Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000326.1

Orthogroup ID

OG0020531

Physical Location & Seq

Genomic Coordinates Reverse (-)

82198 .. 83144

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000326.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgccttcggctggaccaagccctacacccctttcgaaccctacaactgtggttagctcacagttcctggcatcctaccccgtggatctgtacatttctgagaagctcatcaccattaaggaaggtgccttcactgtcaccaatgttgatggcgaagtcatgttcactgtaaaaggttcttttttcagccttcatgatactcgacaattgcttgacagcgctggtactcctatccccaccttccgtaagaagattatttcgatacataggagatggaaagtatatagaggagatagctcgagcagaaaagatctacttttcagtgccaagaagtcagggctagtccaaattaagactgaactagatgtgttcttggctactaacacaaaggaagaccagcatgatttcaaggtcaaaggaagctttagggataaagcatgtgttaatgatataggagtgaattgtaattccaatcctaatattggagtggaacacaacaacaatcctatcagaatccaacaattaacacctgccatcaagtgtgcttacaacattatcaagacacagtctgggctacaaagcagaattctgagtagaaagcagaacacaccaagccaagacaaaaaggagcctctacaccaagacaaatgtcctctgtgctgttgtaaatcacaccacaaactcaatcgtgatatcactgatatgtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

236

Amino Acids

26.44

Weight (kDa)

