RchiOBHm_Chr3g0453011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017322
Physical Location & Seq
Forward (+)
3556119 .. 3557393
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42012

Sequence Viewer

Length: 735 bp
ATGGACAAGATAGCCGCGGAGTTACAGGACAGCGTGGTGGACCTGACCCGGCAGCTGACGGAGCTCCAGGCCCGGTATGAGTCGACCCGGAACCAGCAGCGGACCAGAATGCAAGGTCTGGATCAGAGGGAGCTGCAATTGCAGGCCAGAGAGCTGAGGGTGAAGTCGGAGGAGGAAGCGATCGGAGAAAGGTGGAAGTGTCTGGAGATGAGAGAGAGGAATGCGGAGACACATGAGTTGAAGGAATTGGAAAGATTAGAGCATTTGGGTCAGCTTGAGAAATCGGTGGAAGAGAGGGAGAGGTCTTTGGATGAGCTACATGAGTCGTTGGAGGAGCAGAGGAAGCATTCCAGGGCACTGCAGGAGGTGTTGGAAGAGCATTTGGGGTCGGTGGGCGGGGGGCTGAGGGTGAAGCTGAGGCAGTTTGAAGAGAAGGCTAGAGAAATTGGATTGGAGCTGAGTGGTGGTGATGGAGGATTGGAGTTGAAGAGAGATGAATTGGTGGGTTGCGAAATGGGAGGTGGTTTGGATGCAGAGAAGGTTGTGAAGCTTATTGGGGTGATTTGTCAGCGTGAAGAGATTATGAAGTTATGTCAGGGATTTGATTCTGGGGATAAGATCCACGGTAATTGTTTCGAGAATTTGGTTTTGGTTGTGTGCTGTTTGTGTTTCGCATTGAGTAGTGATGACTTCTGTTTGCAATGTAGAAATATTTGGAGCTATAGTTGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

28.09

Weight (kDa)

