RchiOBHm_Chr3g0460891

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
8974357 .. 8975802
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1446 bp
ATGGACGATATGGACCATCAGAACGATGACAGTTTCAGAGCCGGAGAGCGTATAGATGAAGAAGCATATTATGATTGCCTTGAAGTCGATGACAAATCCGATAAGTTGGGTGAGATTTGGTTCCCACAGAAAAAGAATTATACTATTCTGAAGCAAGAAGAAGTTGCCAAACTTCAGGAGGATGATATTGCAAAAGCGTCCACTTTTCTTTCGGTATCAAAATCTGATGCATGCTTACTGCTCCTTCACTCGAATTGGAGGACCGATAATCTCACCGATGCATGGTTTGCTGATGAAAATAAAATCCGCGAAAAAGCTGGCTTGTTGAAGAAACCCCTACTGGATAATGCCGGTGAAGATCTAATAAGCAGTAGTTGCCGACTATGTTCATATAGTAATAGTAGTAATATCTCAGCTTCTTGCGGTCATCCTTTTTGTGGAGATTGCTGGACAGGTTACATAACAAAATTAATCAATGAGGAGGGTCCTGCATGTTTGGTTTTGAGATGTCCTGAACCCGATTGTAGTGCAGTGGTTGGACCTGATTTAGTCCAAAACGTAATGTTGGCCACAAACCAAGAAGATGAATGTTATAAGAGGTACAAGCATTACCTATTGAGATCTTATTTAGAAGATCGCAAGTTGATCAAGTGGTGTCCTGCTCCGGATTGTAACTCCGCTATTAGGTTGGATGCTGGTGGTTCTAGTACTAGTTGCTATCATGTCTCGTGTGTTTGCTCTCGTAGTTATTGCTGGAACTGTGAGGAGGAGGAGAATCATCGTCCCGTGGACTGCCAAACTGCAGGGAAGTGGATTTCGAATATATTAGAATCCGTGCATTACCAGCGCTGGCAAAACCACGGAAAATCAAAGGAAAAAGCTCTTGAAGTATTTGACGAGGTGAAGACGACCGTGCATCAAGAATTATTAGAAGGGCACGAGTTGGATTTTTTGTTAGAGGCATGCAAACAGATGATTGAATGCAGGCAGGTATTGCGATGGATTGTTGTGTACGATTACTACAACATGAGTGATCATGAGGCGCAGCATCCTAAACGGAAGCTATTCGAGTGCTTGCAAGGCCATGCGGAGTTCAGCGTAAAGAAGCTTGAGAACCAAGTGCAACAGTTTCTCATCTTGGCTAATAGTGATCCCTCCTCATCCTCATCAGTAGTGGAAAAGAAGGGCTTTGCAGACTTTCGTGTAAGACTCCAAGACCTTACAAATATGACAGCGACCTATTTTAAGAACCTGGTTAGGGCATTAGAGCATGGGCTTCCAGAGACATGCTGCGAAGGAGCTAGTTGGTCTTGTGAGCGCTGTACTTATATCAATGCAATGTCTTCCGTTAAATGTGGGATGTGTACTGCACACATTCCAGAGGGCGCCGGTTACTGGTCTTGTGACAAGTGCACCTATTTCAATCCTGCGTCCAGCACCGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

481

Amino Acids

54.74

Weight (kDa)

5.16

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 199 - 265 2.6e-13 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018171)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 594
Acc36I ACCTGC 1 cut(s) 979
AccB1I GGYRCC 1 cut(s) 1385
AccII CGCG 1 cut(s) 309
AccIII TCCGGA 1 cut(s) 664
AciI CCGC 4 cut(s) 307, 423, 678, 1088
AclWI GGATC 1 cut(s) 1145
AcoI YGGCCR 1 cut(s) 567
AcuI CTGAAG 2 cut(s) 158, 170
