 316
HpaI GTTAAC 1 cut(s) 81
HpaII CCGG 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 81, 274
Hpy188I TCNGA 2 cut(s) 21, 259
Hpy188III TCNNGA 2 cut(s) 338, 439
Hpy8I GTNNAC 2 cut(s) 81, 274
HpyAV CCTTC 2 cut(s) 82, 424
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 4 cut(s) 101, 131, 322, 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 465
HpyF3I CTNAG 2 cut(s) 215, 258
KspAI GTTAAC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 5 cut(s) 111, 215, 351, 378, 424
LweI GCATC 2 cut(s) 118, 341
MaeI CTAG 1 cut(s) 269
MboII GAAGA 3 cut(s) 251, 395, 462
MnlI CCTC 4 cut(s) 43, 118, 382, 435
MseI TTAA 2 cut(s) 80, 110
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 1 cut(s) 366
MwoI GCNNNNNNNGC 1 cut(s) 465
NlaIV GGNNCC 1 cut(s) 70
PasI CCCWGGG 1 cut(s) 365
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 2 cut(s) 22, 316
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 2 cut(s) 80, 110
Sau96I GGNCC 1 cut(s) 362
ScrFI CCNGG 1 cut(s) 366
SetI ASST 4 cut(s) 74, 252, 300, 393
SfaNI GCATC 2 cut(s) 118, 341
SfcI CTRYAG 2 cut(s) 192, 251
SmiMI CAYNNNNRTG 1 cut(s) 347
SpeI ACTAGT 1 cut(s) 268
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 339
TfiI GAWTC 2 cut(s) 22, 316
Tru1I TTAA 2 cut(s) 80, 110
Tru9I TTAA 2 cut(s) 80, 110
TspDTI ATGAA 1 cut(s) 365
TspGWI ACGGA 1 cut(s) 480
XmiI GTMKAC 1 cut(s) 273
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.