Rroxscaffold_6G00418770

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0020531
Physical Location & Seq
Reverse (-)
40345221 .. 40346146
926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00418770.1

Sequence Viewer

Length: 702 bp
ATGCCTTCGGCTGGACCAAGCCCTACACCCCTTTCGAACCCTATAACTGTGGTTAGCTCACAGTTCCTGGCATCCTACCCCGTGGATCTGTACATTTCTGAGAAGCTGATCACCATTAAGGAAGGTGCCTTCACTGTCACCAATGTTGATGCCGAAGTCATGTTCACTGTAAAAGGTTCTTTTTTCAGCCTTCATGATACTCGACAATTGCTTGACAGCGCTGGTACTCCTATCCTCACCTTCCGTCAGAAGATTATTTCGATACGTAGGAGATGGAAAGTATATAGAGGAGATAGCTCGAGCAGAAAAGATCTACTTTTCAGTGCCAAGAAGTCAGGGCTAGTCCAATTTAAGACTGAACCAGATGTGTTCTTGGCTACTAACACAAAGGAAGACCAGCATGATTTCAAGGTCAAAGGAAGCTTTAGGGATACAGCATGTGTTAATGATATAGGAGTGAAGTGTAATTCCAATCCTAATATTGGAGTGGGACACAACAACAATCCTATCAGAAGCCAACAAGCAACACCTGCCATCAAGTGTGCTCACAACATTATCAAGACACAGTCTGGGCTACAGAGCAGAATTCTAAGTAGAAAGCAGAACACACCAAGCCAAGACAAAAAGGAGCCTCTACACCAAGACAAATGTCCTCTGTGCTGTTGTAAATCACACCACAAACTCAATCATGATATGTACTAA

Protein Analysis

233

Amino Acids

25.99

Weight (kDa)