AcyI GRCGYC 1 cut(s) 1386
AfaI GTAC 5 cut(s) 602, 709, 1013, 1324, 1366
AfeI AGCGCT 2 cut(s) 848, 1319
AfiI CCNNNNNNNGG 5 cut(s) 282, 437, 684, 1258, 1395
AgsI TTSAA 5 cut(s) 83, 328, 887, 980, 1423
AhlI ACTAGT 1 cut(s) 710
AjnI CCWGG 1 cut(s) 1251
AluBI AGCT 6 cut(s) 317, 416, 881, 1063, 1108, 1301
AluI AGCT 6 cut(s) 317, 416, 881, 1063, 1108, 1301
Alw21I GWGCWC 1 cut(s) 1415
Alw26I GTCTC 2 cut(s) 730, 1277
Alw44I GTGCAC 1 cut(s) 1411
AlwI GGATC 1 cut(s) 1145
Aor13HI TCCGGA 1 cut(s) 664
Aor51HI AGCGCT 2 cut(s) 848, 1319
AoxI GGCC 2 cut(s) 567, 1081
ApaLI GTGCAC 1 cut(s) 1411
ApeKI GCWGC 2 cut(s) 1045, 1290
AseI ATTAAT 1 cut(s) 470
Asp700I GAANNNNTTC 1 cut(s) 1064
AspLEI GCGC 4 cut(s) 849, 1045, 1320, 1388
AspS9I GGNCC 4 cut(s) 13, 261, 485, 539
AsuHPI GGTGA 4 cut(s) 122, 265, 365, 913
AsuII TTCGAA 1 cut(s) 818
AvaII GGWCC 4 cut(s) 13, 261, 485, 539
BaeGI GKGCMC 2 cut(s) 939, 1415
BalI TGGCCA 1 cut(s) 569
BanI GGYRCC 1 cut(s) 1385
BauI CACGAG 2 cut(s) 727, 938
BbsI GAAGAC 2 cut(s) 911, 1335
Bbv12I GWGCWC 1 cut(s) 1415
BbvI GCAGC 2 cut(s) 1057, 1277
BccI CCATC 2 cut(s) 24, 993
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BciT130I CCWGG 1 cut(s) 1253
BclI TGATCA 2 cut(s) 645, 1033
BcoDI GTCTC 2 cut(s) 730, 1277
BcuI ACTAGT 1 cut(s) 710
BfaI CTAG 3 cut(s) 705, 711, 1302
BfmI CTRYAG 1 cut(s) 801
BfoI RGCGCY 3 cut(s) 850, 1321, 1389
BfuAI ACCTGC 1 cut(s) 979
BglII AGATCT 2 cut(s) 358, 620
BisI GCNGC 2 cut(s) 1046, 1291
BlsI GCNGC 2 cut(s) 1047, 1292
BmcAI AGTACT 1 cut(s) 709
Bme1390I CCNGG 1 cut(s) 1253
Bme18I GGWCC 4 cut(s) 13, 261, 485, 539
BmgT120I GGNCC 4 cut(s) 13, 261, 485, 539
BmiI GGNNCC 3 cut(s) 122, 486, 1387
BmrFI CCNGG 1 cut(s) 1253
BmsI GCATC 5 cut(s) 217, 268, 682, 925, 1057
BpiI GAAGAC 2 cut(s) 911, 1335
Bpu14I TTCGAA 1 cut(s) 818
BpuEI CTTGAG 1 cut(s) 1130
BsaHI GRCGYC 1 cut(s) 1386
BsaJI CCNNGG 2 cut(s) 786, 859
BsaWI WCCGGW 1 cut(s) 664
Bsc4I CCNNNNNNNGG 5 cut(s) 282, 437, 684, 1258, 1395
Bse118I RCCGGY 3 cut(s) 350, 1388, 1439
Bse1I ACTGG 2 cut(s) 345, 1400
Bse3DI GCAATG 1 cut(s) 1344
BseAI TCCGGA 1 cut(s) 664
BseBI CCWGG 1 cut(s) 1253
BseDI CCNNGG 2 cut(s) 786, 859
