Rh3DG112500

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0020531
Physical Location & Seq
Forward (+)
9266076 .. 9266989
914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG112500.1

Sequence Viewer

Length: 594 bp
ATGTCCTTTTCTGTGCCTATGCCTTCGGCTGGACCAAGCCCTACACCCCTTTCGAACCCTACAACTGTGGTTAGCTCACAGTTCCTGGCATCCTACCCCTTGGATCTGTACATTTCTGAGAAGCTGATCACCATTAAGGAAGGTGCCTTCACTGTCACCAATGTTGATGGCGAAATTATTTCGATACATAGGAGATGGAAAGTATATAGAGGAGATAGCTCGAGCAGAAAAGATCTACTTTTCAGTGCCAAGAAGTCAGGGCTAGTCCAAATTAAGACTGAACTAGATGTGTTCTTGGCTACTAACACAAAGGAAGACCAGCATGATTTCAAGGTCAAAGGAAGCTTTAGGGATAAAGCATGTGTTAATGATATAGGAGTGAATTGTAATTCCAATCCTAATATTGGAGTGGAACACAACAACAATCCTATCAGAATCCAACAAGCAACACCTGCCATCAAGTGTGCTCACAACATTATCAAGACACAGTCTGGGCTACAAAGCAGAATTCTGAGTAGAAAGCAGAACACACCAAGCCAAGACAAAAAGGAGCCTCGATCTACACCAAGACAAATGTCCTCTGTGCTGTTGTAA

Protein Analysis

197

Amino Acids

21.8

Weight (kDa)

