RLG00000025550

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017322
Physical Location & Seq
Reverse (-)
46613105 .. 46615031
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025550

Sequence Viewer

Length: 1110 bp
ATGGACAAGATAGCCGCGGAGTTACAGGACAGCGTGGTGGACTTGACCCGGCAGTTGACGGAGCTCCAGGCCCGGTATGAGTCGACCCGGAACCAGCAGCGGACCAGAATGCAAGGTCTGGATCAGAGGGAGCTGCAATTGCGGGCCAGAGAGCTGAGGGTGAAGTCGGAGGAGGAAGCGATCCGGGAACGGTGGAAGTGTCTGGAGATGAGAGAGAGGAATGCGGAAACACATGAGTTGAAGGAATTGGAAAGATTAGAGCATTTGGGTCAGCTTGAGAAATCGGTGGAAGAGAGGGAGAGGTCTTTGGATGAGCTACATGAGTCGTTGGAGGAGCAGAGGAAGCATTCCAGGGCACTACAGGAGGTGTTGGAAGAGCATTTGGGGTCGGTGGGCGGGGGGCTGAGGGTGAAGCTGAGGCAGTTTGAAGAGAAGGCTAGAGAAATTGGATTGGAGCTGAGTGGTGGTGATGGAGGATTGGAGTTGAAGAGAGGTGAATTGGTGGGTTGCGAAATGGGAGGTGGTTTGGATGCGGAGAAGGTTGTGAAGCTTATTGGGGTGATTTGTCAGCGTGAAGAGATTATGAAGTTATGTCAGGGACTTGATTCTGGAGATAAGATCCACGATGTTATTCGAATTCTCATTGAAAGAAAGCAACTGATAGAGGCTGTTAGATTTATATGCACCTTCAAGTTAACTGACAAGTTCCCCCCTGTACCACTCTTAAACGAGTCTGTGGAGGATGCAGAGAAGTGGTGGAGTGAAACTTTCAGTCAAAAGAAATCACTTGATAAAAAGGGAAAAGATGTAGATGACCGAATAACTAATCTAAGAGCTGTGGTTCAATGTGTTGAAGAATACAACCTACAGTCTGAGTATTCACTAGCAGACATTATCAATGATATTTTGGAGCTTGAAAAACTAAAGGAGAATCTGCATTCGGTGGCATCTCTTGACATTATGATGAAAACTAAAGGGCTCGGAAAACTAAAGGAGAGAAGGGAGGTGGTGCTATGTCTTCCATCCTTTGATGATAAACAAGGGAAGGAATTCTGGAGGAAACGAAGATTTCGCACATATCGCCGTTGCAGAAAAAAATGTAATCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

370

Amino Acids

43.09

Weight (kDa)