9.37

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020531)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0461241
rosa_multiflora	Rmu_ssc0000326.1_g000013
rosa_roxburghii	Rroxscaffold_6G00418770
rosa_rugosa	Rorug03G0049200
rosa_samantha	Rh3BG110700 Rh3DG112500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	538
Acc36I	ACCTGC	1 cut(s)	538
AccB1I	GGYRCC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	585
AfaI	GTAC	3 cut(s)	92, 226, 707
AfeI	AGCGCT	1 cut(s)	220
AfiI	CCNNNNNNNGG	2 cut(s)	11, 482
AgsI	TTSAA	1 cut(s)	409
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	4 cut(s)	57, 106, 297, 423
AluI	AGCT	4 cut(s)	57, 106, 297, 423
AlwI	GGATC	1 cut(s)	93
AlwNI	CAGNNNCTG	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	298
Aor51HI	AGCGCT	1 cut(s)	220
ApoI	RAATTY	1 cut(s)	585
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	2 cut(s)	103, 130
AsuII	TTCGAA	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	399
BccI	CCATC	3 cut(s)	143, 267, 542
BciT130I	CCWGG	1 cut(s)	68
BfaI	CTAG	2 cut(s)	341, 362
BfoI	RGCGCY	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	538
BglII	AGATCT	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	14
BmeT110I	CYCGRG	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	127, 630
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	80
BoxI	GACNNNNGTC	1 cut(s)	648
BpiI	GAAGAC	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 482
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	2 cut(s)	11, 482
BseMII	CTCAG	2 cut(s)	90, 581
BseRI	GAGGAG	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	11, 482
BsoBI	CYCGRG	1 cut(s)	298
Bsp119I	TTCGAA	1 cut(s)	35
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	85, 310
BspCNI	CTCAG	2 cut(s)	91, 582
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	2 cut(s)	127, 630
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	1 cut(s)	93
BspT104I	TTCGAA	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	2 cut(s)	85, 310
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	5 cut(s)	49, 63, 136, 169, 567
BstAUI	TGTACA	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	99, 590
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	71
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	2 cut(s)	88, 313
BstMBI	GATC	2 cut(s)	85, 310
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	441
BstPAI	GACNNNNGTC	1 cut(s)	648
BstSCI	CCNGG	1 cut(s)	66
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	2 cut(s)	85, 310
BstYI	RGATCY	2 cut(s)	85, 310
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	71
BtsIMutI	CAGTG	4 cut(s)	132, 165, 328, 696
BveI	ACCTGC	1 cut(s)	538
CaiI	CAGNNNCTG	1 cut(s)	67
CciI	TCATGA	1 cut(s)	193
CfoI	GCGC	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	3 cut(s)	91, 225, 706
CviAII	CATG	4 cut(s)	160, 194, 401, 438
CviQI	GTAC	3 cut(s)	91, 225, 706
DdeI	CTNAG	2 cut(s)	99, 590
DpnI	GATC	2 cut(s)	87, 312
DpnII	GATC	2 cut(s)	85, 310
Eco32I	GATATC	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	14
Eco47III	AGCGCT	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	66
EcoRV	GATATC	1 cut(s)	694
FaeI	CATG	4 cut(s)	163, 197, 404, 441
FaiI	YATR	9 cut(s)	161, 195, 267, 283, 285, 402, 439, 452, 704
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	4 cut(s)	159, 193, 400, 437
FokI	GGATG	1 cut(s)	58
FspBI	CTAG	2 cut(s)	341, 362
GlaI	GCGC	1 cut(s)	220
HaeII	RGCGCY	1 cut(s)	222
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	4 cut(s)	163, 197, 404, 441
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	421
HinfI	GANTC	1 cut(s)	513
HphI	GGTGA	2 cut(s)	103, 130
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	3 cut(s)	100, 512, 591
Hpy188III	TCNNGA	3 cut(s)	194, 559, 689
Hpy8I	GTNNAC	1 cut(s)	165
HpyAV	CCTTC	5 cut(s)	15, 116, 139, 200, 250
HpyCH4III	ACNGT	5 cut(s)	49, 63, 136, 169, 567
HpyF3I	CTNAG	2 cut(s)	99, 590
Hsp92II	CATG	4 cut(s)	163, 197, 404, 441
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	85, 310
LmnI	GCTCC	1 cut(s)	628
LpnPI	CCDG	7 cut(s)	53, 80, 207, 321, 410, 543, 555
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	2 cut(s)	341, 362
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	87, 312
MboI	GATC	2 cut(s)	85, 310
MboII	GAAGA	2 cut(s)	262, 404
MfeI	CAATTG	1 cut(s)	206
MflI	RGATCY	2 cut(s)	85, 310
MluCI	AATT	6 cut(s)	206, 348, 460, 466, 521, 585
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	3 cut(s)	281, 642, 663
MseI	TTAA	4 cut(s)	117, 351, 444, 524
MslI	CAYNNNNRTG	1 cut(s)	701
MspR9I	CCNGG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	68
NdeII	GATC	2 cut(s)	85, 310
NlaIII	CATG	4 cut(s)	163, 197, 404, 441
NlaIV	GGNNCC	2 cut(s)	127, 630
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	441
NspV	TTCGAA	1 cut(s)	35
PaeR7I	CTCGAG	1 cut(s)	298
PagI	TCATGA	1 cut(s)	193
PaqCI	CACCTGC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	513
PflFI	GACNNNGTC	1 cut(s)	565
PshAI	GACNNNNGTC	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	127, 630
PspPI	GGNCC	1 cut(s)	14
PspXI	VCTCGAGB	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	67
PsuI	RGATCY	2 cut(s)	85, 310
PsyI	GACNNNGTC	1 cut(s)	565
RsaI	GTAC	3 cut(s)	92, 226, 707
RsaNI	GTAC	3 cut(s)	91, 225, 706
RseI	CAYNNNNRTG	1 cut(s)	701
SaqAI	TTAA	4 cut(s)	117, 351, 444, 524
Sau3AI	GATC	2 cut(s)	85, 310
Sau96I	GGNCC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	68
SetI	ASST	9 cut(s)	59, 108, 127, 178, 242, 299, 414, 425, 532
SfaNI	GCATC	1 cut(s)	80
Sfr274I	CTCGAG	1 cut(s)	298
SfuI	TTCGAA	1 cut(s)	35
SinI	GGWCC	1 cut(s)	14
SlaI	CTCGAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	701
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	6 cut(s)	206, 348, 460, 466, 521, 585
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	2 cut(s)	341, 362
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	5 cut(s)	49, 63, 136, 169, 567
TaqI	TCGA	4 cut(s)	35, 202, 260, 299
TasI	AATT	6 cut(s)	206, 348, 460, 466, 521, 585
TatI	WGTACW	2 cut(s)	90, 705
TfiI	GAWTC	1 cut(s)	513
Tru1I	TTAA	4 cut(s)	117, 351, 444, 524
Tru9I	TTAA	4 cut(s)	117, 351, 444, 524
TscAI	CASTG	4 cut(s)	139, 172, 328, 703
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	4 cut(s)	139, 172, 328, 703
Tth111I	GACNNNGTC	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	585
XceI	RCATGY	1 cut(s)	441
XhoI	CTCGAG	1 cut(s)	298
XspI	CTAG	2 cut(s)	341, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.