RchiOBHm_Chr3g0461241

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0020531
Physical Location & Seq
Forward (+)
9317355 .. 9318470
1116 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 705 bp
ATGCCTTCGGCTGGACCAAGCCCTACACCCCTTTCGAACCCTACAACTGTGGTTAGCTCACAGTTCCTGGCATCCTACCCCGTGGATCTGTACATTTCTGAGAAGCTGATCACCATTAAGGAAGGTGCCTTCACTGTCACCAATGTTGATGGCGAAGTCATGTTCACTGTAAAAGGTTCTTTTTTCAGCCTTCATGATACTCGACAATTGCTTGACAGCGCTGGTACTCCTATCCCCACCTTCCGTAAGAAGATTATTTCGATACATAGGAGATGGAAAGTATATAGAGGAGATAGCTCGAGCAGAAAAGATCTACTTTTCAGTGCCAAGAAGTCAGGGCTAGTCCAAATTAAGACTGAACTAGATGTGTTCTTGGCTACTAACACAAAGGAATTAGACCAGCATGATTTCAAGGTCAAAGGAAGCTTTAGGGATAAAGCATGTGTTAATGATATAGGAGTGAATTGTAATTCCAATCCTAATATTGGAGTGGAACACAACAACAATCCTATCAGAATCCAACAATTAACACCTGCCATCAAGTGTGCTTACAACATTATCAAGACACAGTCTGGGCTACAAAGCAGAATTCTGAGTAGAAAGCAGAACACACCAAGCCAAGACAAAAAGGAGCCTCTACACCAAGACAAATGTCCTCTGTGCTGTTGTAAATCACACCACAAACTCAATCGTGATATGTACTAA

Protein Analysis

234

Amino Acids

26.22

Weight (kDa)