6.29

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 176 - 313 4.4e-32 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 83
AccII CGCG 1 cut(s) 17
AciI CCGC 7 cut(s) 15, 17, 100, 142, 224, 396, 533
AclWI GGATC 3 cut(s) 129, 175, 613
AcsI RAATTY 2 cut(s) 636, 1049
AfaI GTAC 1 cut(s) 717
AgsI TTSAA 8 cut(s) 241, 428, 487, 647, 691, 845, 854, 917
AjnI CCWGG 2 cut(s) 66, 350
Alw21I GWGCWC 1 cut(s) 66
AlwI GGATC 3 cut(s) 129, 175, 613
AoxI GGCC 2 cut(s) 69, 144
ApeKI GCWGC 2 cut(s) 97, 133
ApoI RAATTY 2 cut(s) 636, 1049
Asp700I GAANNNNTTC 1 cut(s) 1049
AspS9I GGNCC 3 cut(s) 70, 102, 144
AsuC2I CCSGG 4 cut(s) 49, 73, 88, 185
AsuHPI GGTGA 5 cut(s) 172, 421, 479, 506, 571
AsuII TTCGAA 1 cut(s) 634
AvaII GGWCC 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 358
BanII GRGCYC 2 cut(s) 66, 981
BbsI GAAGAC 1 cut(s) 1010
Bbv12I GWGCWC 1 cut(s) 66
BbvCI CCTCAGC 3 cut(s) 155, 404, 416
BbvI GCAGC 2 cut(s) 109, 120
BccI CCATC 2 cut(s) 464, 1030
BceAI ACGGC 1 cut(s) 1068
BciT130I CCWGG 2 cut(s) 68, 352
BcnI CCSGG 4 cut(s) 49, 73, 88, 185
BfaI CTAG 2 cut(s) 438, 884
BfmI CTRYAG 2 cut(s) 359, 866
BisI GCNGC 3 cut(s) 15, 98, 134
BlsI GCNGC 3 cut(s) 16, 99, 135
Bme1390I CCNGG 6 cut(s) 49, 68, 73, 88, 185, 352
Bme18I GGWCC 1 cut(s) 102
BmgT120I GGNCC 3 cut(s) 70, 102, 144
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 6 cut(s) 49, 68, 73, 88, 185, 352
BmsI GCATC 3 cut(s) 520, 733, 956
BpiI GAAGAC 1 cut(s) 1010
BpmI CTGGAG 4 cut(s) 50, 224, 630, 1075
Bpu10I CCTNAGC 3 cut(s) 155, 404, 416
Bpu14I TTCGAA 1 cut(s) 634
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 4 cut(s) 49, 73, 88, 185
BsaJI CCNNGG 2 cut(s) 15, 351
BseBI CCWGG 2 cut(s) 68, 352
BseDI CCNNGG 2 cut(s) 15, 351
BseGI GGATG 4 cut(s) 316, 535, 748, 1022
BseMII CTCAG 5 cut(s) 146, 395, 407, 449, 864
BseRI GAGGAG 2 cut(s) 185, 347
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 2 cut(s) 109, 120
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 71, 146
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 4 cut(s) 49, 73, 88, 184
BslFI GGGAC 1 cut(s) 612
BsmFI GGGAC 1 cut(s) 612
BsmI GAATGC 4 cut(s) 114, 226, 346, 937
BsnI GGCC 2 cut(s) 71, 146
Bsp119I TTCGAA 1 cut(s) 634
Bsp1286I GDGCHC 3 cut(s) 66, 358, 981
Bsp143I GATC 3 cut(s) 121, 180, 618
BspACI CCGC 7 cut(s) 15, 17, 100, 142, 224, 396, 533
BspANI GGCC 2 cut(s) 71, 146
BspCNI CTCAG 5 cut(s) 147, 396, 408, 450, 865
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 3 cut(s) 129, 175, 613
BspQI GCTCTTC 1 cut(s) 369
BspT104I TTCGAA 1 cut(s) 634
BssECI CCNNGG 2 cut(s) 15, 351
BssMI GATC 3 cut(s) 121, 180, 618
Bst2UI CCWGG 2 cut(s) 68, 352
Bst4CI ACNGT 2 cut(s) 192, 870
Bst6I CTCTTC 5 cut(s) 285, 369, 423, 482, 570
BstBI TTCGAA 1 cut(s) 634
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 6 cut(s) 155, 404, 416, 458, 830, 873