BseGI GGATG 6 cut(s) 187, 427, 697, 1048, 1160, 1365
BseLI CCNNNNNNNGG 5 cut(s) 282, 437, 684, 1258, 1395
BseMI GCAATG 1 cut(s) 1344
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 2 cut(s) 345, 1400
BseRI GAGGAG 5 cut(s) 494, 779, 782, 785, 1147
BseSI GKGCMC 2 cut(s) 939, 1415
BseXI GCAGC 2 cut(s) 1057, 1277
BsgI GTGCAG 2 cut(s) 549, 1353
Bsh1236I CGCG 1 cut(s) 309
Bsh1285I CGRYCG 1 cut(s) 912
BshFI GGCC 2 cut(s) 569, 1083
BshNI GGYRCC 1 cut(s) 1385
BsiEI CGRYCG 1 cut(s) 912
BsiHKAI GWGCWC 1 cut(s) 1415
BsiSI CCGG 5 cut(s) 42, 351, 665, 1389, 1440
BslFI GGGAC 1 cut(s) 768
BslI CCNNNNNNNGG 5 cut(s) 282, 437, 684, 1258, 1395
BsmAI GTCTC 2 cut(s) 730, 1277
BsmFI GGGAC 1 cut(s) 768
BsmI GAATGC 1 cut(s) 986
BsnI GGCC 2 cut(s) 569, 1083
Bsp119I TTCGAA 1 cut(s) 818
Bsp1286I GDGCHC 2 cut(s) 939, 1415
Bsp13I TCCGGA 1 cut(s) 664
Bsp143I GATC 6 cut(s) 358, 620, 634, 645, 1033, 1150
BspACI CCGC 4 cut(s) 307, 423, 678, 1088
BspANI GGCC 2 cut(s) 569, 1083
BspCNI CTCAG 1 cut(s) 425
BspEI TCCGGA 1 cut(s) 664
BspFNI CGCG 1 cut(s) 309
BspHI TCATGA 1 cut(s) 1036
BspLI GGNNCC 3 cut(s) 122, 486, 1387
BspMAI CTGCAG 1 cut(s) 805
BspMI ACCTGC 1 cut(s) 979
BspPI GGATC 1 cut(s) 1145
BspT104I TTCGAA 1 cut(s) 818
BspT107I GGYRCC 1 cut(s) 1385
BsrDI GCAATG 1 cut(s) 1344
BsrFI RCCGGY 3 cut(s) 350, 1388, 1439
BsrI ACTGG 2 cut(s) 345, 1400
BssAI RCCGGY 3 cut(s) 350, 1388, 1439
BssECI CCNNGG 2 cut(s) 786, 859
BssMI GATC 6 cut(s) 358, 620, 634, 645, 1033, 1150
BssNI GRCGYC 1 cut(s) 1386
BssSI CACGAG 2 cut(s) 727, 938
Bst2BI CACGAG 2 cut(s) 727, 938
Bst2UI CCWGG 1 cut(s) 1253
Bst4CI ACNGT 4 cut(s) 32, 761, 913, 1128
BstACI GRCGYC 1 cut(s) 1386
BstAPI GCANNNNNTGC 3 cut(s) 287, 375, 994
BstBI TTCGAA 1 cut(s) 818
BstC8I GCNNGC 6 cut(s) 232, 319, 851, 964, 986, 1076
BstDEI CTNAG 1 cut(s) 412
BstDSI CCRYGG 2 cut(s) 786, 859
BstF5I GGATG 6 cut(s) 187, 427, 697, 1048, 1160, 1365
BstFNI CGCG 1 cut(s) 309
BstH2I RGCGCY 3 cut(s) 850, 1321, 1389
BstHHI GCGC 4 cut(s) 849, 1045, 1320, 1388
BstKTI GATC 6 cut(s) 361, 623, 637, 648, 1036, 1153
BstMAI GTCTC 2 cut(s) 730, 1277
BstMBI GATC 6 cut(s) 358, 620, 634, 645, 1033, 1150
