Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023319.1

Orthogroup ID

OG0017322

Physical Location & Seq

Genomic Coordinates Forward (+)

15576 .. 17506

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023319.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atggacaagatagccgcggagttacaggacagcgtggtggacttgacccggcagttgacggagctccaggcccggtatgagtcgacccggaaccagcagcggaccagaatgcaaggtctggatcagagggagctgcaattgcaggccagagagctgagggtgaagtcggaggaggaagcgatcggagaaaggtggaagtgtctggagatgagagagaggaatgcggagacacatgagttgaaggaattggaaagattagagcatttgggtcagcttgagaaatcggtggaagagagggagaggtctttggatgagctacatgagtcgttggaggagcagaggaagcattccagggcactgcaggaggtgttggaagagcatttggggtcggtgggcggggggctgagggtgaagctgaggcagtttgaagagaaggctagagaaattggattggagctgagtggtggtgatggaggattggagttgaagagagatgaattggtgggttgcgaaatgggaggtggtttggatgcagagaaggttgtgaagcttattggggtgatttgtcagcgtgaagagattatgaatttatgtcggggatttgattctggagataagatccacgatgttattcggattctcattgaaagaaagcaactgatagaggctgttagatttatatgcaccttcaagttaactgacaagttcccccctgcaccactcttaaacgagtatgtggaggatgcagagaagtggtggagtgaaactttcagtcaaaagaaatcacttgataaaaaggaaaatgctgtagatgaccggataactaatctaagagttgtggttcaatgtgttgaagaatacaacctacagtctgagtattcactagtagacattatcaatgacattttggagcttgaaaaactaaaggagaatctgcattcggtggcatctctcgacattatgataaaaactaaagggcctgggaaactaaaggagaaaagggaggtggtgctatgtcttccatcctatgatgataaacaagagaaggaaatctggaggaaacgaagatttcgcacatatcgccgttgcagaaaaaaatgtaatccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Frigida

Protein Analysis

369

Amino Acids

43.18

Weight (kDa)