9.44

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 28 - 149 1.5e-29 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020531)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0461241
rosa_multiflora Rmu_ssc0000326.1_g000013
rosa_roxburghii Rroxscaffold_6G00418770
rosa_rugosa Rorug03G0049200
rosa_samantha Rh3BG110700 Rh3DG112500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 541
Acc36I ACCTGC 1 cut(s) 541
AccB1I GGYRCC 1 cut(s) 125
AclWI GGATC 1 cut(s) 93
AcsI RAATTY 1 cut(s) 588
AfaI GTAC 3 cut(s) 92, 226, 701
AfeI AGCGCT 1 cut(s) 220
AfiI CCNNNNNNNGG 2 cut(s) 11, 485
AgsI TTSAA 1 cut(s) 412
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 4 cut(s) 57, 106, 297, 426
AluI AGCT 4 cut(s) 57, 106, 297, 426
AlwI GGATC 1 cut(s) 93
AlwNI CAGNNNCTG 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 298
Aor51HI AGCGCT 1 cut(s) 220
ApoI RAATTY 1 cut(s) 588
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 103, 130
AsuII TTCGAA 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 298
AvaII GGWCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 125
BccI CCATC 3 cut(s) 143, 267, 545
BciT130I CCWGG 1 cut(s) 68
BclI TGATCA 1 cut(s) 108
BfaI CTAG 2 cut(s) 341, 362
BfoI RGCGCY 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 541
BglII AGATCT 1 cut(s) 310
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 127, 633
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 80
BoxI GACNNNNGTC 1 cut(s) 651
Bpu14I TTCGAA 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 485
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 71
BseLI CCNNNNNNNGG 2 cut(s) 11, 485
BseMII CTCAG 2 cut(s) 90, 584
BseRI GAGGAG 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 298
BslI CCNNNNNNNGG 2 cut(s) 11, 485
BsoBI CYCGRG 1 cut(s) 298
Bsp119I TTCGAA 1 cut(s) 35
Bsp1407I TGTACA 1 cut(s) 90
Bsp143I GATC 3 cut(s) 85, 108, 310
BspCNI CTCAG 2 cut(s) 91, 585
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 127, 633
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 1 cut(s) 93
BspT104I TTCGAA 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 125
BsrGI TGTACA 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 3 cut(s) 85, 108, 310
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 5 cut(s) 49, 63, 136, 169, 570
BstAUI TGTACA 1 cut(s) 90
BstBI TTCGAA 1 cut(s) 35
BstDEI CTNAG 2 cut(s) 99, 593
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 3 cut(s) 88, 111, 313
BstMBI GATC 3 cut(s) 85, 108, 310
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 444
BstPAI GACNNNNGTC 1 cut(s) 651
BstSCI CCNGG 1 cut(s) 66
BstX2I RGATCY 2 cut(s) 85, 310
BstYI RGATCY 2 cut(s) 85, 310
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 71
BtsIMutI CAGTG 3 cut(s) 132, 165, 328
BveI ACCTGC 1 cut(s) 541
CaiI CAGNNNCTG 1 cut(s) 67
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 3 cut(s) 91, 225, 700
CviAII CATG 4 cut(s) 160, 194, 404, 441
CviQI GTAC 3 cut(s) 91, 225, 700
DdeI CTNAG 2 cut(s) 99, 593
DpnI GATC 3 cut(s) 87, 110, 312
DpnII GATC 3 cut(s) 85, 108, 310
Eco47I GGWCC 1 cut(s) 14
Eco47III AGCGCT 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 298
EcoRI GAATTC 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 66
FaeI CATG 4 cut(s) 163, 197, 407, 444
FaiI YATR 9 cut(s) 161, 195, 267, 283, 285, 405, 442, 455, 698
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FatI CATG 4 cut(s) 159, 193, 403, 440
FbaI TGATCA 1 cut(s) 108
FokI GGATG 1 cut(s) 58
FspBI CTAG 2 cut(s) 341, 362
GlaI GCGC 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 222
HhaI GCGC 1 cut(s) 221
Hin1II CATG 4 cut(s) 163, 197, 407, 444
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 424
HinfI GANTC 1 cut(s) 516
HphI GGTGA 2 cut(s) 103, 130
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 3 cut(s) 100, 515, 594
Hpy188III TCNNGA 3 cut(s) 194, 562, 692
Hpy8I GTNNAC 1 cut(s) 165
HpyAV CCTTC 5 cut(s) 15, 116, 139, 200, 250
HpyCH4III ACNGT 5 cut(s) 49, 63, 136, 169, 570
HpyF3I CTNAG 2 cut(s) 99, 593
Hsp92II CATG 4 cut(s) 163, 197, 407, 444
HspAI GCGC 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 3 cut(s) 85, 108, 310
LmnI GCTCC 1 cut(s) 631
LpnPI CCDG 7 cut(s) 53, 80, 207, 321, 413, 546, 558
LweI GCATC 1 cut(s) 80
MaeI CTAG 2 cut(s) 341, 362
MaeIII GTNAC 1 cut(s) 136
MalI GATC 3 cut(s) 87, 110, 312
MboI GATC 3 cut(s) 85, 108, 310
MboII GAAGA 1 cut(s) 262
MfeI CAATTG 1 cut(s) 206
MflI RGATCY 2 cut(s) 85, 310
MluCI AATT 7 cut(s) 206, 348, 392, 463, 469, 524, 588
MmeI TCCRAC 1 cut(s) 544
MnlI CCTC 3 cut(s) 281, 645, 666
MseI TTAA 4 cut(s) 117, 351, 447, 527
MspR9I CCNGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 68
NdeII GATC 3 cut(s) 85, 108, 310
NlaIII CATG 4 cut(s) 163, 197, 407, 444
NlaIV GGNNCC 2 cut(s) 127, 633
NmuCI GTSAC 1 cut(s) 136
NspI RCATGY 1 cut(s) 444
NspV TTCGAA 1 cut(s) 35
PaeR7I CTCGAG 1 cut(s) 298
PagI TCATGA 1 cut(s) 193
PaqCI CACCTGC 1 cut(s) 541
PfeI GAWTC 1 cut(s) 516
PflFI GACNNNGTC 1 cut(s) 568
PshAI GACNNNNGTC 1 cut(s) 651
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 127, 633
PspPI GGNCC 1 cut(s) 14
PspXI VCTCGAGB 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 67
PsuI RGATCY 2 cut(s) 85, 310
PsyI GACNNNGTC 1 cut(s) 568
RsaI GTAC 3 cut(s) 92, 226, 701
RsaNI GTAC 3 cut(s) 91, 225, 700
SaqAI TTAA 4 cut(s) 117, 351, 447, 527
Sau3AI GATC 3 cut(s) 85, 108, 310
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 68
SetI ASST 9 cut(s) 59, 108, 127, 178, 242, 299, 417, 428, 535
SfaNI GCATC 1 cut(s) 80
Sfr274I CTCGAG 1 cut(s) 298
SfuI TTCGAA 1 cut(s) 35
SinI GGWCC 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 7 cut(s) 206, 348, 392, 463, 469, 524, 588
SspI AATATT 1 cut(s) 484
SspMI CTAG 2 cut(s) 341, 362
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 5 cut(s) 49, 63, 136, 169, 570
TaqI TCGA 4 cut(s) 35, 202, 260, 299
TasI AATT 7 cut(s) 206, 348, 392, 463, 469, 524, 588
TatI WGTACW 2 cut(s) 90, 699
TfiI GAWTC 1 cut(s) 516
Tru1I TTAA 4 cut(s) 117, 351, 447, 527
Tru9I TTAA 4 cut(s) 117, 351, 447, 527
TscAI CASTG 3 cut(s) 139, 172, 328
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 3 cut(s) 139, 172, 328
Tth111I GACNNNGTC 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 1 cut(s) 588
XceI RCATGY 1 cut(s) 444
XhoI CTCGAG 1 cut(s) 298
XspI CTAG 2 cut(s) 341, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.