5.0

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 83
AccII CGCG 1 cut(s) 17
AciI CCGC 5 cut(s) 15, 17, 100, 224, 396
AclWI GGATC 2 cut(s) 129, 613
AcsI RAATTY 1 cut(s) 640
AgsI TTSAA 3 cut(s) 241, 428, 487
AjnI CCWGG 2 cut(s) 66, 350
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 2 cut(s) 129, 613
AoxI GGCC 2 cut(s) 69, 144
ApeKI GCWGC 3 cut(s) 52, 97, 133
ApoI RAATTY 1 cut(s) 640
AspS9I GGNCC 3 cut(s) 40, 70, 102
AsuC2I CCSGG 3 cut(s) 49, 73, 88
AsuHPI GGTGA 4 cut(s) 172, 421, 479, 571
AvaII GGWCC 2 cut(s) 40, 102
BaeGI GKGCMC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 66
BbvCI CCTCAGC 3 cut(s) 155, 404, 416
BbvI GCAGC 3 cut(s) 64, 109, 120
BccI CCATC 1 cut(s) 464
BciT130I CCWGG 2 cut(s) 68, 352
BcnI CCSGG 3 cut(s) 49, 73, 88
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 1 cut(s) 438
BfmI CTRYAG 2 cut(s) 359, 721
BisI GCNGC 4 cut(s) 15, 53, 98, 134
BlsI GCNGC 4 cut(s) 16, 54, 99, 135
Bme1390I CCNGG 5 cut(s) 49, 68, 73, 88, 352
Bme18I GGWCC 2 cut(s) 40, 102
BmgT120I GGNCC 3 cut(s) 40, 70, 102
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 5 cut(s) 49, 68, 73, 88, 352
BmsI GCATC 1 cut(s) 520
BpmI CTGGAG 2 cut(s) 50, 224
Bpu10I CCTNAGC 3 cut(s) 155, 404, 416
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 3 cut(s) 49, 73, 88
BsaJI CCNNGG 3 cut(s) 15, 351, 622
BsaXI ACNNNNNCTCC 1 cut(s) 709
Bse3DI GCAATG 1 cut(s) 707
BseBI CCWGG 2 cut(s) 68, 352
BseDI CCNNGG 3 cut(s) 15, 351, 622
BseGI GGATG 2 cut(s) 316, 535
BseMI GCAATG 1 cut(s) 707
BseMII CTCAG 4 cut(s) 146, 395, 407, 449
BseRI GAGGAG 2 cut(s) 185, 347
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 3 cut(s) 64, 109, 120
Bsh1236I CGCG 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 2 cut(s) 71, 146
BsiEI CGRYCG 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 3 cut(s) 49, 73, 88
BsmAI GTCTC 1 cut(s) 221
BsmI GAATGC 3 cut(s) 114, 226, 346
BsnI GGCC 2 cut(s) 71, 146
Bsp1286I GDGCHC 2 cut(s) 66, 358
Bsp143I GATC 3 cut(s) 121, 180, 618
BspACI CCGC 5 cut(s) 15, 17, 100, 224, 396
BspANI GGCC 2 cut(s) 71, 146
BspCNI CTCAG 4 cut(s) 147, 396, 408, 450
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 92
BspMAI CTGCAG 1 cut(s) 363
BspPI GGATC 2 cut(s) 129, 613
BspQI GCTCTTC 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 707
BssECI CCNNGG 3 cut(s) 15, 351, 622
BssMI GATC 3 cut(s) 121, 180, 618
Bst2UI CCWGG 2 cut(s) 68, 352
Bst4CI ACNGT 1 cut(s) 626
Bst6I CTCTTC 5 cut(s) 285, 369, 423, 482, 570
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 4 cut(s) 155, 404, 416, 458
BstDSI CCRYGG 2 cut(s) 15, 622
BstF5I GGATG 2 cut(s) 316, 535
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 3 cut(s) 124, 183, 621
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 3 cut(s) 121, 180, 618
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 3 cut(s) 61, 139, 343
BstNI CCWGG 2 cut(s) 68, 352
BstSCI CCNGG 5 cut(s) 47, 66, 71, 86, 350
BstSFI CTRYAG 2 cut(s) 359, 721
BstSLI GKGCMC 1 cut(s) 358
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 3 cut(s) 64, 109, 120
BstX2I RGATCY 1 cut(s) 618
BstYI RGATCY 1 cut(s) 618
BsuRI GGCC 2 cut(s) 71, 146
BtgI CCRYGG 2 cut(s) 15, 622
BtsCI GGATG 2 cut(s) 316, 535
BtsI GCAGTG 1 cut(s) 356
BtsIMutI CAGTG 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 144
Cfr13I GGNCC 3 cut(s) 40, 70, 102
Cfr42I CCGCGG 1 cut(s) 18
CspCI CAANNNNNGTGG 2 cut(s) 611, 646
CviAII CATG 2 cut(s) 233, 320
DdeI CTNAG 4 cut(s) 155, 404, 416, 458
DpnI GATC 3 cut(s) 123, 182, 620
DpnII GATC 3 cut(s) 121, 180, 618
Eam1104I CTCTTC 5 cut(s) 285, 369, 423, 482, 570
EarI CTCTTC 5 cut(s) 285, 369, 423, 482, 570
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 40, 102
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 66, 350