BstMCI CGRYCG 1 cut(s) 912
BstMWI GCNNNNNNNGC 5 cut(s) 287, 375, 844, 994, 1080
BstNI CCWGG 1 cut(s) 1253
BstNSI RCATGY 4 cut(s) 234, 495, 966, 1290
BstSCI CCNGG 1 cut(s) 1251
BstSFI CTRYAG 1 cut(s) 801
BstSLI GKGCMC 2 cut(s) 939, 1415
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 2 cut(s) 1057, 1277
BstV2I GAAGAC 2 cut(s) 911, 1335
BstX2I RGATCY 2 cut(s) 358, 620
BstYI RGATCY 2 cut(s) 358, 620
BsuRI GGCC 2 cut(s) 569, 1083
BtgI CCRYGG 2 cut(s) 786, 859
BtgZI GCGATG 1 cut(s) 1012
BtsCI GGATG 6 cut(s) 187, 427, 697, 1048, 1160, 1365
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 1 cut(s) 537
BveI ACCTGC 1 cut(s) 979
Cac8I GCNNGC 6 cut(s) 232, 319, 851, 964, 986, 1076
CciI TCATGA 1 cut(s) 1036
CfoI GCGC 4 cut(s) 849, 1045, 1320, 1388
Cfr10I RCCGGY 3 cut(s) 350, 1388, 1439
Cfr13I GGNCC 4 cut(s) 13, 261, 485, 539
CseI GACGC 2 cut(s) 186, 1419
CsiI ACCWGGT 1 cut(s) 1251
Csp6I GTAC 5 cut(s) 601, 708, 1012, 1323, 1365
CviQI GTAC 5 cut(s) 601, 708, 1012, 1323, 1365
DdeI CTNAG 1 cut(s) 412
DinI GGCGCC 1 cut(s) 1387
DpnI GATC 6 cut(s) 360, 622, 636, 647, 1035, 1152
DpnII GATC 6 cut(s) 358, 620, 634, 645, 1033, 1150
EaeI YGGCCR 1 cut(s) 567
Eco47I GGWCC 4 cut(s) 13, 261, 485, 539
Eco47III AGCGCT 2 cut(s) 848, 1319
Eco57I CTGAAG 2 cut(s) 158, 170
EcoO109I RGGNCCY 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 1251
EcoT22I ATGCAT 2 cut(s) 232, 283
EgeI GGCGCC 1 cut(s) 1387
EheI GGCGCC 1 cut(s) 1387
FalI AAGNNNNNCTT 2 cut(s) 1172, 1204
FaqI GGGAC 1 cut(s) 768
FbaI TGATCA 2 cut(s) 645, 1033
Fnu4HI GCNGC 2 cut(s) 1046, 1291
FokI GGATG 6 cut(s) 194, 414, 704, 1035, 1147, 1372
Fsp4HI GCNGC 2 cut(s) 1046, 1291
FspBI CTAG 3 cut(s) 705, 711, 1302
GlaI GCGC 4 cut(s) 848, 1044, 1319, 1387
GluI GCNGC 2 cut(s) 1046, 1291
HaeII RGCGCY 3 cut(s) 850, 1321, 1389
HaeIII GGCC 2 cut(s) 569, 1083
HapII CCGG 5 cut(s) 42, 351, 665, 1389, 1440
HgaI GACGC 2 cut(s) 186, 1419
HhaI GCGC 4 cut(s) 849, 1045, 1320, 1388
Hin1I GRCGYC 1 cut(s) 1386
Hin6I GCGC 4 cut(s) 847, 1043, 1318, 1386
HinP1I GCGC 4 cut(s) 847, 1043, 1318, 1386
HindIII AAGCTT 1 cut(s) 1106
HinfI GANTC 3 cut(s) 775, 830, 1209