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 4 cut(s) 316, 535, 748, 1022
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 3 cut(s) 124, 183, 621
BstMBI GATC 3 cut(s) 121, 180, 618
BstMWI GCNNNNNNNGC 3 cut(s) 139, 343, 1080
BstNI CCWGG 2 cut(s) 68, 352
BstSCI CCNGG 6 cut(s) 47, 66, 71, 86, 183, 350
BstSFI CTRYAG 2 cut(s) 359, 866
BstSLI GKGCMC 1 cut(s) 358
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 109, 120
BstV2I GAAGAC 1 cut(s) 1010
BstX2I RGATCY 1 cut(s) 618
BstYI RGATCY 1 cut(s) 618
BsuRI GGCC 2 cut(s) 71, 146
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 4 cut(s) 316, 535, 748, 1022
Cac8I GCNNGC 1 cut(s) 144
Cfr13I GGNCC 3 cut(s) 70, 102, 144
Cfr42I CCGCGG 1 cut(s) 18
Csp6I GTAC 1 cut(s) 716
CviAII CATG 2 cut(s) 233, 320
CviQI GTAC 1 cut(s) 716
DdeI CTNAG 6 cut(s) 155, 404, 416, 458, 830, 873
DpnI GATC 3 cut(s) 123, 182, 620
DpnII GATC 3 cut(s) 121, 180, 618
Eam1104I CTCTTC 5 cut(s) 285, 369, 423, 482, 570
EarI CTCTTC 5 cut(s) 285, 369, 423, 482, 570
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 2 cut(s) 66, 981
Eco47I GGWCC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoRI GAATTC 2 cut(s) 636, 1049
EcoRII CCWGG 2 cut(s) 66, 350
EcoT38I GRGCYC 2 cut(s) 66, 981
FaeI CATG 2 cut(s) 236, 323
FaqI GGGAC 1 cut(s) 612
FatI CATG 2 cut(s) 232, 319
FauI CCCGC 2 cut(s) 135, 389
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 15, 98, 134
FokI GGATG 4 cut(s) 323, 542, 755, 1009
FriOI GRGCYC 2 cut(s) 66, 981
Fsp4HI GCNGC 3 cut(s) 15, 98, 134
FspBI CTAG 2 cut(s) 438, 884
GluI GCNGC 3 cut(s) 15, 98, 134
GsuI CTGGAG 4 cut(s) 50, 224, 630, 1075
HaeIII GGCC 2 cut(s) 71, 146
HapII CCGG 4 cut(s) 49, 73, 88, 184
Hin1II CATG 2 cut(s) 236, 323
HincII GTYRAC 3 cut(s) 57, 84, 696
HindII GTYRAC 3 cut(s) 57, 84, 696
HindIII AAGCTT 1 cut(s) 548
HinfI GANTC 5 cut(s) 80, 323, 605, 731, 931
HpaI GTTAAC 1 cut(s) 696
HpaII CCGG 4 cut(s) 49, 73, 88, 184
HphI GGTGA 5 cut(s) 172, 421, 479, 506, 571
Hpy166II GTNNAC 4 cut(s) 40, 57, 84, 696
Hpy188I TCNGA 4 cut(s) 126, 169, 874, 983
Hpy188III TCNNGA 5 cut(s) 119, 203, 609, 953, 1054
Hpy8I GTNNAC 4 cut(s) 40, 57, 84, 696
HpyAV CCTTC 6 cut(s) 235, 427, 532, 697, 993, 1039
HpyCH4III ACNGT 2 cut(s) 192, 870
HpyCH4V TGCA 6 cut(s) 112, 136, 684, 746, 937, 1089
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 343, 1080
HpyF3I CTNAG 6 cut(s) 155, 404, 416, 458, 830, 873
Hsp92II CATG 2 cut(s) 236, 323
KspAI GTTAAC 1 cut(s) 696
KspI CCGCGG 1 cut(s) 18
Kzo9I GATC 3 cut(s) 121, 180, 618
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 6 cut(s) 61, 69, 130, 334, 454, 910
Lsp1109I GCAGC 2 cut(s) 109, 120
LweI GCATC 3 cut(s) 520, 733, 956
MaeI CTAG 2 cut(s) 438, 884
MaeIII GTNAC 1 cut(s) 21
MalI GATC 3 cut(s) 123, 182, 620