EcoT38I GRGCYC 1 cut(s) 66
FaeI CATG 2 cut(s) 236, 323
FaiI YATR 6 cut(s) 78, 234, 321, 584, 592, 723
FatI CATG 2 cut(s) 232, 319
FauI CCCGC 1 cut(s) 389
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 4 cut(s) 15, 53, 98, 134
FokI GGATG 2 cut(s) 323, 542
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 4 cut(s) 15, 53, 98, 134
FspBI CTAG 1 cut(s) 438
GluI GCNGC 4 cut(s) 15, 53, 98, 134
GsuI CTGGAG 2 cut(s) 50, 224
HaeIII GGCC 2 cut(s) 71, 146
HapII CCGG 3 cut(s) 49, 73, 88
Hin1II CATG 2 cut(s) 236, 323
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HindIII AAGCTT 1 cut(s) 548
HinfI GANTC 3 cut(s) 80, 323, 605
HpaII CCGG 3 cut(s) 49, 73, 88
HphI GGTGA 4 cut(s) 172, 421, 479, 571
Hpy166II GTNNAC 2 cut(s) 40, 84
Hpy188I TCNGA 3 cut(s) 126, 169, 185
Hpy188III TCNNGA 3 cut(s) 119, 203, 637
Hpy8I GTNNAC 2 cut(s) 40, 84
HpyAV CCTTC 3 cut(s) 235, 427, 532
HpyCH4III ACNGT 1 cut(s) 626
HpyCH4V TGCA 6 cut(s) 112, 136, 142, 361, 533, 700
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 139, 343
HpyF3I CTNAG 4 cut(s) 155, 404, 416, 458
Hsp92II CATG 2 cut(s) 236, 323
KspI CCGCGG 1 cut(s) 18
Kzo9I GATC 3 cut(s) 121, 180, 618
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 6 cut(s) 61, 69, 130, 334, 454, 717
Lsp1109I GCAGC 3 cut(s) 64, 109, 120
LweI GCATC 1 cut(s) 520
MaeI CTAG 1 cut(s) 438
MaeIII GTNAC 1 cut(s) 21
MalI GATC 3 cut(s) 123, 182, 620
MboI GATC 3 cut(s) 121, 180, 618
MboII GAAGA 5 cut(s) 302, 386, 440, 499, 587
MfeI CAATTG 1 cut(s) 137
MflI RGATCY 1 cut(s) 618
MhlI GDGCHC 2 cut(s) 66, 358
MluCI AATT 6 cut(s) 137, 245, 444, 497, 628, 640
MlyI GAGTC 2 cut(s) 89, 332
MmeI TCCRAC 3 cut(s) 147, 309, 351
MspA1I CMGCKG 3 cut(s) 17, 55, 100
MspI CCGG 3 cut(s) 49, 73, 88
MspR9I CCNGG 5 cut(s) 49, 68, 73, 88, 352
MunI CAATTG 1 cut(s) 137
Mva1269I GAATGC 3 cut(s) 114, 226, 346
MvaI CCWGG 2 cut(s) 68, 352
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 61, 139, 343
NciI CCSGG 3 cut(s) 49, 73, 88
NdeII GATC 3 cut(s) 121, 180, 618
NlaIII CATG 2 cut(s) 236, 323
NlaIV GGNNCC 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 3 cut(s) 114, 226, 346
PfeI GAWTC 1 cut(s) 605
PkrI GCNGC 4 cut(s) 16, 54, 99, 135
Ple19I CGATCG 1 cut(s) 183
PleI GAGTC 2 cut(s) 88, 331
PpsI GAGTC 2 cut(s) 88, 331
Psp124BI GAGCTC 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 66, 350
PspGI CCWGG 2 cut(s) 66, 350
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 3 cut(s) 40, 70, 102
PstI CTGCAG 1 cut(s) 363
PsuI RGATCY 1 cut(s) 618
PvuI CGATCG 1 cut(s) 183
PvuII CAGCTG 1 cut(s) 55
SacI GAGCTC 1 cut(s) 66
SacII CCGCGG 1 cut(s) 18
SalI GTCGAC 1 cut(s) 82
SapI GCTCTTC 1 cut(s) 369
SatI GCNGC 4 cut(s) 15, 53, 98, 134
Sau3AI GATC 3 cut(s) 121, 180, 618
Sau96I GGNCC 3 cut(s) 40, 70, 102
SchI GAGTC 2 cut(s) 89, 332
ScrFI CCNGG 5 cut(s) 49, 68, 73, 88, 352
SduI GDGCHC 2 cut(s) 66, 358
SfaNI GCATC 1 cut(s) 520
SfcI CTRYAG 2 cut(s) 359, 721
Sfr303I CCGCGG 1 cut(s) 18
SgrBI CCGCGG 1 cut(s) 18
SinI GGWCC 2 cut(s) 40, 102
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 6 cut(s) 137, 245, 444, 497, 628, 640
SsiI CCGC 5 cut(s) 15, 17, 100, 224, 396
SspI AATATT 1 cut(s) 712
SspMI CTAG 1 cut(s) 438
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 5 cut(s) 47, 66, 71, 86, 350
TaaI ACNGT 1 cut(s) 626
TaqI TCGA 2 cut(s) 83, 636
TasI AATT 6 cut(s) 137, 245, 444, 497, 628, 640
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 605
TscAI CASTG 1 cut(s) 363
TseI GCWGC 3 cut(s) 52, 97, 133
TspDTI ATGAA 2 cut(s) 510, 599
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 363
VpaK11BI GGWCC 2 cut(s) 40, 102
XapI RAATTY 1 cut(s) 640
XmiI GTMKAC 1 cut(s) 83
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.