Rh3AG047600

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0017322
Physical Location & Seq
Forward (+)
3356320 .. 3358813
2494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG047600.1

Sequence Viewer

Length: 1110 bp
ATGGACAAGATAGCCGCGGAGTTACAGGACAGCGTGGTGGACCTGACCCGGCAGCTGACGGAGCTCCAGGCCCGGTATGAGTCGACCCGGAACCAGCAGCGGACCAGAATGCAAGGTCTGGATCAGAGGGAGCTGCAATTGCAGGCCAGAGAGCTGAGGGTGAAGTCGGAGGAGGAATCGATCCGGGAACGGTGGAAGTGTCTGGAGATGAGAGAGAGGAATGCGGAGACACATGAGTTGAAGGAATTGGAAAGATTAGAGCATTTGGGTCAGCTTGAGAAATCGGTGGAAGAGAGGGAGAGGTCTTTGGATGAGCTACATGAGTCGTTGGAGGAGCAGAGGAAGCATTCCAGGGCACTACAGGAGGTGTTGGAAGAGCATTTGGGGTCGGTGGGCGGGGGGCTGAGGGTGAAGCTGAGGCAGTTTGAAGAGAAGGCTAGAGAAATTGGATTGGAGCTGAGTGGTGGTGATGGAGGATTGGAGTTGAAGAGAGGTGAATTGGTGGGTTGCGAAATGGGGGGTGGTTTGGATGCAGAGAAGGTTGTGAAGCTTATTGGGGTGATTTGTCAGCGTGAAGAGATTATGAAGTTATGTCAGGGATTTGATTCTGGAGATAAGATCCACGAAGTTATTCGGATTCTCATTGAAAGAAAGCAACTGATAGAGGCTGTTAGATTTATATGCACCTTCAAGTTAACTGACAAGTTCCCCCCTGCACCACTCTTAAACGAGTATGTGGAGGACGCAGAGAAGTGGTGGAGTGAAACTTTCAGTCAAAAGAAATCACTTGATAAAAAGGAAAATGCTGTAGATGACCGAATAACTAATCTAAGAGTTGTGGTTCAATGTGTTGAAGAATACAACCTACAGTCTGAGTATTCACTAGTAGACATTATCAATGACATTTTGGAGCTTGAAAAACTAAAGGAGAATCTGCATTCGGTGGCATCTCTCGACATTATGATGAAAACTAAAGGGCCCGGAAAACTAAAGGAGAAAAGGGAGGTGGTGCTATGTCTTCCATCCCTTGATGATAAACAAGAGAAGGAATTCTGGAGGAAACGAAGATTTCGCACATATCGCCGTTGCAGAAAAAAATGTAATCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

369

Amino Acids

43.24

Weight (kDa)