MboI GATC 3 cut(s) 121, 180, 618
MboII GAAGA 8 cut(s) 302, 386, 440, 499, 587, 866, 1010, 1077
MfeI CAATTG 1 cut(s) 137
MflI RGATCY 1 cut(s) 618
MhlI GDGCHC 3 cut(s) 66, 358, 981
MluCI AATT 6 cut(s) 137, 245, 444, 497, 636, 1049
MlyI GAGTC 3 cut(s) 89, 332, 740
MmeI TCCRAC 3 cut(s) 147, 309, 351
MroXI GAANNNNTTC 1 cut(s) 1049
MseI TTAA 2 cut(s) 695, 725
MslI CAYNNNNRTG 1 cut(s) 962
MspA1I CMGCKG 2 cut(s) 17, 100
MspI CCGG 4 cut(s) 49, 73, 88, 184
MspR9I CCNGG 6 cut(s) 49, 68, 73, 88, 185, 352
MunI CAATTG 1 cut(s) 137
Mva1269I GAATGC 4 cut(s) 114, 226, 346, 937
MvaI CCWGG 2 cut(s) 68, 352
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 139, 343, 1080
NciI CCSGG 4 cut(s) 49, 73, 88, 185
NdeII GATC 3 cut(s) 121, 180, 618
NlaIII CATG 2 cut(s) 236, 323
NlaIV GGNNCC 1 cut(s) 92
NspV TTCGAA 1 cut(s) 634
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 4 cut(s) 114, 226, 346, 937
PdmI GAANNNNTTC 1 cut(s) 1049
PfeI GAWTC 2 cut(s) 605, 931
PfoI TCCNGGA 1 cut(s) 183
PkrI GCNGC 3 cut(s) 16, 99, 135
PleI GAGTC 3 cut(s) 88, 331, 739
PpsI GAGTC 3 cut(s) 88, 331, 739
Psp124BI GAGCTC 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 66, 350
PspGI CCWGG 2 cut(s) 66, 350
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 3 cut(s) 70, 102, 144
PsuI RGATCY 1 cut(s) 618
RsaI GTAC 1 cut(s) 717
RsaNI GTAC 1 cut(s) 716
RseI CAYNNNNRTG 1 cut(s) 962
SacI GAGCTC 1 cut(s) 66
SacII CCGCGG 1 cut(s) 18
SalI GTCGAC 1 cut(s) 82
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 2 cut(s) 695, 725
SatI GCNGC 3 cut(s) 15, 98, 134
Sau3AI GATC 3 cut(s) 121, 180, 618
Sau96I GGNCC 3 cut(s) 70, 102, 144
SchI GAGTC 3 cut(s) 89, 332, 740
ScrFI CCNGG 6 cut(s) 49, 68, 73, 88, 185, 352
SduI GDGCHC 3 cut(s) 66, 358, 981
SfaNI GCATC 3 cut(s) 520, 733, 956
SfcI CTRYAG 2 cut(s) 359, 866
Sfr303I CCGCGG 1 cut(s) 18
SfuI TTCGAA 1 cut(s) 634
SgrBI CCGCGG 1 cut(s) 18
SinI GGWCC 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 962
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 6 cut(s) 137, 245, 444, 497, 636, 1049
SsiI CCGC 7 cut(s) 15, 17, 100, 142, 224, 396, 533
SspMI CTAG 2 cut(s) 438, 884
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 6 cut(s) 47, 66, 71, 86, 183, 350
TaaI ACNGT 2 cut(s) 192, 870
TaqI TCGA 2 cut(s) 83, 634
TaqII GACCGA 1 cut(s) 831
TasI AATT 6 cut(s) 137, 245, 444, 497, 636, 1049
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 2 cut(s) 605, 931
Tru1I TTAA 2 cut(s) 695, 725
Tru9I TTAA 2 cut(s) 695, 725
TseI GCWGC 2 cut(s) 97, 133
TspDTI ATGAA 2 cut(s) 599, 980
TspGWI ACGGA 2 cut(s) 74, 1095
VpaK11BI GGWCC 1 cut(s) 102
XapI RAATTY 2 cut(s) 636, 1049
XmiI GTMKAC 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 1049
XspI CTAG 2 cut(s) 438, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.