9.47

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 28 - 148 3.3e-28 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020531)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0461241
rosa_multiflora Rmu_ssc0000326.1_g000013
rosa_roxburghii Rroxscaffold_6G00418770
rosa_rugosa Rorug03G0049200
rosa_samantha Rh3BG110700 Rh3DG112500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 538
Acc36I ACCTGC 1 cut(s) 538
AccB1I GGYRCC 1 cut(s) 125
AclWI GGATC 1 cut(s) 93
AcsI RAATTY 1 cut(s) 585
AfaI GTAC 3 cut(s) 92, 226, 698
AfeI AGCGCT 1 cut(s) 220
AfiI CCNNNNNNNGG 2 cut(s) 11, 482
AgsI TTSAA 1 cut(s) 409
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 4 cut(s) 57, 106, 297, 423
AluI AGCT 4 cut(s) 57, 106, 297, 423
Alw21I GWGCWC 1 cut(s) 547
AlwI GGATC 1 cut(s) 93
AlwNI CAGNNNCTG 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 298
Aor51HI AGCGCT 1 cut(s) 220
ApoI RAATTY 1 cut(s) 585
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 3 cut(s) 103, 130, 229
AsuII TTCGAA 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 298
AvaII GGWCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 547
BccI CCATC 2 cut(s) 267, 542
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 424
BclI TGATCA 1 cut(s) 108
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 575
BfoI RGCGCY 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 538
BfuI GTATCC 1 cut(s) 424
BglII AGATCT 1 cut(s) 310
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 127, 630
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 2 cut(s) 80, 139
BoxI GACNNNNGTC 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 35
BsaAI YACGTR 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 482
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 71
BseLI CCNNNNNNNGG 2 cut(s) 11, 482
BseMII CTCAG 1 cut(s) 90
BseRI GAGGAG 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 547
BsiHKCI CYCGRG 1 cut(s) 298
BslFI GGGAC 1 cut(s) 504
BslI CCNNNNNNNGG 2 cut(s) 11, 482
BsmFI GGGAC 1 cut(s) 504
BsoBI CYCGRG 1 cut(s) 298
Bsp119I TTCGAA 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 547
Bsp1407I TGTACA 1 cut(s) 90
Bsp143I GATC 3 cut(s) 85, 108, 310
BspCNI CTCAG 1 cut(s) 91
BspHI TCATGA 2 cut(s) 193, 688
BspLI GGNNCC 2 cut(s) 127, 630
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 1 cut(s) 93
BspT104I TTCGAA 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 125
BsrGI TGTACA 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 3 cut(s) 85, 108, 310
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 5 cut(s) 49, 63, 136, 169, 567
BstAPI GCANNNNNTGC 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 35
BstDEI CTNAG 2 cut(s) 99, 590
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 3 cut(s) 88, 111, 313
BstMBI GATC 3 cut(s) 85, 108, 310
BstMWI GCNNNNNNNGC 1 cut(s) 530
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 441
BstPAI GACNNNNGTC 1 cut(s) 648
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 575
BstSNI TACGTA 1 cut(s) 266
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 2 cut(s) 85, 310
BstYI RGATCY 2 cut(s) 85, 310
BsuI GTATCC 1 cut(s) 424
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 71
BtsIMutI CAGTG 3 cut(s) 132, 165, 328
BveI ACCTGC 1 cut(s) 538
CaiI CAGNNNCTG 1 cut(s) 67
CciI TCATGA 2 cut(s) 193, 688
CfoI GCGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 3 cut(s) 91, 225, 697
CviAII CATG 5 cut(s) 160, 194, 401, 438, 689
CviQI GTAC 3 cut(s) 91, 225, 697
DdeI CTNAG 2 cut(s) 99, 590
DpnI GATC 3 cut(s) 87, 110, 312
DpnII GATC 3 cut(s) 85, 108, 310
Eco105I TACGTA 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 14
Eco47III AGCGCT 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 298
EcoRI GAATTC 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 66
FaeI CATG 5 cut(s) 163, 197, 404, 441, 692
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 1 cut(s) 504
FatI CATG 5 cut(s) 159, 193, 400, 437, 688
FbaI TGATCA 1 cut(s) 108
FokI GGATG 1 cut(s) 58
FspBI CTAG 1 cut(s) 341
GlaI GCGC 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 222
HhaI GCGC 1 cut(s) 221
Hin1II CATG 5 cut(s) 163, 197, 404, 441, 692
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 421
HphI GGTGA 3 cut(s) 103, 130, 229
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 3 cut(s) 100, 249, 512
Hpy188III TCNNGA 3 cut(s) 194, 559, 689
Hpy8I GTNNAC 1 cut(s) 165
HpyAV CCTTC 5 cut(s) 15, 116, 139, 200, 250
HpyCH4III ACNGT 5 cut(s) 49, 63, 136, 169, 567
HpyCH4IV ACGT 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 530
HpyF3I CTNAG 2 cut(s) 99, 590
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 5 cut(s) 163, 197, 404, 441, 692
HspAI GCGC 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 3 cut(s) 85, 108, 310
LmnI GCTCC 1 cut(s) 628
LpnPI CCDG 8 cut(s) 53, 80, 207, 321, 375, 410, 543, 555
LweI GCATC 2 cut(s) 80, 139
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 1 cut(s) 136
MalI GATC 3 cut(s) 87, 110, 312
MboI GATC 3 cut(s) 85, 108, 310
MboII GAAGA 2 cut(s) 262, 404
MfeI CAATTG 1 cut(s) 206
MflI RGATCY 2 cut(s) 85, 310
MhlI GDGCHC 1 cut(s) 547
MluCI AATT 4 cut(s) 206, 347, 466, 585
MnlI CCTC 4 cut(s) 245, 281, 642, 663
MseI TTAA 3 cut(s) 117, 351, 444
MspR9I CCNGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 530
NdeII GATC 3 cut(s) 85, 108, 310
NlaIII CATG 5 cut(s) 163, 197, 404, 441, 692
NlaIV GGNNCC 2 cut(s) 127, 630
NmuCI GTSAC 1 cut(s) 136
NspI RCATGY 1 cut(s) 441
NspV TTCGAA 1 cut(s) 35
PaeR7I CTCGAG 1 cut(s) 298
PagI TCATGA 2 cut(s) 193, 688
PaqCI CACCTGC 1 cut(s) 538
PflFI GACNNNGTC 1 cut(s) 565
Ppu21I YACGTR 1 cut(s) 266
PshAI GACNNNNGTC 1 cut(s) 648
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 127, 630
PspPI GGNCC 1 cut(s) 14
PspXI VCTCGAGB 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 67
PsuI RGATCY 2 cut(s) 85, 310
PsyI GACNNNGTC 1 cut(s) 565
RsaI GTAC 3 cut(s) 92, 226, 698
RsaNI GTAC 3 cut(s) 91, 225, 697
SaqAI TTAA 3 cut(s) 117, 351, 444
Sau3AI GATC 3 cut(s) 85, 108, 310
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 1 cut(s) 547
SfaNI GCATC 2 cut(s) 80, 139
SfcI CTRYAG 1 cut(s) 575
Sfr274I CTCGAG 1 cut(s) 298
SfuI TTCGAA 1 cut(s) 35
SinI GGWCC 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
SnaBI TACGTA 1 cut(s) 266
Sse9I AATT 4 cut(s) 206, 347, 466, 585
SspI AATATT 1 cut(s) 481
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 5 cut(s) 49, 63, 136, 169, 567
TaiI ACGT 1 cut(s) 268
TaqI TCGA 4 cut(s) 35, 202, 260, 299
TasI AATT 4 cut(s) 206, 347, 466, 585
TatI WGTACW 2 cut(s) 90, 696
Tru1I TTAA 3 cut(s) 117, 351, 444
Tru9I TTAA 3 cut(s) 117, 351, 444
TscAI CASTG 3 cut(s) 139, 172, 328
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 3 cut(s) 139, 172, 328
Tth111I GACNNNGTC 1 cut(s) 565
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 1 cut(s) 585
XceI RCATGY 1 cut(s) 441
XhoI CTCGAG 1 cut(s) 298
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.