5.89

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 176 - 313 1.8e-31 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 83, 888
AccII CGCG 1 cut(s) 17
AciI CCGC 5 cut(s) 15, 17, 100, 224, 396
AclWI GGATC 3 cut(s) 129, 175, 613
AcsI RAATTY 1 cut(s) 1049
AgsI TTSAA 8 cut(s) 241, 428, 487, 647, 691, 845, 854, 917
AhlI ACTAGT 1 cut(s) 883
AjnI CCWGG 2 cut(s) 66, 350
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 3 cut(s) 129, 175, 613
AoxI GGCC 3 cut(s) 69, 144, 977
ApaI GGGCCC 1 cut(s) 981
ApeKI GCWGC 3 cut(s) 52, 97, 133
ApoI RAATTY 1 cut(s) 1049
Asp700I GAANNNNTTC 2 cut(s) 630, 1049
AspS9I GGNCC 5 cut(s) 40, 70, 102, 977, 978
AsuC2I CCSGG 5 cut(s) 49, 73, 88, 185, 981
AsuHPI GGTGA 5 cut(s) 172, 421, 479, 506, 571
AvaII GGWCC 2 cut(s) 40, 102
BaeGI GKGCMC 2 cut(s) 358, 981
BanII GRGCYC 2 cut(s) 66, 981
BbsI GAAGAC 1 cut(s) 1010
Bbv12I GWGCWC 1 cut(s) 66
BbvCI CCTCAGC 3 cut(s) 155, 404, 416
BbvI GCAGC 3 cut(s) 64, 109, 120
BccI CCATC 2 cut(s) 464, 1030
BceAI ACGGC 1 cut(s) 1068
BciT130I CCWGG 2 cut(s) 68, 352
BcnI CCSGG 5 cut(s) 49, 73, 88, 185, 981
BcoDI GTCTC 1 cut(s) 221
BcuI ACTAGT 1 cut(s) 883
BfaI CTAG 2 cut(s) 438, 884
BfmI CTRYAG 3 cut(s) 359, 807, 866
BisI GCNGC 4 cut(s) 15, 53, 98, 134
BlsI GCNGC 4 cut(s) 16, 54, 99, 135
Bme1390I CCNGG 7 cut(s) 49, 68, 73, 88, 185, 352, 981
Bme18I GGWCC 2 cut(s) 40, 102
BmgT120I GGNCC 5 cut(s) 40, 70, 102, 977, 978
BmiI GGNNCC 2 cut(s) 92, 979
BmrFI CCNGG 7 cut(s) 49, 68, 73, 88, 185, 352, 981
BmsI GCATC 2 cut(s) 520, 956
BpiI GAAGAC 1 cut(s) 1010
BpmI CTGGAG 4 cut(s) 50, 224, 630, 1075
Bpu10I CCTNAGC 3 cut(s) 155, 404, 416
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 5 cut(s) 49, 73, 88, 185, 981
Bsa29I ATCGAT 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 15, 351
BseBI CCWGG 2 cut(s) 68, 352
BseCI ATCGAT 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 15, 351
BseGI GGATG 3 cut(s) 316, 535, 1022
BseMII CTCAG 5 cut(s) 146, 395, 407, 449, 864
BseRI GAGGAG 2 cut(s) 185, 347
BseSI GKGCMC 2 cut(s) 358, 981
BseXI GCAGC 3 cut(s) 64, 109, 120
BsgI GTGCAG 1 cut(s) 699
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 3 cut(s) 71, 146, 979
BshVI ATCGAT 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 5 cut(s) 49, 73, 88, 184, 981
BsmAI GTCTC 1 cut(s) 221
BsmI GAATGC 4 cut(s) 114, 226, 346, 937
BsnI GGCC 3 cut(s) 71, 146, 979
Bsp120I GGGCCC 1 cut(s) 977
Bsp1286I GDGCHC 3 cut(s) 66, 358, 981
Bsp143I GATC 3 cut(s) 121, 180, 618
BspACI CCGC 5 cut(s) 15, 17, 100, 224, 396
BspANI GGCC 3 cut(s) 71, 146, 979
BspCNI CTCAG 5 cut(s) 147, 396, 408, 450, 865
BspDI ATCGAT 1 cut(s) 179
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 2 cut(s) 92, 979
BspPI GGATC 3 cut(s) 129, 175, 613
BspQI GCTCTTC 1 cut(s) 369
BssECI CCNNGG 2 cut(s) 15, 351
BssMI GATC 3 cut(s) 121, 180, 618
Bst2UI CCWGG 2 cut(s) 68, 352
Bst4CI ACNGT 2 cut(s) 192, 870
Bst6I CTCTTC 5 cut(s) 285, 369, 423, 482, 570