9.62

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 61 - 122 4.1e-11 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020531)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0461241
rosa_multiflora Rmu_ssc0000326.1_g000013
rosa_roxburghii Rroxscaffold_6G00418770
rosa_rugosa Rorug03G0049200
rosa_samantha Rh3BG110700 Rh3DG112500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 460
Acc36I ACCTGC 1 cut(s) 460
AccB1I GGYRCC 1 cut(s) 143
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 507
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 29, 404
AgsI TTSAA 1 cut(s) 331
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 4 cut(s) 75, 124, 219, 345
AluI AGCT 4 cut(s) 75, 124, 219, 345
Alw21I GWGCWC 1 cut(s) 469
AlwI GGATC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 220
ApoI RAATTY 1 cut(s) 507
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 2 cut(s) 121, 148
AsuII TTCGAA 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 220
AvaII GGWCC 1 cut(s) 32
BanI GGYRCC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 469
BccI CCATC 3 cut(s) 161, 189, 464
BciT130I CCWGG 1 cut(s) 86
BclI TGATCA 1 cut(s) 126
BfaI CTAG 2 cut(s) 263, 284
BfuAI ACCTGC 1 cut(s) 460
BglII AGATCT 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 145, 552
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 98
BoxI GACNNNNGTC 1 cut(s) 574
BpiI GAAGAC 1 cut(s) 321
Bpu14I TTCGAA 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 404
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 2 cut(s) 29, 404
BseMII CTCAG 2 cut(s) 108, 503
BseRI GAGGAG 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 469
BsiHKCI CYCGRG 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 29, 404
BsoBI CYCGRG 1 cut(s) 220
Bsp119I TTCGAA 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 469
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 4 cut(s) 103, 126, 232, 557
BspCNI CTCAG 2 cut(s) 109, 504
BspLI GGNNCC 2 cut(s) 145, 552
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 1 cut(s) 111
BspT104I TTCGAA 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 4 cut(s) 103, 126, 232, 557
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 4 cut(s) 67, 81, 154, 489
BstAPI GCANNNNNTGC 1 cut(s) 452
BstAUI TGTACA 1 cut(s) 108
BstBI TTCGAA 1 cut(s) 53
BstDEI CTNAG 2 cut(s) 117, 512
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 4 cut(s) 106, 129, 235, 560
BstMBI GATC 4 cut(s) 103, 126, 232, 557
BstMWI GCNNNNNNNGC 1 cut(s) 452
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 363
BstPAI GACNNNNGTC 1 cut(s) 574
BstSCI CCNGG 1 cut(s) 84
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 2 cut(s) 103, 232
BstYI RGATCY 2 cut(s) 103, 232
BtsCI GGATG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 150, 250
BveI ACCTGC 1 cut(s) 460
CaiI CAGNNNCTG 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 109
CviAII CATG 2 cut(s) 323, 360
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 2 cut(s) 117, 512
DpnI GATC 4 cut(s) 105, 128, 234, 559
DpnII GATC 4 cut(s) 103, 126, 232, 557
Eco130I CCWWGG 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 507
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 2 cut(s) 326, 363
FaiI YATR 7 cut(s) 20, 189, 205, 207, 324, 361, 374
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FatI CATG 2 cut(s) 322, 359
FbaI TGATCA 1 cut(s) 126
FokI GGATG 1 cut(s) 76
FspBI CTAG 2 cut(s) 263, 284
Hin1II CATG 2 cut(s) 326, 363
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 1 cut(s) 435
HphI GGTGA 2 cut(s) 121, 148
Hpy188I TCNGA 3 cut(s) 118, 434, 513
Hpy188III TCNNGA 1 cut(s) 481
HpyAV CCTTC 3 cut(s) 33, 134, 157
HpyCH4III ACNGT 4 cut(s) 67, 81, 154, 489
HpyF10VI GCNNNNNNNGC 1 cut(s) 452
HpyF3I CTNAG 2 cut(s) 117, 512
Hsp92II CATG 2 cut(s) 326, 363
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 4 cut(s) 103, 126, 232, 557
LmnI GCTCC 1 cut(s) 550
LpnPI CCDG 7 cut(s) 15, 71, 98, 243, 332, 465, 477
LweI GCATC 1 cut(s) 98
MaeI CTAG 2 cut(s) 263, 284
MaeIII GTNAC 1 cut(s) 154
MalI GATC 4 cut(s) 105, 128, 234, 559
MboI GATC 4 cut(s) 103, 126, 232, 557
MboII GAAGA 1 cut(s) 326
MflI RGATCY 2 cut(s) 103, 232
MhlI GDGCHC 1 cut(s) 469
MluCI AATT 5 cut(s) 174, 270, 382, 388, 507
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 3 cut(s) 203, 564, 589
MseI TTAA 3 cut(s) 135, 273, 366
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 452
NdeII GATC 4 cut(s) 103, 126, 232, 557
NlaIII CATG 2 cut(s) 326, 363
NlaIV GGNNCC 2 cut(s) 145, 552
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 363
NspV TTCGAA 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 220
PaqCI CACCTGC 1 cut(s) 460
PfeI GAWTC 1 cut(s) 435
PflFI GACNNNGTC 1 cut(s) 487
PshAI GACNNNNGTC 1 cut(s) 574
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 145, 552
PspPI GGNCC 1 cut(s) 32
PspXI VCTCGAGB 1 cut(s) 220
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 2 cut(s) 103, 232
PsyI GACNNNGTC 1 cut(s) 487
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 3 cut(s) 135, 273, 366
Sau3AI GATC 4 cut(s) 103, 126, 232, 557
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 469
SetI ASST 7 cut(s) 77, 126, 145, 221, 336, 347, 454
SfaNI GCATC 1 cut(s) 98
Sfr274I CTCGAG 1 cut(s) 220
SfuI TTCGAA 1 cut(s) 53
SinI GGWCC 1 cut(s) 32
SlaI CTCGAG 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 5 cut(s) 174, 270, 382, 388, 507
SspI AATATT 1 cut(s) 403
SspMI CTAG 2 cut(s) 263, 284
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 4 cut(s) 67, 81, 154, 489
TaqI TCGA 4 cut(s) 53, 182, 221, 556
TasI AATT 5 cut(s) 174, 270, 382, 388, 507
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 1 cut(s) 435
Tru1I TTAA 3 cut(s) 135, 273, 366
Tru9I TTAA 3 cut(s) 135, 273, 366
TscAI CASTG 2 cut(s) 157, 250
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspRI CASTG 2 cut(s) 157, 250
Tth111I GACNNNGTC 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 1 cut(s) 507
XceI RCATGY 1 cut(s) 363
XhoI CTCGAG 1 cut(s) 220
XspI CTAG 2 cut(s) 263, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.