5.69

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017322)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04400
rosa_chinensis	RchiOBHm_Chr3g0453011 RchiOBHm_Chr3g0453021
rosa_laevigata	RLG00000025550
rosa_multiflora	Rmu_co8374863.1_g000001 Rmu_sc0005888.1_g000002 Rmu_sc0023319.1_g000002
rosa_rugosa	Rorug02G0645400
rosa_samantha	Rh3AG047600 Rh3BG050100 Rh3CG048900 Rh3DG049700 Rh6BG387000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	83, 888
AccII	CGCG	1 cut(s)	17
AciI	CCGC	5 cut(s)	15, 17, 100, 224, 396
AclWI	GGATC	2 cut(s)	129, 613
AcsI	RAATTY	1 cut(s)	586
AgsI	TTSAA	8 cut(s)	241, 428, 487, 647, 691, 845, 854, 917
AhlI	ACTAGT	1 cut(s)	883
AjnI	CCWGG	3 cut(s)	66, 350, 979
AluBI	AGCT	9 cut(s)	64, 133, 154, 274, 316, 415, 457, 550, 913
AluI	AGCT	9 cut(s)	64, 133, 154, 274, 316, 415, 457, 550, 913
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	129, 613
AoxI	GGCC	3 cut(s)	69, 144, 977
ApeKI	GCWGC	2 cut(s)	97, 133
ApoI	RAATTY	1 cut(s)	586
AspS9I	GGNCC	3 cut(s)	70, 102, 977
AsuC2I	CCSGG	3 cut(s)	49, 73, 88
AsuHPI	GGTGA	4 cut(s)	172, 421, 479, 571
AvaII	GGWCC	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	1010
Bbv12I	GWGCWC	1 cut(s)	66
BbvCI	CCTCAGC	3 cut(s)	155, 404, 416
BbvI	GCAGC	2 cut(s)	109, 120
BccI	CCATC	2 cut(s)	464, 1030
BceAI	ACGGC	1 cut(s)	1068
BciT130I	CCWGG	3 cut(s)	68, 352, 981
BcnI	CCSGG	3 cut(s)	49, 73, 88
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	1 cut(s)	883
BfaI	CTAG	2 cut(s)	438, 884
BfmI	CTRYAG	3 cut(s)	359, 807, 866
BisI	GCNGC	3 cut(s)	15, 98, 134
BlsI	GCNGC	3 cut(s)	16, 99, 135
Bme1390I	CCNGG	6 cut(s)	49, 68, 73, 88, 352, 981
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	3 cut(s)	70, 102, 977
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	6 cut(s)	49, 68, 73, 88, 352, 981
BmsI	GCATC	3 cut(s)	520, 733, 956
BpiI	GAAGAC	1 cut(s)	1010
BpmI	CTGGAG	4 cut(s)	50, 224, 630, 1075
Bpu10I	CCTNAGC	3 cut(s)	155, 404, 416
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	3 cut(s)	49, 73, 88
BsaJI	CCNNGG	3 cut(s)	15, 351, 980
BsaWI	WCCGGW	1 cut(s)	816
BseBI	CCWGG	3 cut(s)	68, 352, 981
BseDI	CCNNGG	3 cut(s)	15, 351, 980
BseGI	GGATG	4 cut(s)	316, 535, 748, 1022
BseMII	CTCAG	5 cut(s)	146, 395, 407, 449, 864
BseRI	GAGGAG	2 cut(s)	185, 347
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	2 cut(s)	109, 120
BsgI	GTGCAG	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	17
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	71, 146, 979
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	4 cut(s)	49, 73, 88, 817
BsmAI	GTCTC	1 cut(s)	221
BsmI	GAATGC	4 cut(s)	114, 226, 346, 937
BsnI	GGCC	3 cut(s)	71, 146, 979
Bsp1286I	GDGCHC	2 cut(s)	66, 358
Bsp143I	GATC	3 cut(s)	121, 180, 618
BspACI	CCGC	5 cut(s)	15, 17, 100, 224, 396
BspANI	GGCC	3 cut(s)	71, 146, 979
BspCNI	CTCAG	5 cut(s)	147, 396, 408, 450, 865
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	92
BspMAI	CTGCAG	1 cut(s)	363
BspPI	GGATC	2 cut(s)	129, 613
BspQI	GCTCTTC	1 cut(s)	369
BssECI	CCNNGG	3 cut(s)	15, 351, 980
BssMI	GATC	3 cut(s)	121, 180, 618
Bst2UI	CCWGG	3 cut(s)	68, 352, 981
Bst4CI	ACNGT	1 cut(s)	870
Bst6I	CTCTTC	5 cut(s)	285, 369, 423, 482, 570
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	6 cut(s)	155, 404, 416, 458, 830, 873
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	4 cut(s)	316, 535, 748, 1022
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	3 cut(s)	124, 183, 621
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	3 cut(s)	121, 180, 618
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 343, 1080
BstNI	CCWGG	3 cut(s)	68, 352, 981
BstSCI	CCNGG	6 cut(s)	47, 66, 71, 86, 350, 979
BstSFI	CTRYAG	3 cut(s)	359, 807, 866
BstSLI	GKGCMC	1 cut(s)	358
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	109, 120
BstV2I	GAAGAC	1 cut(s)	1010
BstX2I	RGATCY	1 cut(s)	618
BstYI	RGATCY	1 cut(s)	618
BsuRI	GGCC	3 cut(s)	71, 146, 979
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	4 cut(s)	316, 535, 748, 1022
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	144
Cfr13I	GGNCC	3 cut(s)	70, 102, 977
Cfr42I	CCGCGG	1 cut(s)	18
CviAII	CATG	2 cut(s)	233, 320
DdeI	CTNAG	6 cut(s)	155, 404, 416, 458, 830, 873
DpnI	GATC	3 cut(s)	123, 182, 620
DpnII	GATC	3 cut(s)	121, 180, 618