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 6 cut(s) 155, 404, 416, 458, 830, 873
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 3 cut(s) 316, 535, 1022
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 3 cut(s) 124, 183, 621
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 3 cut(s) 121, 180, 618
BstMWI GCNNNNNNNGC 4 cut(s) 61, 139, 343, 1080
BstNI CCWGG 2 cut(s) 68, 352
BstSCI CCNGG 7 cut(s) 47, 66, 71, 86, 183, 350, 979
BstSFI CTRYAG 3 cut(s) 359, 807, 866
BstSLI GKGCMC 2 cut(s) 358, 981
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 3 cut(s) 64, 109, 120
BstV2I GAAGAC 1 cut(s) 1010
BstX2I RGATCY 1 cut(s) 618
BstYI RGATCY 1 cut(s) 618
Bsu15I ATCGAT 1 cut(s) 179
BsuRI GGCC 3 cut(s) 71, 146, 979
BsuTUI ATCGAT 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 3 cut(s) 316, 535, 1022
Cac8I GCNNGC 1 cut(s) 144
Cfr13I GGNCC 5 cut(s) 40, 70, 102, 977, 978
Cfr42I CCGCGG 1 cut(s) 18
ClaI ATCGAT 1 cut(s) 179
CseI GACGC 1 cut(s) 752
CviAII CATG 2 cut(s) 233, 320
DdeI CTNAG 6 cut(s) 155, 404, 416, 458, 830, 873
DpnI GATC 3 cut(s) 123, 182, 620
DpnII GATC 3 cut(s) 121, 180, 618
Eam1104I CTCTTC 5 cut(s) 285, 369, 423, 482, 570
EarI CTCTTC 5 cut(s) 285, 369, 423, 482, 570
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 2 cut(s) 66, 981
Eco47I GGWCC 2 cut(s) 40, 102
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 977
EcoRI GAATTC 1 cut(s) 1049
EcoRII CCWGG 2 cut(s) 66, 350
EcoT38I GRGCYC 2 cut(s) 66, 981
FaeI CATG 2 cut(s) 236, 323
FatI CATG 2 cut(s) 232, 319
FauI CCCGC 1 cut(s) 389
FblI GTMKAC 2 cut(s) 83, 888
Fnu4HI GCNGC 4 cut(s) 15, 53, 98, 134
FokI GGATG 3 cut(s) 323, 542, 1009
FriOI GRGCYC 2 cut(s) 66, 981
Fsp4HI GCNGC 4 cut(s) 15, 53, 98, 134
FspBI CTAG 2 cut(s) 438, 884
GluI GCNGC 4 cut(s) 15, 53, 98, 134
GsuI CTGGAG 4 cut(s) 50, 224, 630, 1075
HaeIII GGCC 3 cut(s) 71, 146, 979
HapII CCGG 5 cut(s) 49, 73, 88, 184, 981
HgaI GACGC 1 cut(s) 752
Hin1II CATG 2 cut(s) 236, 323
HincII GTYRAC 2 cut(s) 84, 696
HindII GTYRAC 2 cut(s) 84, 696
HindIII AAGCTT 1 cut(s) 548
HinfI GANTC 6 cut(s) 80, 176, 323, 605, 637, 931
HpaI GTTAAC 1 cut(s) 696
HpaII CCGG 5 cut(s) 49, 73, 88, 184, 981
HphI GGTGA 5 cut(s) 172, 421, 479, 506, 571
Hpy166II GTNNAC 4 cut(s) 40, 84, 696, 889
Hpy188I TCNGA 4 cut(s) 126, 169, 636, 874
Hpy188III TCNNGA 5 cut(s) 119, 203, 609, 953, 1054
Hpy8I GTNNAC 4 cut(s) 40, 84, 696, 889
HpyAV CCTTC 5 cut(s) 235, 427, 532, 697, 1039
HpyCH4III ACNGT 2 cut(s) 192, 870
HpyCH4V TGCA 8 cut(s) 112, 136, 142, 533, 684, 716, 937, 1089
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 139, 343, 1080
HpyF3I CTNAG 6 cut(s) 155, 404, 416, 458, 830, 873
Hsp92II CATG 2 cut(s) 236, 323
KspAI GTTAAC 1 cut(s) 696
KspI CCGCGG 1 cut(s) 18
Kzo9I GATC 3 cut(s) 121, 180, 618
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 6 cut(s) 61, 69, 130, 334, 454, 910
Lsp1109I GCAGC 3 cut(s) 64, 109, 120
LweI GCATC 2 cut(s) 520, 956