HpaII CCGG 5 cut(s) 42, 351, 665, 1389, 1440
HphI GGTGA 4 cut(s) 122, 265, 365, 913
Hpy166II GTNNAC 5 cut(s) 201, 790, 1012, 1365, 1413
Hpy188I TCNGA 5 cut(s) 21, 38, 100, 150, 226
Hpy188III TCNNGA 8 cut(s) 176, 512, 665, 884, 920, 1037, 1280, 1379
Hpy8I GTNNAC 5 cut(s) 201, 790, 1012, 1365, 1413
HpyAV CCTTC 4 cut(s) 254, 926, 1177, 1289
HpyCH4III ACNGT 4 cut(s) 32, 761, 913, 1128
HpyCH4IV ACGT 1 cut(s) 558
HpyF10VI GCNNNNNNNGC 5 cut(s) 287, 375, 844, 994, 1080
HpyF3I CTNAG 1 cut(s) 412
HpySE526I ACGT 1 cut(s) 558
Hsp92I GRCGYC 1 cut(s) 1386
HspAI GCGC 4 cut(s) 847, 1043, 1318, 1386
KasI GGCGCC 1 cut(s) 1385
Kpn2I TCCGGA 1 cut(s) 664
Ksp22I TGATCA 2 cut(s) 645, 1033
Kzo9I GATC 6 cut(s) 358, 620, 634, 645, 1033, 1150
LmnI GCTCC 3 cut(s) 246, 667, 1298
Lsp1109I GCAGC 2 cut(s) 1057, 1277
LweI GCATC 5 cut(s) 217, 268, 682, 925, 1057
MabI ACCWGGT 1 cut(s) 1251
MaeI CTAG 3 cut(s) 705, 711, 1302
MaeII ACGT 1 cut(s) 558
MaeIII GTNAC 4 cut(s) 455, 671, 1391, 1403
MalI GATC 6 cut(s) 360, 622, 636, 647, 1035, 1152
MboI GATC 6 cut(s) 358, 620, 634, 645, 1033, 1150
MboII GAAGA 8 cut(s) 71, 170, 340, 368, 593, 644, 916, 1335
MflI RGATCY 2 cut(s) 358, 620
MhlI GDGCHC 2 cut(s) 939, 1415
MlsI TGGCCA 1 cut(s) 569
MluCI AATT 4 cut(s) 136, 253, 467, 923
MluNI TGGCCA 1 cut(s) 569
Mly113I GGCGCC 1 cut(s) 1386
MlyI GAGTC 1 cut(s) 1203
MmeI TCCRAC 3 cut(s) 517, 669, 924
Mox20I TGGCCA 1 cut(s) 569
Mph1103I ATGCAT 2 cut(s) 232, 283
MroI TCCGGA 1 cut(s) 664
MroXI GAANNNNTTC 1 cut(s) 1064
MscI TGGCCA 1 cut(s) 569
MseI TTAA 3 cut(s) 470, 1245, 1350
Msp20I TGGCCA 1 cut(s) 569
MspI CCGG 5 cut(s) 42, 351, 665, 1389, 1440
MspR9I CCNGG 1 cut(s) 1253
Mva1269I GAATGC 1 cut(s) 986
MvaI CCWGG 1 cut(s) 1253
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 5 cut(s) 287, 375, 844, 994, 1080
NarI GGCGCC 1 cut(s) 1386
NdeII GATC 6 cut(s) 358, 620, 634, 645, 1033, 1150
NlaIV GGNNCC 3 cut(s) 122, 486, 1387
NmuCI GTSAC 1 cut(s) 1403
NsiI ATGCAT 2 cut(s) 232, 283
NspI RCATGY 4 cut(s) 234, 495, 966, 1290
NspV TTCGAA 1 cut(s) 818
PaeI GCATGC 2 cut(s) 234, 966
PagI TCATGA 1 cut(s) 1036
PctI GAATGC 1 cut(s) 986