Eam1104I	CTCTTC	5 cut(s)	285, 369, 423, 482, 570
EarI	CTCTTC	5 cut(s)	285, 369, 423, 482, 570
Ecl136II	GAGCTC	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	977
EcoRII	CCWGG	3 cut(s)	66, 350, 979
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	2 cut(s)	236, 323
FatI	CATG	2 cut(s)	232, 319
FauI	CCCGC	1 cut(s)	389
FblI	GTMKAC	2 cut(s)	83, 888
Fnu4HI	GCNGC	3 cut(s)	15, 98, 134
FokI	GGATG	4 cut(s)	323, 542, 755, 1009
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	3 cut(s)	15, 98, 134
FspBI	CTAG	2 cut(s)	438, 884
GluI	GCNGC	3 cut(s)	15, 98, 134
GsuI	CTGGAG	4 cut(s)	50, 224, 630, 1075
HaeIII	GGCC	3 cut(s)	71, 146, 979
HapII	CCGG	4 cut(s)	49, 73, 88, 817
Hin1II	CATG	2 cut(s)	236, 323
HincII	GTYRAC	3 cut(s)	57, 84, 696
HindII	GTYRAC	3 cut(s)	57, 84, 696
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	5 cut(s)	80, 323, 605, 637, 931
HpaI	GTTAAC	1 cut(s)	696
HpaII	CCGG	4 cut(s)	49, 73, 88, 817
HphI	GGTGA	4 cut(s)	172, 421, 479, 571
Hpy166II	GTNNAC	5 cut(s)	40, 57, 84, 696, 889
Hpy188I	TCNGA	5 cut(s)	126, 169, 185, 636, 874
Hpy188III	TCNNGA	5 cut(s)	119, 203, 609, 953, 1054
Hpy8I	GTNNAC	5 cut(s)	40, 57, 84, 696, 889
HpyAV	CCTTC	5 cut(s)	235, 427, 532, 697, 1039
HpyCH4III	ACNGT	1 cut(s)	870
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 343, 1080
HpyF3I	CTNAG	6 cut(s)	155, 404, 416, 458, 830, 873
Hsp92II	CATG	2 cut(s)	236, 323
KspAI	GTTAAC	1 cut(s)	696
KspI	CCGCGG	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	121, 180, 618
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	6 cut(s)	61, 69, 130, 334, 454, 910
Lsp1109I	GCAGC	2 cut(s)	109, 120
LweI	GCATC	3 cut(s)	520, 733, 956
MaeI	CTAG	2 cut(s)	438, 884
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	3 cut(s)	123, 182, 620
MboI	GATC	3 cut(s)	121, 180, 618
MboII	GAAGA	8 cut(s)	302, 386, 440, 499, 587, 866, 1010, 1077
MfeI	CAATTG	1 cut(s)	137
MflI	RGATCY	1 cut(s)	618
MhlI	GDGCHC	2 cut(s)	66, 358
MluCI	AATT	5 cut(s)	137, 245, 444, 497, 586
MlyI	GAGTC	2 cut(s)	89, 332
MmeI	TCCRAC	3 cut(s)	147, 309, 351
MseI	TTAA	2 cut(s)	695, 725
MspA1I	CMGCKG	2 cut(s)	17, 100
MspI	CCGG	4 cut(s)	49, 73, 88, 817
MspR9I	CCNGG	6 cut(s)	49, 68, 73, 88, 352, 981
MunI	CAATTG	1 cut(s)	137
Mva1269I	GAATGC	4 cut(s)	114, 226, 346, 937
MvaI	CCWGG	3 cut(s)	68, 352, 981
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	139, 343, 1080
NciI	CCSGG	3 cut(s)	49, 73, 88
NdeII	GATC	3 cut(s)	121, 180, 618
NlaIII	CATG	2 cut(s)	236, 323
NlaIV	GGNNCC	1 cut(s)	92
PciSI	GCTCTTC	1 cut(s)	369
PctI	GAATGC	4 cut(s)	114, 226, 346, 937
PfeI	GAWTC	3 cut(s)	605, 637, 931
PkrI	GCNGC	3 cut(s)	16, 99, 135
Ple19I	CGATCG	1 cut(s)	183
PleI	GAGTC	2 cut(s)	88, 331
PpsI	GAGTC	2 cut(s)	88, 331
Psp124BI	GAGCTC	1 cut(s)	66
Psp6I	CCWGG	3 cut(s)	66, 350, 979
PspGI	CCWGG	3 cut(s)	66, 350, 979
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	3 cut(s)	70, 102, 977
PstI	CTGCAG	1 cut(s)	363
PsuI	RGATCY	1 cut(s)	618
PvuI	CGATCG	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	66
SacII	CCGCGG	1 cut(s)	18
SalI	GTCGAC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	695, 725
SatI	GCNGC	3 cut(s)	15, 98, 134
Sau3AI	GATC	3 cut(s)	121, 180, 618
Sau96I	GGNCC	3 cut(s)	70, 102, 977
SchI	GAGTC	2 cut(s)	89, 332
ScrFI	CCNGG	6 cut(s)	49, 68, 73, 88, 352, 981
SduI	GDGCHC	2 cut(s)	66, 358
SfaNI	GCATC	3 cut(s)	520, 733, 956
SfcI	CTRYAG	3 cut(s)	359, 807, 866
Sfr303I	CCGCGG	1 cut(s)	18
SgrBI	CCGCGG	1 cut(s)	18
SinI	GGWCC	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SpeI	ACTAGT	1 cut(s)	883
Sse9I	AATT	5 cut(s)	137, 245, 444, 497, 586
SsiI	CCGC	5 cut(s)	15, 17, 100, 224, 396
SspMI	CTAG	2 cut(s)	438, 884
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	6 cut(s)	47, 66, 71, 86, 350, 979
TaaI	ACNGT	1 cut(s)	870
TaqI	TCGA	2 cut(s)	83, 954
TasI	AATT	5 cut(s)	137, 245, 444, 497, 586
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	3 cut(s)	605, 637, 931
Tru1I	TTAA	2 cut(s)	695, 725
Tru9I	TTAA	2 cut(s)	695, 725
TscAI	CASTG	1 cut(s)	363
TseI	GCWGC	2 cut(s)	97, 133
TspDTI	ATGAA	2 cut(s)	510, 599
TspGWI	ACGGA	2 cut(s)	74, 1095
TspRI	CASTG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	1 cut(s)	586
XmiI	GTMKAC	2 cut(s)	83, 888
XspI	CTAG	2 cut(s)	438, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.