MaeI CTAG 2 cut(s) 438, 884
MaeIII GTNAC 1 cut(s) 21
MalI GATC 3 cut(s) 123, 182, 620
MboI GATC 3 cut(s) 121, 180, 618
MboII GAAGA 8 cut(s) 302, 386, 440, 499, 587, 866, 1010, 1077
MfeI CAATTG 1 cut(s) 137
MflI RGATCY 1 cut(s) 618
MhlI GDGCHC 3 cut(s) 66, 358, 981
MluCI AATT 5 cut(s) 137, 245, 444, 497, 1049
MlyI GAGTC 2 cut(s) 89, 332
MmeI TCCRAC 3 cut(s) 147, 309, 351
MroXI GAANNNNTTC 2 cut(s) 630, 1049
MseI TTAA 2 cut(s) 695, 725
MslI CAYNNNNRTG 1 cut(s) 962
MspA1I CMGCKG 3 cut(s) 17, 55, 100
MspI CCGG 5 cut(s) 49, 73, 88, 184, 981
MspR9I CCNGG 7 cut(s) 49, 68, 73, 88, 185, 352, 981
MunI CAATTG 1 cut(s) 137
Mva1269I GAATGC 4 cut(s) 114, 226, 346, 937
MvaI CCWGG 2 cut(s) 68, 352
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 4 cut(s) 61, 139, 343, 1080
NciI CCSGG 5 cut(s) 49, 73, 88, 185, 981
NdeII GATC 3 cut(s) 121, 180, 618
NlaIII CATG 2 cut(s) 236, 323
NlaIV GGNNCC 2 cut(s) 92, 979
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 4 cut(s) 114, 226, 346, 937
PdmI GAANNNNTTC 2 cut(s) 630, 1049
PfeI GAWTC 4 cut(s) 176, 605, 637, 931
PfoI TCCNGGA 1 cut(s) 183
PkrI GCNGC 4 cut(s) 16, 54, 99, 135
PleI GAGTC 2 cut(s) 88, 331
PpsI GAGTC 2 cut(s) 88, 331
Psp124BI GAGCTC 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 66, 350
PspGI CCWGG 2 cut(s) 66, 350
PspN4I GGNNCC 2 cut(s) 92, 979
PspOMI GGGCCC 1 cut(s) 977
PspPI GGNCC 5 cut(s) 40, 70, 102, 977, 978
PsuI RGATCY 1 cut(s) 618
PvuII CAGCTG 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 962
SacI GAGCTC 1 cut(s) 66
SacII CCGCGG 1 cut(s) 18
SalI GTCGAC 1 cut(s) 82
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 2 cut(s) 695, 725
SatI GCNGC 4 cut(s) 15, 53, 98, 134
Sau3AI GATC 3 cut(s) 121, 180, 618
Sau96I GGNCC 5 cut(s) 40, 70, 102, 977, 978
SchI GAGTC 2 cut(s) 89, 332
ScrFI CCNGG 7 cut(s) 49, 68, 73, 88, 185, 352, 981
SduI GDGCHC 3 cut(s) 66, 358, 981
SfaNI GCATC 2 cut(s) 520, 956
SfcI CTRYAG 3 cut(s) 359, 807, 866
Sfr303I CCGCGG 1 cut(s) 18
SgrBI CCGCGG 1 cut(s) 18
SinI GGWCC 2 cut(s) 40, 102
SmiMI CAYNNNNRTG 1 cut(s) 962
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SpeI ACTAGT 1 cut(s) 883
Sse9I AATT 5 cut(s) 137, 245, 444, 497, 1049
SsiI CCGC 5 cut(s) 15, 17, 100, 224, 396
SspMI CTAG 2 cut(s) 438, 884
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 7 cut(s) 47, 66, 71, 86, 183, 350, 979
TaaI ACNGT 2 cut(s) 192, 870
TaqI TCGA 3 cut(s) 83, 179, 954
TaqII GACCGA 1 cut(s) 831
TasI AATT 5 cut(s) 137, 245, 444, 497, 1049
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 4 cut(s) 176, 605, 637, 931
Tru1I TTAA 2 cut(s) 695, 725
Tru9I TTAA 2 cut(s) 695, 725
TseI GCWGC 3 cut(s) 52, 97, 133
TspDTI ATGAA 2 cut(s) 599, 980
TspGWI ACGGA 2 cut(s) 74, 1095
VpaK11BI GGWCC 2 cut(s) 40, 102
XapI RAATTY 1 cut(s) 1049
XmiI GTMKAC 2 cut(s) 83, 888
XmnI GAANNNNTTC 2 cut(s) 630, 1049
XspI CTAG 2 cut(s) 438, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.