PdmI GAANNNNTTC 1 cut(s) 1064
PfeI GAWTC 2 cut(s) 775, 830
PkrI GCNGC 2 cut(s) 1047, 1292
PleI GAGTC 1 cut(s) 1203
PluTI GGCGCC 1 cut(s) 1389
PpsI GAGTC 1 cut(s) 1203
PpuMI RGGWCCY 1 cut(s) 485
PshBI ATTAAT 1 cut(s) 470
PsiI TTATAA 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 1251
PspGI CCWGG 1 cut(s) 1251
PspN4I GGNNCC 3 cut(s) 122, 486, 1387
PspPI GGNCC 4 cut(s) 13, 261, 485, 539
PspPPI RGGWCCY 1 cut(s) 485
PstI CTGCAG 1 cut(s) 805
PsuI RGATCY 2 cut(s) 358, 620
RsaI GTAC 5 cut(s) 602, 709, 1013, 1324, 1366
RsaNI GTAC 5 cut(s) 601, 708, 1012, 1323, 1365
SaqAI TTAA 3 cut(s) 470, 1245, 1350
SatI GCNGC 2 cut(s) 1046, 1291
Sau3AI GATC 6 cut(s) 358, 620, 634, 645, 1033, 1150
Sau96I GGNCC 4 cut(s) 13, 261, 485, 539
ScaI AGTACT 1 cut(s) 709
SchI GAGTC 1 cut(s) 1203
ScrFI CCNGG 1 cut(s) 1253
SduI GDGCHC 2 cut(s) 939, 1415
SexAI ACCWGGT 1 cut(s) 1251
SfaNI GCATC 5 cut(s) 217, 268, 682, 925, 1057
SfcI CTRYAG 1 cut(s) 801
SfoI GGCGCC 1 cut(s) 1387
SfuI TTCGAA 1 cut(s) 818
SinI GGWCC 4 cut(s) 13, 261, 485, 539
SmlI CTYRAG 1 cut(s) 1109
SmoI CTYRAG 1 cut(s) 1109
SpeI ACTAGT 1 cut(s) 710
SphI GCATGC 2 cut(s) 234, 966
Sse9I AATT 4 cut(s) 136, 253, 467, 923
SsiI CCGC 4 cut(s) 307, 423, 678, 1088
SspDI GGCGCC 1 cut(s) 1385
SspMI CTAG 3 cut(s) 705, 711, 1302
StyD4I CCNGG 1 cut(s) 1251
TaaI ACNGT 4 cut(s) 32, 761, 913, 1128
TaiI ACGT 1 cut(s) 561
TaqI TCGA 4 cut(s) 87, 251, 818, 1068
TaqII GACCGA 1 cut(s) 278
TasI AATT 4 cut(s) 136, 253, 467, 923
TatI WGTACW 3 cut(s) 707, 1322, 1364
TfiI GAWTC 2 cut(s) 775, 830
Tru1I TTAA 3 cut(s) 470, 1245, 1350
Tru9I TTAA 3 cut(s) 470, 1245, 1350
TscAI CASTG 1 cut(s) 537
TseFI GTSAC 1 cut(s) 1403
TseI GCWGC 2 cut(s) 1045, 1290
Tsp45I GTSAC 1 cut(s) 1403
TspDTI ATGAA 4 cut(s) 72, 309, 378, 600
TspGWI ACGGA 4 cut(s) 823, 876, 1072, 1336
TspRI CASTG 1 cut(s) 537
VneI GTGCAC 1 cut(s) 1411
VpaK11BI GGWCC 4 cut(s) 13, 261, 485, 539
VspI ATTAAT 1 cut(s) 470
XceI RCATGY 4 cut(s) 234, 495, 966, 1290
XmnI GAANNNNTTC 1 cut(s) 1064
XspI CTAG 3 cut(s) 705, 711, 1302
ZrmI AGTACT 1 cut(s) 709
Zsp2I ATGCAT 2 cut(s) 232, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.